Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Reverse (-)

7623930 .. 7624637

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1096500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCAAACCACTTCTCCAAAATCTTTGATACGTCGTCGTCGTCGTCGTCGTCGTCCATGCTGAACCAGACGAGCGGGGAGCCCTCCGAGCGAAACGACGTCAAGTACAAGGGCGTCCGCAAGCGTAAGTGGGGCAAATGGGTGTCGGAAATCCGCCTCCCCAACTGCCGCGAGAGAATCTGGTTGGGATCCTATGACACGCCAGAGAAGGCGGCGCGTGCCTTCGACGCGGCACTCTTTTGCTTACGTGGTCGCACCGCCAAGTTTAATTTCCCCGACAACCCGCCGGATATTCCTGGGGGAAGGTCGCTGAGCCCTGCCGAGATCCAGGTCGAGGCGGCGAGGTTCGCGAATTCGGAGATTCCGAGGAGCCACCAGTCGATGTCGGCGCCGCAGGCTGAGTGTCAGTCCATGTCGGAGTTGCAGGCCGAGTCTCAGTCTCCGTCCCTGTCGGAGGGCAGTGGGACCGCCTTCATGGACACTGATTTTCAAGTGACTCCAAACGAGTCGCTTTCGGACCTGTTTGGTTCATTCGGGTCGGGTAATTACGCCACGGAGTACGGTTTGTTTCCGGGATTTGATGAAATGAACGGTCAGTTTTTCAGTCCAGCATCGGCGGCACCAACGCCGGCCGTTGATTACGCGGAAGAGAACTTGGACGGTCAGTTTTTCAATCCGGCCCAGGAGTCTTTCCTCTGGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

25.92

Weight (kDa)

4.75

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	35 - 84	3.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AccB1I	GGYRCC	2 cut(s)	388, 619
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	5 cut(s)	171, 217, 230, 350, 644
AclWI	GGATC	3 cut(s)	183, 196, 319
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	352, 700
AcyI	GRCGYC	3 cut(s)	99, 114, 389
AfaI	GTAC	2 cut(s)	107, 560
AfiI	CCNNNNNNNGG	2 cut(s)	334, 454
AgsI	TTSAA	2 cut(s)	491, 673
AjnI	CCWGG	3 cut(s)	295, 327, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
Alw26I	GTCTC	2 cut(s)	438, 444
AlwI	GGATC	3 cut(s)	183, 196, 319
AoxI	GGCC	3 cut(s)	426, 630, 678
ApoI	RAATTY	2 cut(s)	352, 700
AspLEI	GCGC	2 cut(s)	217, 391
AspS9I	GGNCC	3 cut(s)	465, 517, 679
AsuC2I	CCSGG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	465, 517
BamHI	GGATCC	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	388, 619
BanII	GRGCYC	2 cut(s)	84, 317
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	3 cut(s)	297, 329, 683
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	438, 444
BfaI	CTAG	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	6 cut(s)	169, 213, 231, 339, 392, 618
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	6 cut(s)	170, 214, 232, 340, 393, 619
Bme1390I	CCNGG	4 cut(s)	297, 329, 573, 683
Bme18I	GGWCC	2 cut(s)	465, 517
BmgT120I	GGNCC	3 cut(s)	465, 517, 679
BmiI	GGNNCC	6 cut(s)	81, 190, 371, 390, 466, 621
BmrFI	CCNGG	4 cut(s)	297, 329, 573, 683
BmsI	GCATC	1 cut(s)	620
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	248
BsaHI	GRCGYC	3 cut(s)	99, 114, 389
BsaJI	CCNNGG	4 cut(s)	296, 365, 552, 681
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 454
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	3 cut(s)	297, 329, 683
BseDI	CCNNGG	4 cut(s)	296, 365, 552, 681
BseLI	CCNNNNNNNGG	2 cut(s)	334, 454
BseMII	CTCAG	3 cut(s)	302, 390, 449
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	382
BseX3I	CGGCCG	1 cut(s)	630
Bsh1236I	CGCG	5 cut(s)	171, 217, 230, 350, 644
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	428, 632, 680
BshNI	GGYRCC	2 cut(s)	388, 619
BsiEI	CGRYCG	1 cut(s)	633
BsiSI	CCGG	4 cut(s)	287, 572, 629, 677
BslFI	GGGAC	2 cut(s)	430, 478
BslI	CCNNNNNNNGG	2 cut(s)	334, 454
BsmAI	GTCTC	2 cut(s)	438, 444
BsmFI	GGGAC	2 cut(s)	430, 478
BsnI	GGCC	3 cut(s)	428, 632, 680
Bsp1286I	GDGCHC	2 cut(s)	84, 317
Bsp143I	GATC	2 cut(s)	188, 324
Bsp1720I	GCTNAGC	1 cut(s)	311
Bsp68I	TCGCGA	1 cut(s)	350
BspANI	GGCC	3 cut(s)	428, 632, 680
BspCNI	CTCAG	3 cut(s)	303, 391, 448
BspFNI	CGCG	5 cut(s)	171, 217, 230, 350, 644
BspLI	GGNNCC	6 cut(s)	81, 190, 371, 390, 466, 621
BspPI	GGATC	3 cut(s)	183, 196, 319
BspT107I	GGYRCC	2 cut(s)	388, 619
BsrBI	CCGCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	4 cut(s)	296, 365, 552, 681
BssMI	GATC	2 cut(s)	188, 324
BssNI	GRCGYC	3 cut(s)	99, 114, 389
Bst2UI	CCWGG	3 cut(s)	297, 329, 683
Bst4CI	ACNGT	3 cut(s)	563, 593, 662
Bst6I	CTCTTC	1 cut(s)	642
BstACI	GRCGYC	3 cut(s)	99, 114, 389
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	5 cut(s)	122, 219, 396, 426, 630
BstDEI	CTNAG	3 cut(s)	311, 399, 435
BstDSI	CCRYGG	1 cut(s)	552
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstFNI	CGCG	5 cut(s)	171, 217, 230, 350, 644
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	217, 391
BstKTI	GATC	2 cut(s)	191, 327
BstMAI	GTCTC	2 cut(s)	438, 444
BstMBI	GATC	2 cut(s)	188, 324
BstMCI	CGRYCG	1 cut(s)	633
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 218, 227, 347, 395, 617
BstNI	CCWGG	3 cut(s)	297, 329, 683
BstSCI	CCNGG	4 cut(s)	295, 327, 571, 681
BstUI	CGCG	5 cut(s)	171, 217, 230, 350, 644
BstX2I	RGATCY	2 cut(s)	188, 324
BstYI	RGATCY	2 cut(s)	188, 324
BstZI	CGGCCG	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	428, 632, 680
BtgI	CCRYGG	1 cut(s)	552
BtsI	GCAGTG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	466, 480
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	5 cut(s)	122, 219, 396, 426, 630
CfoI	GCGC	2 cut(s)	217, 391
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	465, 517, 679
CseI	GACGC	2 cut(s)	103, 236
Csp6I	GTAC	2 cut(s)	106, 559
CviAII	CATG	3 cut(s)	58, 412, 475
CviJI	RGCY	7 cut(s)	82, 315, 372, 398, 428, 632, 680
CviKI_1	RGCY	7 cut(s)	82, 315, 372, 398, 428, 632, 680
CviQI	GTAC	2 cut(s)	106, 559
DdeI	CTNAG	3 cut(s)	311, 399, 435
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	2 cut(s)	190, 326
DpnII	GATC	2 cut(s)	188, 324
EaeI	YGGCCR	1 cut(s)	630
EagI	CGGCCG	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	630
Eco24I	GRGCYC	2 cut(s)	84, 317
Eco47I	GGWCC	2 cut(s)	465, 517
Eco52I	CGGCCG	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	295, 327, 681
EcoT38I	GRGCYC	2 cut(s)	84, 317
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
FaeI	CATG	3 cut(s)	61, 415, 478
FaiI	YATR	4 cut(s)	59, 195, 413, 476
FaqI	GGGAC	2 cut(s)	430, 478
FatI	CATG	3 cut(s)	57, 411, 474
FauI	CCCGC	2 cut(s)	68, 291
Fnu4HI	GCNGC	6 cut(s)	169, 213, 231, 339, 392, 618
FriOI	GRGCYC	2 cut(s)	84, 317
Fsp4HI	GCNGC	6 cut(s)	169, 213, 231, 339, 392, 618
FspBI	CTAG	1 cut(s)	706
GlaI	GCGC	2 cut(s)	216, 390
GluI	GCNGC	6 cut(s)	169, 213, 231, 339, 392, 618
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	428, 632, 680
HapII	CCGG	4 cut(s)	287, 572, 629, 677
HgaI	GACGC	2 cut(s)	103, 236
HhaI	GCGC	2 cut(s)	217, 391
Hin1I	GRCGYC	3 cut(s)	99, 114, 389
Hin1II	CATG	3 cut(s)	61, 415, 478
Hin6I	GCGC	2 cut(s)	215, 389
HinP1I	GCGC	2 cut(s)	215, 389
HinfI	GANTC	6 cut(s)	177, 361, 431, 496, 506, 686
HpaII	CCGG	4 cut(s)	287, 572, 629, 677
Hpy188I	TCNGA	7 cut(s)	88, 148, 358, 366, 418, 454, 517
Hpy188III	TCNNGA	2 cut(s)	349, 697
Hpy99I	CGWCG	9 cut(s)	37, 40, 43, 46, 49, 52, 55, 101, 230
HpyAV	CCTTC	4 cut(s)	202, 232, 297, 481
HpyCH4III	ACNGT	3 cut(s)	563, 593, 662
HpyCH4IV	ACGT	3 cut(s)	32, 99, 247
HpyCH4V	TGCA	1 cut(s)	424
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 218, 227, 347, 395, 617
HpyF3I	CTNAG	3 cut(s)	311, 399, 435
HpySE526I	ACGT	3 cut(s)	32, 99, 247
Hsp92I	GRCGYC	3 cut(s)	99, 114, 389
Hsp92II	CATG	3 cut(s)	61, 415, 478
HspAI	GCGC	2 cut(s)	215, 389
KasI	GGCGCC	1 cut(s)	388
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	188, 324
LmnI	GCTCC	2 cut(s)	79, 369
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	1 cut(s)	706
MaeII	ACGT	3 cut(s)	32, 99, 247
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	2 cut(s)	190, 326
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	2 cut(s)	188, 324
MboII	GAAGA	1 cut(s)	659
MflI	RGATCY	2 cut(s)	188, 324
MhlI	GDGCHC	2 cut(s)	84, 317
MluCI	AATT	4 cut(s)	268, 352, 544, 700
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	4 cut(s)	440, 490, 515, 695
MmeI	TCCRAC	3 cut(s)	126, 396, 432
MnlI	CCTC	7 cut(s)	94, 167, 328, 336, 360, 448, 704
MroNI	GCCGGC	1 cut(s)	628
MseI	TTAA	1 cut(s)	267
MspI	CCGG	4 cut(s)	287, 572, 629, 677
MspR9I	CCNGG	4 cut(s)	297, 329, 573, 683
MvaI	CCWGG	3 cut(s)	297, 329, 683
MvnI	CGCG	5 cut(s)	171, 217, 230, 350, 644
MwoI	GCNNNNNNNGC	6 cut(s)	88, 218, 227, 347, 395, 617
NaeI	GCCGGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	2 cut(s)	188, 324
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	3 cut(s)	61, 415, 478
NlaIV	GGNNCC	6 cut(s)	81, 190, 371, 390, 466, 621
NmeAIII	GCCGAG	2 cut(s)	346, 454
NmuCI	GTSAC	1 cut(s)	493
NruI	TCGCGA	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	6 cut(s)	38, 41, 44, 47, 50, 362
PdiI	GCCGGC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	177, 361
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	6 cut(s)	170, 214, 232, 340, 393, 619
PleI	GAGTC	4 cut(s)	439, 490, 514, 694
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	4 cut(s)	439, 490, 514, 694
Ppu21I	YACGTR	1 cut(s)	248
Psp6I	CCWGG	3 cut(s)	295, 327, 681
PspGI	CCWGG	3 cut(s)	295, 327, 681
PspN4I	GGNNCC	6 cut(s)	81, 190, 371, 390, 466, 621
PspPI	GGNCC	3 cut(s)	465, 517, 679
PsuI	RGATCY	2 cut(s)	188, 324
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	2 cut(s)	107, 560
RsaNI	GTAC	2 cut(s)	106, 559
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	6 cut(s)	169, 213, 231, 339, 392, 618
Sau3AI	GATC	2 cut(s)	188, 324
Sau96I	GGNCC	3 cut(s)	465, 517, 679
SchI	GAGTC	4 cut(s)	440, 490, 515, 695
ScrFI	CCNGG	4 cut(s)	297, 329, 573, 683
SduI	GDGCHC	2 cut(s)	84, 317
SetI	ASST	7 cut(s)	35, 102, 250, 308, 333, 347, 522
SfaNI	GCATC	1 cut(s)	620
SfoI	GGCGCC	1 cut(s)	390
SinI	GGWCC	2 cut(s)	465, 517
Sse9I	AATT	4 cut(s)	268, 352, 544, 700
SspDI	GGCGCC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	706
StyD4I	CCNGG	4 cut(s)	295, 327, 571, 681
TaaI	ACNGT	3 cut(s)	563, 593, 662
TaiI	ACGT	3 cut(s)	35, 102, 250
TaqI	TCGA	3 cut(s)	225, 333, 380
TasI	AATT	4 cut(s)	268, 352, 544, 700
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	6 cut(s)	171, 215, 233, 341, 394, 620
TfiI	GAWTC	2 cut(s)	177, 361
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	466, 487
TseFI	GTSAC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	4 cut(s)	463, 519, 597, 602
TspGWI	ACGGA	2 cut(s)	432, 569
TspRI	CASTG	2 cut(s)	466, 487
VpaK11BI	GGWCC	2 cut(s)	465, 517
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	2 cut(s)	352, 700
XspI	CTAG	1 cut(s)	706
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.