Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Reverse (-)

17887545 .. 17888258

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1221100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTGAAGCAGACGATTGGGAAGCCCTCCGAGCGAAACGACATCAAGTACAAGGGCGTCCGCAAGCGCAAGTGGGGCAAATGGGTGTCGGAAATCCGCCTCCCCAACAGCCGGGAGCGAATCTGGTTGGGATCCTACGACGCGCCCGAAAAGGCAGCGCGTGCCTTCGACGCGGCCCTCTTTTGCTTGCGCGGCCACACTGCCAAGTTTAATTTCCCCGACAACCCGCCTGAGATTTCGGGGGGAAGGTCCCTGAGCGCGGCCCAGATCCAGACAGAGGCGGCGAGGTTCGCGAATTCGGAGCTTCCGAGGAGCCACCAGTCGATGTCGGAGTTTCAGGCGGAGTCTCAGTCGATGTCGGAGTTGCAGGCGGAATCTCAGTCGATGTCGGAGTTGCAGGCGGAATCTCAGTCGATGTCGGAGTTGCAGGCGGAGTCCCGGTCTCCGTCCGTGTCGGAGGGGAGTGGGACCGTCTTCGTGGAAAGCGAATTTCTAGTGACTCCAAACGATTCGTTTTCGGACCCTTTTAGCACATTCGGGTCGGGTAATTACGCTACGGAGTACGGGTTGTTTGCGGGTTTTGATGAAATGAACTATCAGTTTTTCAGTCCAGCTGCGGCGGTGCCAACGCCGGTCGTTGATTACTACGCGGAAGAGAACTTGGACGGTCAGTTTTTCAGTCCGGCCCAGGAGTCTTTCCTCTGGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

238

Amino Acids

26.45

Weight (kDa)

4.76

Isoelectric Point (pI)

77.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	16 - 66	5.4e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	622
AccII	CGCG	7 cut(s)	143, 160, 173, 192, 260, 293, 650
AclWI	GGATC	3 cut(s)	126, 139, 262
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	295, 488, 706
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	50, 563
AfiI	CCNNNNNNNGG	3 cut(s)	111, 259, 277
AjnI	CCWGG	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	304, 614
AluI	AGCT	2 cut(s)	304, 614
Alw26I	GTCTC	2 cut(s)	351, 447
AlwI	GGATC	3 cut(s)	126, 139, 262
AoxI	GGCC	4 cut(s)	174, 193, 261, 684
ApeKI	GCWGC	2 cut(s)	155, 614
ApoI	RAATTY	3 cut(s)	295, 488, 706
AspLEI	GCGC	5 cut(s)	69, 145, 160, 192, 260
AspS9I	GGNCC	6 cut(s)	175, 249, 262, 468, 520, 685
AsuC2I	CCSGG	2 cut(s)	113, 439
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	249, 468, 520
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	167, 601
BciT130I	CCWGG	1 cut(s)	689
BcnI	CCSGG	2 cut(s)	113, 439
BcoDI	GTCTC	2 cut(s)	351, 447
BfaI	CTAG	2 cut(s)	494, 712
BisI	GCNGC	7 cut(s)	156, 174, 193, 261, 282, 615, 618
BlsI	GCNGC	7 cut(s)	157, 175, 194, 262, 283, 616, 619
Bme1390I	CCNGG	3 cut(s)	113, 439, 689
Bme18I	GGWCC	3 cut(s)	249, 468, 520
BmgT120I	GGNCC	6 cut(s)	175, 249, 262, 468, 520, 685
BmiI	GGNNCC	6 cut(s)	133, 251, 314, 469, 522, 624
BmrFI	CCNGG	3 cut(s)	113, 439, 689
BpiI	GAAGAC	1 cut(s)	466
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	113, 439
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	308, 687
BsaXI	ACNNNNNCTCC	6 cut(s)	335, 365, 425, 455, 551, 581
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 259, 277
Bse118I	RCCGGY	1 cut(s)	631
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	308, 687
BseLI	CCNNNNNNNGG	3 cut(s)	111, 259, 277
BseMII	CTCAG	5 cut(s)	222, 245, 362, 392, 422
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	167, 601
Bsh1236I	CGCG	7 cut(s)	143, 160, 173, 192, 260, 293, 650
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	176, 195, 263, 686
BshNI	GGYRCC	1 cut(s)	622
BsiEI	CGRYCG	1 cut(s)	636
BsiSI	CCGG	4 cut(s)	112, 439, 632, 683
BslFI	GGGAC	3 cut(s)	235, 421, 481
BslI	CCNNNNNNNGG	3 cut(s)	111, 259, 277
BsmAI	GTCTC	2 cut(s)	351, 447
BsmFI	GGGAC	3 cut(s)	235, 421, 481
BsnI	GGCC	4 cut(s)	176, 195, 263, 686
Bso31I	GGTCTC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	131, 267
Bsp68I	TCGCGA	1 cut(s)	293
BspANI	GGCC	4 cut(s)	176, 195, 263, 686
BspCNI	CTCAG	5 cut(s)	223, 246, 361, 391, 421
BspFNI	CGCG	7 cut(s)	143, 160, 173, 192, 260, 293, 650
BspLI	GGNNCC	6 cut(s)	133, 251, 314, 469, 522, 624
BspPI	GGATC	3 cut(s)	126, 139, 262
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	631
BssECI	CCNNGG	2 cut(s)	308, 687
BssMI	GATC	2 cut(s)	131, 267
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	2 cut(s)	472, 668
Bst6I	CTCTTC	1 cut(s)	648
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	6 cut(s)	65, 162, 188, 369, 399, 429
BstDEI	CTNAG	5 cut(s)	231, 254, 348, 378, 408
BstFNI	CGCG	7 cut(s)	143, 160, 173, 192, 260, 293, 650
BstHHI	GCGC	5 cut(s)	69, 145, 160, 192, 260
BstKTI	GATC	2 cut(s)	134, 270
BstMAI	GTCTC	2 cut(s)	351, 447
BstMBI	GATC	2 cut(s)	131, 267
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 75, 161, 170, 192, 290
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	3 cut(s)	111, 437, 687
BstUI	CGCG	7 cut(s)	143, 160, 173, 192, 260, 293, 650
BstV1I	GCAGC	2 cut(s)	167, 601
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	2 cut(s)	131, 267
BstYI	RGATCY	2 cut(s)	131, 267
BsuRI	GGCC	4 cut(s)	176, 195, 263, 686
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BtuMI	TCGCGA	1 cut(s)	293
Cac8I	GCNNGC	6 cut(s)	65, 162, 188, 369, 399, 429
CfoI	GCGC	5 cut(s)	69, 145, 160, 192, 260
Cfr10I	RCCGGY	1 cut(s)	631
Cfr13I	GGNCC	6 cut(s)	175, 249, 262, 468, 520, 685
CseI	GACGC	3 cut(s)	46, 149, 179
Csp6I	GTAC	2 cut(s)	49, 562
CviJI	RGCY	9 cut(s)	25, 111, 176, 195, 263, 304, 315, 614, 686
CviKI_1	RGCY	9 cut(s)	25, 111, 176, 195, 263, 304, 315, 614, 686
CviQI	GTAC	2 cut(s)	49, 562
DdeI	CTNAG	5 cut(s)	231, 254, 348, 378, 408
DpnI	GATC	2 cut(s)	133, 269
DpnII	GATC	2 cut(s)	131, 267
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	5 cut(s)	86, 356, 386, 416, 446
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	3 cut(s)	249, 468, 520
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	687
FaqI	GGGAC	3 cut(s)	235, 421, 481
FauI	CCCGC	2 cut(s)	234, 568
Fnu4HI	GCNGC	7 cut(s)	156, 174, 193, 261, 282, 615, 618
Fsp4HI	GCNGC	7 cut(s)	156, 174, 193, 261, 282, 615, 618
FspBI	CTAG	2 cut(s)	494, 712
GlaI	GCGC	5 cut(s)	68, 144, 159, 191, 259
GluI	GCNGC	7 cut(s)	156, 174, 193, 261, 282, 615, 618
HaeIII	GGCC	4 cut(s)	176, 195, 263, 686
HapII	CCGG	4 cut(s)	112, 439, 632, 683
HgaI	GACGC	3 cut(s)	46, 149, 179
HhaI	GCGC	5 cut(s)	69, 145, 160, 192, 260
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	5 cut(s)	67, 143, 158, 190, 258
HinP1I	GCGC	5 cut(s)	67, 143, 158, 190, 258
HinfI	GANTC	8 cut(s)	120, 344, 374, 404, 434, 499, 509, 692
HpaII	CCGG	4 cut(s)	112, 439, 632, 683
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	271, 292, 703
Hpy99I	CGWCG	2 cut(s)	143, 173
HpyAV	CCTTC	2 cut(s)	175, 240
HpyCH4III	ACNGT	2 cut(s)	472, 668
HpyCH4V	TGCA	3 cut(s)	367, 397, 427
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 75, 161, 170, 192, 290
HpyF3I	CTNAG	5 cut(s)	231, 254, 348, 378, 408
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	5 cut(s)	67, 143, 158, 190, 258
Kzo9I	GATC	2 cut(s)	131, 267
LmnI	GCTCC	3 cut(s)	115, 301, 312
Lsp1109I	GCAGC	2 cut(s)	167, 601
MaeI	CTAG	2 cut(s)	494, 712
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	2 cut(s)	133, 269
MboI	GATC	2 cut(s)	131, 267
MboII	GAAGA	2 cut(s)	466, 665
MflI	RGATCY	2 cut(s)	131, 267
MluCI	AATT	5 cut(s)	211, 295, 488, 547, 706
MlyI	GAGTC	4 cut(s)	353, 443, 493, 701
MmeI	TCCRAC	6 cut(s)	69, 309, 339, 369, 399, 435
MnlI	CCTC	8 cut(s)	37, 110, 188, 271, 279, 303, 451, 710
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	112, 439, 632, 683
MspR9I	CCNGG	3 cut(s)	113, 439, 689
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	7 cut(s)	143, 160, 173, 192, 260, 293, 650
MwoI	GCNNNNNNNGC	6 cut(s)	31, 75, 161, 170, 192, 290
NciI	CCSGG	2 cut(s)	113, 439
NdeII	GATC	2 cut(s)	131, 267
NlaIV	GGNNCC	6 cut(s)	133, 251, 314, 469, 522, 624
NmuCI	GTSAC	1 cut(s)	496
NruI	TCGCGA	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 305, 483
PfeI	GAWTC	4 cut(s)	120, 374, 404, 509
PkrI	GCNGC	7 cut(s)	157, 175, 194, 262, 283, 616, 619
PleI	GAGTC	4 cut(s)	352, 442, 493, 700
PpsI	GAGTC	4 cut(s)	352, 442, 493, 700
PpuMI	RGGWCCY	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	6 cut(s)	133, 251, 314, 469, 522, 624
PspPI	GGNCC	6 cut(s)	175, 249, 262, 468, 520, 685
PspPPI	RGGWCCY	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	131, 267
PvuII	CAGCTG	1 cut(s)	614
RruI	TCGCGA	1 cut(s)	293
RsaI	GTAC	2 cut(s)	50, 563
RsaNI	GTAC	2 cut(s)	49, 562
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	7 cut(s)	156, 174, 193, 261, 282, 615, 618
Sau3AI	GATC	2 cut(s)	131, 267
Sau96I	GGNCC	6 cut(s)	175, 249, 262, 468, 520, 685
SchI	GAGTC	4 cut(s)	353, 443, 493, 701
ScrFI	CCNGG	3 cut(s)	113, 439, 689
SetI	ASST	4 cut(s)	251, 290, 306, 616
SinI	GGWCC	3 cut(s)	249, 468, 520
Sse9I	AATT	5 cut(s)	211, 295, 488, 547, 706
SspMI	CTAG	2 cut(s)	494, 712
StyD4I	CCNGG	3 cut(s)	111, 437, 687
TaaI	ACNGT	2 cut(s)	472, 668
TaqI	TCGA	5 cut(s)	168, 323, 353, 383, 413
TasI	AATT	5 cut(s)	211, 295, 488, 547, 706
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	5 cut(s)	176, 195, 263, 284, 620
TfiI	GAWTC	4 cut(s)	120, 374, 404, 509
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	155, 614
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	600, 605
TspGWI	ACGGA	3 cut(s)	435, 439, 572
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	3 cut(s)	249, 468, 520
XapI	RAATTY	3 cut(s)	295, 488, 706
XspI	CTAG	2 cut(s)	494, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.