AT1G19210

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015911
Physical Location & Seq
Reverse (-)
6626794 .. 6627688
895 bp
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UTR
Exon/CDS
Intron
AT1G19210.1

Sequence Viewer

Length: 558 bp
ATGGAAGGGTCGTCTTCTTCGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTTTCAGAGATCAGACTTCCCAACAGCAGAGAACGTATTTGGTTGGGCTCTTACGATACTCCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTATTGTCTCCGTGGCAACAACGCAAAGTTCAATTTCCCTGATAATCCTCCGGTGATCTCCGGCGGACGTAACTTGTCGCGATCTGAGATAAGAGAAGCTGCTGCGAGGTTCGCTAATTCGGCGGAGGATGATTCAAGTGGCGGAGCAGGATACGAGATACGGCAAGAATCTGCTTCAACATCGATGGACGTTGATTCGGAGTTTTTGAGTATGCTTCCGACGGTTGGTTCGGGTAACTTCGCTTCGGAGTTTGGGTTATTCCCTGGGTTTGATGATTTCTCCGATGAATACTCCGGTGATCGTTTCAGAGAGCAGCTTTCGCCTACACAAGATTATTATCAGCTTGGAGAAGAGACTTACGCCGATGGTTCCATGTTTCTTTGGAATTTTTGA

Protein Analysis

185

Amino Acids

20.73

Weight (kDa)

4.77

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 10 - 61 2.7e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015911)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19210
fragaria_vesca FvH4_1g09180
malus_domestica MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica Prupe.7G194400_v2.0.a1
pyrus_communis pycom02g07650 pycom15g19580
rosa_chinensis RchiOBHm_Chr2g0095581
rosa_laevigata RLG00000016581
rosa_multiflora Rmu_sc0004719.1_g000008
rosa_rugosa Rorug02G0052500
rosa_samantha Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana Rw2G007620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 145, 158, 244
AciI CCGC 5 cut(s) 140, 158, 228, 287, 306
AcsI RAATTY 1 cut(s) 550
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 196, 300, 342
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 3 cut(s) 263, 481, 508
AluI AGCT 3 cut(s) 263, 481, 508
Alw26I GTCTC 2 cut(s) 176, 512
ApeKI GCWGC 3 cut(s) 263, 266, 478
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 2 cut(s) 376, 408
AspLEI GCGC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 229, 473
BanII GRGCYC 1 cut(s) 119
BarI GAAGNNNNNNTAC 2 cut(s) 391, 423
BbsI GAAGAC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 250, 253, 490
BccI CCATC 2 cut(s) 343, 524
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 176, 512
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 5 cut(s) 141, 159, 264, 267, 479
BlsI GCNGC 5 cut(s) 142, 160, 265, 268, 480
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 175, 427, 428
BsaWI WCCGGW 2 cut(s) 214, 458
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse8I GATNNNNATC 1 cut(s) 501
BseBI CCWGG 1 cut(s) 429
BseCI ATCGAT 1 cut(s) 347
BseDI CCNNGG 3 cut(s) 175, 427, 428
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 123, 240
BseXI GCAGC 3 cut(s) 250, 253, 490
Bsh1236I CGCG 3 cut(s) 145, 158, 244
BshVI ATCGAT 1 cut(s) 347
BsiSI CCGG 3 cut(s) 215, 225, 459
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 176, 512
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 78, 219, 245, 463
Bsp68I TCGCGA 1 cut(s) 244
BspACI CCGC 5 cut(s) 140, 158, 228, 287, 306
BspCNI CTCAG 2 cut(s) 124, 241
BspDI ATCGAT 1 cut(s) 347
BspFNI CGCG 3 cut(s) 145, 158, 244
BspLI GGNNCC 1 cut(s) 535
BssECI CCNNGG 3 cut(s) 175, 427, 428
BssMI GATC 4 cut(s) 78, 219, 245, 463
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 2 cut(s) 44, 510
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 132, 249
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 3 cut(s) 145, 158, 244
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 4 cut(s) 81, 222, 248, 466
BstMAI GTCTC 2 cut(s) 176, 512
BstMBI GATC 4 cut(s) 78, 219, 245, 463
BstMWI GCNNNNNNNGC 5 cut(s) 146, 155, 275, 284, 484
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstUI CGCG 3 cut(s) 145, 158, 244
BstV1I GCAGC 3 cut(s) 250, 253, 490
BstV2I GAAGAC 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 347
BsuI GTATCC 1 cut(s) 308
BsuTUI ATCGAT 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 298
BtuMI TCGCGA 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 347
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 538
CviJI RGCY 5 cut(s) 117, 161, 263, 481, 508
CviKI_1 RGCY 5 cut(s) 117, 161, 263, 481, 508
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 2 cut(s) 132, 249
DpnI GATC 4 cut(s) 80, 221, 247, 465
DpnII GATC 4 cut(s) 78, 219, 245, 463
Eam1104I CTCTTC 2 cut(s) 44, 510
EarI CTCTTC 2 cut(s) 44, 510
EciI GGCGGA 3 cut(s) 243, 302, 321
Eco24I GRGCYC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 1 cut(s) 541
FaiI YATR 2 cut(s) 377, 539
FatI CATG 1 cut(s) 537
Fnu4HI GCNGC 5 cut(s) 141, 159, 264, 267, 479
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 5 cut(s) 141, 159, 264, 267, 479
GlaI GCGC 1 cut(s) 144
GluI GCNGC 5 cut(s) 141, 159, 264, 267, 479
HapII CCGG 3 cut(s) 215, 225, 459
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 541
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 3 cut(s) 296, 332, 359
HpaII CCGG 3 cut(s) 215, 225, 459
HphI GGTGA 2 cut(s) 229, 473
Hpy188I TCNGA 8 cut(s) 76, 83, 250, 364, 384, 412, 448, 473
Hpy188III TCNNGA 2 cut(s) 131, 243
Hpy99I CGWCG 2 cut(s) 158, 388
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 3 cut(s) 103, 232, 354
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 155, 275, 284, 484
HpyF3I CTNAG 2 cut(s) 132, 249
HpySE526I ACGT 3 cut(s) 103, 232, 354
Hsp92II CATG 1 cut(s) 541
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 4 cut(s) 78, 219, 245, 463
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 8 cut(s) 144, 216, 228, 238, 297, 414, 441, 472
Lsp1109I GCAGC 3 cut(s) 250, 253, 490
LweI GCATC 1 cut(s) 12
MaeII ACGT 3 cut(s) 103, 232, 354
MaeIII GTNAC 2 cut(s) 233, 398
MalI GATC 4 cut(s) 80, 221, 247, 465
MboI GATC 4 cut(s) 78, 219, 245, 463
MboII GAAGA 4 cut(s) 6, 9, 61, 527
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 196, 280, 550
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 5 cut(s) 39, 45, 222, 264, 283
MspI CCGG 3 cut(s) 215, 225, 459
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 3 cut(s) 145, 158, 244
MwoI GCNNNNNNNGC 5 cut(s) 146, 155, 275, 284, 484
NdeII GATC 4 cut(s) 78, 219, 245, 463
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 1 cut(s) 535
NruI TCGCGA 1 cut(s) 244
PasI CCCWGGG 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 3 cut(s) 296, 332, 359
PkrI GCNGC 5 cut(s) 142, 160, 265, 268, 480
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 535
RruI TCGCGA 1 cut(s) 244
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 5 cut(s) 141, 159, 264, 267, 479
Sau3AI GATC 4 cut(s) 78, 219, 245, 463
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 119
SetI ASST 7 cut(s) 106, 235, 265, 275, 357, 483, 510
SfaNI GCATC 1 cut(s) 12
Sse9I AATT 3 cut(s) 196, 280, 550
SsiI CCGC 5 cut(s) 140, 158, 228, 287, 306
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 3 cut(s) 106, 235, 357
TaqI TCGA 3 cut(s) 20, 153, 347
TasI AATT 3 cut(s) 196, 280, 550
TatI WGTACW 1 cut(s) 33
TauI GCSGC 2 cut(s) 143, 161
TfiI GAWTC 3 cut(s) 296, 332, 359
TseI GCWGC 3 cut(s) 263, 266, 478
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 1 cut(s) 164
XapI RAATTY 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.