Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Forward (+)

4892045 .. 4893214

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTGATGAAGCAGTCGATTATAGGGAATCAGTCGGAGCAAAACAACAACGATGCCAAGTACAAAGGCGTCCGGAAGCGCAAGTGGGGCAAATGGGTTTCCGAGATCCGCCTCCCCAACAGCCGCGAACGTATCTGGTTGGGGTCCTACGACACCCCAGAGAAGGCGGCGCGTGCCTTCGACGCGGCTCTCTACTGCCTCCGCGGCCGCACAGCCAAGTTCAACTTCCCCGACAACCCTCCGGAAATCTCCGGCGGACGTTCCCTCTCCCCCGCCGAAATCCAGGCCGAGGCAGCCAGGTTTGCTAATAACGAGGCCGATCCTCTTATTCCTCCGCCGCAGGTTCCAAGGAGCCACTCGGATTTGTCCATGTCGGAGCAGCGCACGGAGGAGTCGCCGTCGGTCTCGGAGGGAAGTGGGACCCTTGTCATGGACAGTGCTAGCGACTTTAGCGTGACCGTGAACCAAACCGAGGAGTCGTTTTCCGACTTGTTTAGGACGTTCGGGTCCGGTAACTACGCGTCGGAGTATGGATTGTTCCCGGGTTTTGACGATCTCAACGGTCAGTTTTTCAGTCCGGCACCTCAAACGCCGGCCGATGATTACGCCGAGGAGAGTCTAGCCCAGGAGTCGTTCCTCTGGAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

217

Amino Acids

24.04

Weight (kDa)

4.69

Isoelectric Point (pI)

63.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 69	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	580
AccII	CGCG	5 cut(s)	126, 172, 185, 204, 521
AccIII	TCCGGA	2 cut(s)	72, 241
AclWI	GGATC	2 cut(s)	100, 314
AcoI	YGGCCR	2 cut(s)	205, 594
AcsI	RAATTY	1 cut(s)	643
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	4 cut(s)	163, 289, 430, 472
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	3 cut(s)	282, 296, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	100, 314
Ama87I	CYCGRG	1 cut(s)	541
Aor13HI	TCCGGA	2 cut(s)	72, 241
AoxI	GGCC	4 cut(s)	205, 285, 315, 594
ApeKI	GCWGC	2 cut(s)	293, 379
ApoI	RAATTY	1 cut(s)	643
AspLEI	GCGC	3 cut(s)	81, 172, 384
AspS9I	GGNCC	3 cut(s)	144, 420, 507
AsuC2I	CCSGG	2 cut(s)	542, 543
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	3 cut(s)	144, 420, 507
BanI	GGYRCC	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	305, 391
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	3 cut(s)	284, 298, 626
BcnI	CCSGG	2 cut(s)	542, 543
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	441, 620
BfuAI	ACCTGC	1 cut(s)	331
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	8 cut(s)	124, 168, 186, 205, 208, 294, 338, 380
BlsI	GCNGC	8 cut(s)	125, 169, 187, 206, 209, 295, 339, 381
Bme1390I	CCNGG	5 cut(s)	284, 298, 542, 543, 626
Bme18I	GGWCC	3 cut(s)	144, 420, 507
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	144, 420, 507
BmiI	GGNNCC	7 cut(s)	145, 345, 353, 421, 422, 508, 582
BmrFI	CCNGG	5 cut(s)	284, 298, 542, 543, 626
BmsI	GCATC	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	444
BoxI	GACNNNNGTC	1 cut(s)	425
BpuMI	CCSGG	2 cut(s)	542, 543
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	7 cut(s)	202, 288, 347, 471, 541, 609, 624
BsaWI	WCCGGW	3 cut(s)	72, 241, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 289, 430, 472
Bse118I	RCCGGY	1 cut(s)	592
BseAI	TCCGGA	2 cut(s)	72, 241
BseBI	CCWGG	3 cut(s)	284, 298, 626
BseDI	CCNNGG	7 cut(s)	202, 288, 347, 471, 541, 609, 624
BseLI	CCNNNNNNNGG	4 cut(s)	163, 289, 430, 472
BseRI	GAGGAG	3 cut(s)	404, 488, 626
BseX3I	CGGCCG	2 cut(s)	205, 594
BseXI	GCAGC	2 cut(s)	305, 391
Bsh1236I	CGCG	5 cut(s)	126, 172, 185, 204, 521
Bsh1285I	CGRYCG	2 cut(s)	208, 597
BshFI	GGCC	4 cut(s)	207, 287, 317, 596
BshNI	GGYRCC	1 cut(s)	580
BsiEI	CGRYCG	2 cut(s)	208, 597
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	7 cut(s)	73, 242, 252, 510, 542, 578, 593
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	4 cut(s)	163, 289, 430, 472
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	207, 287, 317, 596
Bso31I	GGTCTC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	541
Bsp13I	TCCGGA	2 cut(s)	72, 241
Bsp143I	GATC	3 cut(s)	105, 319, 553
BspANI	GGCC	4 cut(s)	207, 287, 317, 596
BspEI	TCCGGA	2 cut(s)	72, 241
BspFNI	CGCG	5 cut(s)	126, 172, 185, 204, 521
BspLI	GGNNCC	7 cut(s)	145, 345, 353, 421, 422, 508, 582
BspMI	ACCTGC	1 cut(s)	331
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	100, 314
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	7 cut(s)	202, 288, 347, 471, 541, 609, 624
BssMI	GATC	3 cut(s)	105, 319, 553
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	3 cut(s)	284, 298, 626
Bst4CI	ACNGT	3 cut(s)	437, 460, 563
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	174, 442, 594
BstDSI	CCRYGG	1 cut(s)	202
BstFNI	CGCG	5 cut(s)	126, 172, 185, 204, 521
BstHHI	GCGC	3 cut(s)	81, 172, 384
BstKTI	GATC	3 cut(s)	108, 322, 556
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	105, 319, 553
BstMCI	CGRYCG	2 cut(s)	208, 597
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 173, 182, 204, 293, 302, 450
BstNI	CCWGG	3 cut(s)	284, 298, 626
BstPAI	GACNNNNGTC	1 cut(s)	425
BstSCI	CCNGG	5 cut(s)	282, 296, 540, 541, 624
BstUI	CGCG	5 cut(s)	126, 172, 185, 204, 521
BstV1I	GCAGC	2 cut(s)	305, 391
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZI	CGGCCG	2 cut(s)	205, 594
BsuRI	GGCC	4 cut(s)	207, 287, 317, 596
BtgI	CCRYGG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	174, 442, 594
CciNI	GCGGCCGC	1 cut(s)	205
CfoI	GCGC	3 cut(s)	81, 172, 384
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	3 cut(s)	144, 420, 507
Cfr42I	CCGCGG	1 cut(s)	205
Cfr9I	CCCGGG	1 cut(s)	541
CseI	GACGC	3 cut(s)	58, 191, 510
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	370, 430
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	3 cut(s)	107, 321, 555
DpnII	GATC	3 cut(s)	105, 319, 553
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	205, 594
EagI	CGGCCG	2 cut(s)	205, 594
EciI	GGCGGA	3 cut(s)	98, 270, 324
EclXI	CGGCCG	2 cut(s)	205, 594
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	409
Eco47I	GGWCC	3 cut(s)	144, 420, 507
Eco52I	CGGCCG	2 cut(s)	205, 594
Eco88I	CYCGRG	1 cut(s)	541
EcoO109I	RGGNCCY	2 cut(s)	144, 420
EcoRII	CCWGG	3 cut(s)	282, 296, 624
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	2 cut(s)	373, 433
FaiI	YATR	4 cut(s)	23, 371, 431, 531
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	369, 429
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	8 cut(s)	124, 168, 186, 205, 208, 294, 338, 380
Fsp4HI	GCNGC	8 cut(s)	124, 168, 186, 205, 208, 294, 338, 380
FspBI	CTAG	2 cut(s)	441, 620
GlaI	GCGC	3 cut(s)	80, 171, 383
GluI	GCNGC	8 cut(s)	124, 168, 186, 205, 208, 294, 338, 380
HaeIII	GGCC	4 cut(s)	207, 287, 317, 596
HapII	CCGG	7 cut(s)	73, 242, 252, 510, 542, 578, 593
HgaI	GACGC	3 cut(s)	58, 191, 510
HhaI	GCGC	3 cut(s)	81, 172, 384
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	373, 433
Hin6I	GCGC	3 cut(s)	79, 170, 382
HinP1I	GCGC	3 cut(s)	79, 170, 382
HinfI	GANTC	5 cut(s)	28, 392, 476, 616, 629
HpaII	CCGG	7 cut(s)	73, 242, 252, 510, 542, 578, 593
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	7 cut(s)	37, 103, 361, 376, 409, 487, 526
Hpy188III	TCNNGA	3 cut(s)	73, 242, 640
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	3 cut(s)	185, 403, 526
HpyAV	CCTTC	2 cut(s)	157, 187
HpyCH4III	ACNGT	3 cut(s)	437, 460, 563
HpyCH4IV	ACGT	3 cut(s)	130, 259, 500
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 173, 182, 204, 293, 302, 450
HpySE526I	ACGT	3 cut(s)	130, 259, 500
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	373, 433
HspAI	GCGC	3 cut(s)	79, 170, 382
KflI	GGGWCCC	1 cut(s)	420
Kpn2I	TCCGGA	2 cut(s)	72, 241
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	105, 319, 553
LmnI	GCTCC	3 cut(s)	37, 351, 376
Lsp1109I	GCAGC	2 cut(s)	305, 391
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	441, 620
MaeII	ACGT	3 cut(s)	130, 259, 500
MaeIII	GTNAC	2 cut(s)	454, 512
MalI	GATC	3 cut(s)	107, 321, 555
MboI	GATC	3 cut(s)	105, 319, 553
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	1 cut(s)	643
MluI	ACGCGT	1 cut(s)	519
MlyI	GAGTC	4 cut(s)	401, 485, 625, 638
MmeI	TCCRAC	4 cut(s)	15, 354, 504, 510
MroI	TCCGGA	2 cut(s)	72, 241
MroNI	GCCGGC	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	7 cut(s)	73, 242, 252, 510, 542, 578, 593
MspR9I	CCNGG	5 cut(s)	284, 298, 542, 543, 626
MvaI	CCWGG	3 cut(s)	284, 298, 626
MvnI	CGCG	5 cut(s)	126, 172, 185, 204, 521
MwoI	GCNNNNNNNGC	7 cut(s)	87, 173, 182, 204, 293, 302, 450
NaeI	GCCGGC	1 cut(s)	594
NciI	CCSGG	2 cut(s)	542, 543
NdeII	GATC	3 cut(s)	105, 319, 553
NgoMIV	GCCGGC	1 cut(s)	592
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	373, 433
NlaIV	GGNNCC	7 cut(s)	145, 345, 353, 421, 422, 508, 582
NmeAIII	GCCGAG	2 cut(s)	313, 634
NmuCI	GTSAC	1 cut(s)	454
NotI	GCGGCCGC	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	8 cut(s)	125, 169, 187, 206, 209, 295, 339, 381
PleI	GAGTC	4 cut(s)	400, 484, 624, 637
PpsI	GAGTC	4 cut(s)	400, 484, 624, 637
PpuMI	RGGWCCY	2 cut(s)	144, 420
PshAI	GACNNNNGTC	1 cut(s)	425
Psp5II	RGGWCCY	2 cut(s)	144, 420
Psp6I	CCWGG	3 cut(s)	282, 296, 624
PspGI	CCWGG	3 cut(s)	282, 296, 624
PspN4I	GGNNCC	7 cut(s)	145, 345, 353, 421, 422, 508, 582
PspPI	GGNCC	3 cut(s)	144, 420, 507
PspPPI	RGGWCCY	2 cut(s)	144, 420
PsrI	GAACNNNNNNTAC	2 cut(s)	521, 553
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacII	CCGCGG	1 cut(s)	205
SatI	GCNGC	8 cut(s)	124, 168, 186, 205, 208, 294, 338, 380
Sau3AI	GATC	3 cut(s)	105, 319, 553
Sau96I	GGNCC	3 cut(s)	144, 420, 507
SchI	GAGTC	4 cut(s)	401, 485, 625, 638
ScrFI	CCNGG	5 cut(s)	284, 298, 542, 543, 626
SetI	ASST	6 cut(s)	133, 262, 302, 345, 503, 586
SfaNI	GCATC	1 cut(s)	43
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	3 cut(s)	144, 420, 507
SmaI	CCCGGG	1 cut(s)	543
Sse9I	AATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	441, 620
StyD4I	CCNGG	5 cut(s)	282, 296, 540, 541, 624
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	437, 460, 563
TaiI	ACGT	3 cut(s)	133, 262, 503
TaqI	TCGA	2 cut(s)	17, 180
TaqII	GACCGA	1 cut(s)	391
TasI	AATT	1 cut(s)	643
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	6 cut(s)	126, 170, 188, 207, 210, 340
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	2 cut(s)	293, 379
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	401
TspMI	CCCGGG	1 cut(s)	541
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	3 cut(s)	144, 420, 507
XapI	RAATTY	1 cut(s)	643
XmaI	CCCGGG	1 cut(s)	541
XspI	CTAG	2 cut(s)	441, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.