Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Forward (+)

18466162 .. 18467172

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G194400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGAAGCAGCAGCAGACCATCGGGAAGCCCTCGGAGCGAAACGACTTCAAGTACAAGGGAGTACGGAAGCGCAAGTGGGGCAAATGGGTATCCGAAATCCGCCTACCCAACAGCCGCGAGCGAATCTGGCTTGGCTCCTACGACTCCGCCGAGAAGGCGGCTCGAGCTTTCGACGCCGCGCTTTTCTGCCTGCGCGGCCGCACCGCCAAGTTTAATTTCCCCGACAACCCGCCCGATATTTCGGGCGGTCGGACGCTCAGCCGGGCAGAGATCCAGGCCGAGGCGGCAAGGTTTGCAAATTCGGAGCCTCAGACAACCCAGCACCACTCGGATCATTCGATGTCGGAGTTGCAGACGGAGTCTCAGTCTCAGTCTCCATCCCCGTCGGTGTCGGAGGGGAGTGGAACCGTCCCGATGGACAGTGATTTTCAAGTGACTCAAAACGATTCGTTTTCGGATCTTTTTAGGTCGTTCGGGTCGGGTAATTACGCAACGGAATACGGGTTGTTTCCGGGATTTGATGAGCTGAATGGGCAGTTTTTCAGTCCAGCAACGACAGAGCCAACGACAGGCGTTGATTACTACGCGGAAGAGAACTTGGACGGCGTTACACCGGGTCAGGGGTCTTTCCTCTGGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

216

Amino Acids

23.98

Weight (kDa)

5.16

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	120, 182, 198, 590
AclWI	GGATC	3 cut(s)	268, 342, 468
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	301, 640
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	56, 66
AfiI	CCNNNNNNNGG	3 cut(s)	283, 572, 623
AgsI	TTSAA	2 cut(s)	52, 434
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	2 cut(s)	170, 529
AluI	AGCT	2 cut(s)	170, 529
Alw26I	GTCTC	3 cut(s)	369, 375, 381
AlwI	GGATC	3 cut(s)	268, 342, 468
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	199, 279
ApeKI	GCWGC	2 cut(s)	10, 13
ApoI	RAATTY	2 cut(s)	301, 640
AspLEI	GCGC	3 cut(s)	75, 184, 198
AsuC2I	CCSGG	3 cut(s)	266, 516, 618
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	22, 25
BccI	CCATC	3 cut(s)	29, 388, 412
BceAI	ACGGC	1 cut(s)	622
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	3 cut(s)	266, 516, 618
BcoDI	GTCTC	3 cut(s)	369, 375, 381
BfuI	GTATCC	1 cut(s)	103
BglI	GCCNNNNNGGC	3 cut(s)	158, 198, 287
BisI	GCNGC	8 cut(s)	11, 14, 118, 162, 180, 199, 202, 288
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	8 cut(s)	12, 15, 119, 163, 181, 200, 203, 289
Bme1390I	CCNGG	4 cut(s)	266, 278, 516, 618
BmeT110I	CYCGRG	1 cut(s)	165
BmiI	GGNNCC	3 cut(s)	139, 309, 409
BmrFI	CCNGG	4 cut(s)	266, 278, 516, 618
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuMI	CCSGG	3 cut(s)	266, 516, 618
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	33, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 572, 623
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	33, 282
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	3 cut(s)	283, 572, 623
BseMII	CTCAG	4 cut(s)	274, 326, 380, 386
BseX3I	CGGCCG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	22, 25
BseYI	CCCAGC	1 cut(s)	321
Bsh1236I	CGCG	4 cut(s)	120, 182, 198, 590
Bsh1285I	CGRYCG	2 cut(s)	202, 253
BshFI	GGCC	2 cut(s)	201, 281
BsiEI	CGRYCG	2 cut(s)	202, 253
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	265, 515, 617
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	283, 572, 623
BsmAI	GTCTC	3 cut(s)	369, 375, 381
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	201, 281
BsoBI	CYCGRG	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	273, 334, 460
Bsp1720I	GCTNAGC	1 cut(s)	260
BspANI	GGCC	2 cut(s)	201, 281
BspCNI	CTCAG	4 cut(s)	273, 325, 379, 385
BspFNI	CGCG	4 cut(s)	120, 182, 198, 590
BspLI	GGNNCC	3 cut(s)	139, 309, 409
BspPI	GGATC	3 cut(s)	268, 342, 468
BssECI	CCNNGG	2 cut(s)	33, 282
BssMI	GATC	3 cut(s)	273, 334, 460
BssNI	GRCGYC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	412, 425
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	122, 194
BstDEI	CTNAG	4 cut(s)	260, 312, 366, 372
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	4 cut(s)	120, 182, 198, 590
BstHHI	GCGC	3 cut(s)	75, 184, 198
BstKTI	GATC	3 cut(s)	276, 337, 463
BstMAI	GTCTC	3 cut(s)	369, 375, 381
BstMBI	GATC	3 cut(s)	273, 334, 460
BstMCI	CGRYCG	2 cut(s)	202, 253
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	4 cut(s)	264, 276, 514, 616
BstUI	CGCG	4 cut(s)	120, 182, 198, 590
BstV1I	GCAGC	2 cut(s)	22, 25
BstX2I	RGATCY	2 cut(s)	273, 460
BstYI	RGATCY	2 cut(s)	273, 460
BstZI	CGGCCG	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	201, 281
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	122, 194
CciNI	GCGGCCGC	1 cut(s)	199
CfoI	GCGC	3 cut(s)	75, 184, 198
CseI	GACGC	2 cut(s)	185, 265
Csp6I	GTAC	2 cut(s)	55, 65
CviQI	GTAC	2 cut(s)	55, 65
DdeI	CTNAG	4 cut(s)	260, 312, 366, 372
DpnI	GATC	3 cut(s)	275, 336, 462
DpnII	GATC	3 cut(s)	273, 334, 460
EaeI	YGGCCR	1 cut(s)	199
EagI	CGGCCG	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
EciI	GGCGGA	2 cut(s)	92, 139
EclXI	CGGCCG	1 cut(s)	199
Eco52I	CGGCCG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	276
FaqI	GGGAC	1 cut(s)	398
FauI	CCCGC	1 cut(s)	240
Fnu4HI	GCNGC	8 cut(s)	11, 14, 118, 162, 180, 199, 202, 288
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	8 cut(s)	11, 14, 118, 162, 180, 199, 202, 288
GlaI	GCGC	3 cut(s)	74, 183, 197
GluI	GCNGC	8 cut(s)	11, 14, 118, 162, 180, 199, 202, 288
GsaI	CCCAGC	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	201, 281
HapII	CCGG	3 cut(s)	265, 515, 617
HgaI	GACGC	2 cut(s)	185, 265
HhaI	GCGC	3 cut(s)	75, 184, 198
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	3 cut(s)	73, 182, 196
HinP1I	GCGC	3 cut(s)	73, 182, 196
HinfI	GANTC	5 cut(s)	126, 146, 362, 439, 449
HpaII	CCGG	3 cut(s)	265, 515, 617
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	9 cut(s)	37, 97, 255, 307, 315, 334, 349, 397, 460
Hpy188III	TCNNGA	3 cut(s)	25, 415, 637
Hpy99I	CGWCG	2 cut(s)	179, 391
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	412, 425
HpyCH4V	TGCA	2 cut(s)	299, 355
HpyF3I	CTNAG	4 cut(s)	260, 312, 366, 372
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	3 cut(s)	73, 182, 196
Kzo9I	GATC	3 cut(s)	273, 334, 460
LmnI	GCTCC	3 cut(s)	37, 143, 307
Lsp1109I	GCAGC	2 cut(s)	22, 25
MaeIII	GTNAC	2 cut(s)	436, 610
MalI	GATC	3 cut(s)	275, 336, 462
MboI	GATC	3 cut(s)	273, 334, 460
MboII	GAAGA	1 cut(s)	605
MflI	RGATCY	2 cut(s)	273, 460
MluCI	AATT	4 cut(s)	217, 301, 487, 640
MlyI	GAGTC	3 cut(s)	140, 371, 433
MmeI	TCCRAC	3 cut(s)	233, 327, 375
MnlI	CCTC	5 cut(s)	43, 277, 321, 391, 644
MseI	TTAA	1 cut(s)	216
MspI	CCGG	3 cut(s)	265, 515, 617
MspR9I	CCNGG	4 cut(s)	266, 278, 516, 618
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	4 cut(s)	120, 182, 198, 590
NciI	CCSGG	3 cut(s)	266, 516, 618
NdeII	GATC	3 cut(s)	273, 334, 460
NlaIV	GGNNCC	3 cut(s)	139, 309, 409
NmeAIII	GCCGAG	2 cut(s)	178, 307
NmuCI	GTSAC	1 cut(s)	436
NotI	GCGGCCGC	1 cut(s)	199
PaeR7I	CTCGAG	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 338
PfeI	GAWTC	2 cut(s)	126, 449
PflFI	GACNNNGTC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	8 cut(s)	12, 15, 119, 163, 181, 200, 203, 289
PleI	GAGTC	3 cut(s)	140, 370, 433
PpsI	GAGTC	3 cut(s)	140, 370, 433
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	139, 309, 409
PspXI	VCTCGAGB	1 cut(s)	165
PsuI	RGATCY	2 cut(s)	273, 460
PsyI	GACNNNGTC	1 cut(s)	361
RsaI	GTAC	2 cut(s)	56, 66
RsaNI	GTAC	2 cut(s)	55, 65
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	8 cut(s)	11, 14, 118, 162, 180, 199, 202, 288
Sau3AI	GATC	3 cut(s)	273, 334, 460
SchI	GAGTC	3 cut(s)	140, 371, 433
ScrFI	CCNGG	4 cut(s)	266, 278, 516, 618
SetI	ASST	4 cut(s)	172, 296, 473, 531
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	4 cut(s)	217, 301, 487, 640
StyD4I	CCNGG	4 cut(s)	264, 276, 514, 616
TaaI	ACNGT	2 cut(s)	412, 425
TaqI	TCGA	3 cut(s)	166, 174, 341
TasI	AATT	4 cut(s)	217, 301, 487, 640
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	6 cut(s)	120, 164, 182, 201, 204, 290
TfiI	GAWTC	2 cut(s)	126, 449
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	10, 13
Tsp45I	GTSAC	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	82, 374, 512
TspRI	CASTG	1 cut(s)	430
Tth111I	GACNNNGTC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	301, 640
XhoI	CTCGAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.