Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004719.1

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Forward (+)

28901 .. 29533

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004719.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggtgaagcagacgatcgggaagccatcggagcgaagcgacgccaagtacaaaggtgttcggaagcgcaagtggggcaaatgggtctccgagatccgcctacccaacagccgcgaacgcatctggttgggctcctacgacacccccgagaaagcggcgcgtgccttcgacgcggctctgttctgcctccgcggccgcaccgccaagttcaacttccccgacaaccctcccgacatctccggcggccgctccctctcccccgcagagatccaggccgaggccgccaggttcgccaataacgaggagaaccctccgccgccgcaggtccccaggagccactccgatctttccatgtcggagcagcagacggagtccccgtccgtctcggaggggagtgggaccctcgtcatggacagtgccgctagtgactttagcgtgacggtgaaccaaaacgacgagtcgttttcggacttgtttagaacgttcgggtcgggtaactacgcgacggagtatggattgttcccgggttttgacgatctcaacggtcagtttttcagtccggcacctcaaacgccagccgttgattacgctgaggagaatttagctcaggagtcgttcctatggaatttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

210

Amino Acids

23.3

Weight (kDa)

4.88

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	562
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	5 cut(s)	114, 160, 173, 192, 503
AclI	AACGTT	1 cut(s)	482
AclWI	GGATC	2 cut(s)	88, 262
AcoI	YGGCCR	2 cut(s)	193, 244
AcsI	RAATTY	2 cut(s)	598, 625
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	277, 409
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	270, 284, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	1 cut(s)	605
AluI	AGCT	1 cut(s)	605
Alw26I	GTCTC	2 cut(s)	91, 388
AlwI	GGATC	2 cut(s)	88, 262
Ama87I	CYCGRG	2 cut(s)	146, 523
AoxI	GGCC	4 cut(s)	193, 244, 273, 279
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	2 cut(s)	598, 625
AspLEI	GCGC	2 cut(s)	69, 160
AspS9I	GGNCC	2 cut(s)	325, 399
AsuC2I	CCSGG	2 cut(s)	524, 525
AsuHPI	GGTGA	2 cut(s)	16, 454
AvaI	CYCGRG	2 cut(s)	146, 523
AvaII	GGWCC	2 cut(s)	325, 399
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	3 cut(s)	272, 286, 331
BcnI	CCSGG	2 cut(s)	524, 525
BcoDI	GTCTC	2 cut(s)	91, 388
BfaI	CTAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	192
Bme1390I	CCNGG	5 cut(s)	272, 286, 331, 524, 525
Bme18I	GGWCC	2 cut(s)	325, 399
BmeT110I	CYCGRG	2 cut(s)	146, 523
BmgT120I	GGNCC	2 cut(s)	325, 399
BmiI	GGNNCC	6 cut(s)	133, 327, 335, 400, 401, 564
BmrFI	CCNGG	5 cut(s)	272, 286, 331, 524, 525
BmsI	GCATC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	404
Bpu10I	CCTNAGC	2 cut(s)	591, 606
BpuMI	CCSGG	2 cut(s)	524, 525
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	190, 276, 329, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 409
BseBI	CCWGG	3 cut(s)	272, 286, 331
BseDI	CCNNGG	4 cut(s)	190, 276, 329, 523
BseLI	CCNNNNNNNGG	2 cut(s)	277, 409
BseMII	CTCAG	2 cut(s)	582, 620
BseRI	GAGGAG	2 cut(s)	317, 608
BseX3I	CGGCCG	2 cut(s)	193, 244
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	5 cut(s)	114, 160, 173, 192, 503
Bsh1285I	CGRYCG	3 cut(s)	18, 196, 247
BshFI	GGCC	4 cut(s)	195, 246, 275, 281
BshNI	GGYRCC	1 cut(s)	562
BsiEI	CGRYCG	3 cut(s)	18, 196, 247
BsiHKCI	CYCGRG	2 cut(s)	146, 523
BsiSI	CCGG	3 cut(s)	240, 524, 560
BslFI	GGGAC	3 cut(s)	311, 358, 412
BslI	CCNNNNNNNGG	2 cut(s)	277, 409
BsmAI	GTCTC	2 cut(s)	91, 388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	3 cut(s)	311, 358, 412
BsnI	GGCC	4 cut(s)	195, 246, 275, 281
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	2 cut(s)	146, 523
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	5 cut(s)	15, 93, 267, 343, 535
BspANI	GGCC	4 cut(s)	195, 246, 275, 281
BspCNI	CTCAG	2 cut(s)	583, 619
BspFNI	CGCG	5 cut(s)	114, 160, 173, 192, 503
BspLI	GGNNCC	6 cut(s)	133, 327, 335, 400, 401, 564
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	88, 262
BspT107I	GGYRCC	1 cut(s)	562
BspTNI	GGTCTC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	249
BssECI	CCNNGG	4 cut(s)	190, 276, 329, 523
BssMI	GATC	5 cut(s)	15, 93, 267, 343, 535
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	3 cut(s)	272, 286, 331
Bst4CI	ACNGT	3 cut(s)	416, 442, 545
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	162, 576
BstDEI	CTNAG	2 cut(s)	591, 606
BstDSI	CCRYGG	1 cut(s)	190
BstFNI	CGCG	5 cut(s)	114, 160, 173, 192, 503
BstHHI	GCGC	2 cut(s)	69, 160
BstKTI	GATC	5 cut(s)	18, 96, 270, 346, 538
BstMAI	GTCTC	2 cut(s)	91, 388
BstMBI	GATC	5 cut(s)	15, 93, 267, 343, 535
BstMCI	CGRYCG	3 cut(s)	18, 196, 247
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 75, 117, 161, 170, 192, 281, 290
BstNI	CCWGG	3 cut(s)	272, 286, 331
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	5 cut(s)	270, 284, 329, 522, 523
BstUI	CGCG	5 cut(s)	114, 160, 173, 192, 503
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	2 cut(s)	93, 267
BstYI	RGATCY	2 cut(s)	93, 267
BstZI	CGGCCG	2 cut(s)	193, 244
BsuRI	GGCC	4 cut(s)	195, 246, 275, 281
BtgI	CCRYGG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	162, 576
CciNI	GCGGCCGC	2 cut(s)	193, 244
CfoI	GCGC	2 cut(s)	69, 160
Cfr13I	GGNCC	2 cut(s)	325, 399
Cfr42I	CCGCGG	1 cut(s)	193
Cfr9I	CCCGGG	1 cut(s)	523
CseI	GACGC	2 cut(s)	50, 179
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	352, 409
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	591, 606
DpnI	GATC	5 cut(s)	17, 95, 269, 345, 537
DpnII	GATC	5 cut(s)	15, 93, 267, 343, 535
EaeI	YGGCCR	2 cut(s)	193, 244
EagI	CGGCCG	2 cut(s)	193, 244
EciI	GGCGGA	2 cut(s)	86, 303
EclXI	CGGCCG	2 cut(s)	193, 244
Eco24I	GRGCYC	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	325, 399
Eco52I	CGGCCG	2 cut(s)	193, 244
Eco88I	CYCGRG	2 cut(s)	146, 523
EcoO109I	RGGNCCY	2 cut(s)	325, 399
EcoRII	CCWGG	3 cut(s)	270, 284, 329
EcoT38I	GRGCYC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	2 cut(s)	355, 412
FaiI	YATR	4 cut(s)	353, 410, 513, 622
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	3 cut(s)	311, 358, 412
FatI	CATG	2 cut(s)	351, 408
FauI	CCCGC	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	68, 159
HaeIII	GGCC	4 cut(s)	195, 246, 275, 281
HapII	CCGG	3 cut(s)	240, 524, 560
HgaI	GACGC	2 cut(s)	50, 179
HhaI	GCGC	2 cut(s)	69, 160
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	355, 412
Hin6I	GCGC	2 cut(s)	67, 158
HinP1I	GCGC	2 cut(s)	67, 158
HinfI	GANTC	3 cut(s)	371, 458, 611
HpaII	CCGG	3 cut(s)	240, 524, 560
HphI	GGTGA	2 cut(s)	16, 454
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	7 cut(s)	31, 63, 91, 343, 358, 388, 469
Hpy188III	TCNNGA	3 cut(s)	19, 230, 608
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	4 cut(s)	44, 173, 458, 508
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	416, 442, 545
HpyCH4IV	ACGT	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 75, 117, 161, 170, 192, 281, 290
HpyF3I	CTNAG	2 cut(s)	591, 606
HpySE526I	ACGT	1 cut(s)	482
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	355, 412
HspAI	GCGC	2 cut(s)	67, 158
KflI	GGGWCCC	1 cut(s)	399
KspI	CCGCGG	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	15, 93, 267, 343, 535
LmnI	GCTCC	5 cut(s)	31, 137, 254, 333, 358
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	425, 436, 494
MalI	GATC	5 cut(s)	17, 95, 269, 345, 537
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	5 cut(s)	15, 93, 267, 343, 535
MflI	RGATCY	2 cut(s)	93, 267
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	2 cut(s)	598, 625
MlyI	GAGTC	3 cut(s)	380, 467, 620
MmeI	TCCRAC	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	3 cut(s)	240, 524, 560
MspR9I	CCNGG	5 cut(s)	272, 286, 331, 524, 525
MvaI	CCWGG	3 cut(s)	272, 286, 331
MvnI	CGCG	5 cut(s)	114, 160, 173, 192, 503
MwoI	GCNNNNNNNGC	8 cut(s)	31, 75, 117, 161, 170, 192, 281, 290
NciI	CCSGG	2 cut(s)	524, 525
NdeII	GATC	5 cut(s)	15, 93, 267, 343, 535
NlaIII	CATG	2 cut(s)	355, 412
NlaIV	GGNNCC	6 cut(s)	133, 327, 335, 400, 401, 564
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	425, 436
NotI	GCGGCCGC	2 cut(s)	193, 244
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 297, 374
PflFI	GACNNNGTC	1 cut(s)	370
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	3 cut(s)	379, 466, 619
PpsI	GAGTC	3 cut(s)	379, 466, 619
PpuMI	RGGWCCY	2 cut(s)	325, 399
PshAI	GACNNNNGTC	1 cut(s)	404
Psp1406I	AACGTT	1 cut(s)	482
Psp5II	RGGWCCY	2 cut(s)	325, 399
Psp6I	CCWGG	3 cut(s)	270, 284, 329
PspGI	CCWGG	3 cut(s)	270, 284, 329
PspN4I	GGNNCC	6 cut(s)	133, 327, 335, 400, 401, 564
PspPI	GGNCC	2 cut(s)	325, 399
PspPPI	RGGWCCY	2 cut(s)	325, 399
PsrI	GAACNNNNNNTAC	2 cut(s)	503, 535
PsuI	RGATCY	2 cut(s)	93, 267
PsyI	GACNNNGTC	1 cut(s)	370
PvuI	CGATCG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	193
Sau3AI	GATC	5 cut(s)	15, 93, 267, 343, 535
Sau96I	GGNCC	2 cut(s)	325, 399
SchI	GAGTC	3 cut(s)	380, 467, 620
ScrFI	CCNGG	5 cut(s)	272, 286, 331, 524, 525
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	58, 290, 327, 485, 568, 607
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	193
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	325, 399
SmaI	CCCGGG	1 cut(s)	525
Sse9I	AATT	2 cut(s)	598, 625
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	5 cut(s)	270, 284, 329, 522, 523
TaaI	ACNGT	3 cut(s)	416, 442, 545
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	598, 625
TatI	WGTACW	1 cut(s)	48
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	425, 436
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	425, 436
TspGWI	ACGGA	3 cut(s)	370, 383, 521
TspMI	CCCGGG	1 cut(s)	523
TspRI	CASTG	1 cut(s)	421
Tth111I	GACNNNGTC	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	325, 399
XapI	RAATTY	2 cut(s)	598, 625
XmaI	CCCGGG	1 cut(s)	523
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.