Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Reverse (-)

5354957 .. 5355655

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCAAACCACTTCTCCAAAATTTTTGATACGTCGTCGTCGTCCATGTTGAACCAGACGAGCGGGGAGCCCTCCGAGCGAAACGACGTGAAGTACAAGGGCGTCCGCAAGCGCAAGTGGGGCAAATGGGTGTCGGAAATCCGCCTCCCCAACAGCCGCGAGAGAATCTGGTTGGGATCCTATGACACGCCAGAGAAGGCGGCGCGTGCCTTCGACGCGGCACTCTTTTGCTTACGTGGTCGCACCGCCAAGTTTAATTTCCCCGACAACCCGCCGGATATTCCTGGGGGAAGGTCGCTGAGCCCTGCCGAGATCCAAGTCGAGGCGGCGAGGTTCGCGAATTCGGAGATTCCGCGGAGCCACCAGTCGATGTCGGCGCCGCAGGCTGAGTGTCAGTCGATGTCGGAGTTACAGGCGGAGTCTCAGTCTCCGTCCCTGTCGGAGGGCAGTGGGACCGCCTTCATGGACACTGATTTTCAAGTGACTCCAAACGAGTCGTTTTCGGACCTGTTTGGGACATTCGGGTCTGGTAATTACGCCACGGAGTACGGTTTGTTTCCGGGATTTGATGAAATGAACGGTCAGTTTTTCAGTCCAGCTTCGGCGGCGCCAACGCCGGCCGTTGATTACTACGCGGAAGAGAACTTGGACGGTCAGTTTTTCAATCCGGCCCAGGAGTCTTTCCTCTGGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

25.76

Weight (kDa)

4.75

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	31 - 80	4.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
AccB1I	GGYRCC	2 cut(s)	376, 607
AccBSI	CCGCTC	1 cut(s)	63
AccII	CGCG	6 cut(s)	159, 205, 218, 338, 355, 635
AclWI	GGATC	3 cut(s)	171, 184, 307
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	3 cut(s)	21, 340, 691
AcyI	GRCGYC	3 cut(s)	102, 377, 608
AfaI	GTAC	2 cut(s)	95, 548
AfiI	CCNNNNNNNGG	2 cut(s)	322, 442
AgsI	TTSAA	3 cut(s)	52, 479, 664
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	283, 672
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw26I	GTCTC	2 cut(s)	426, 432
AlwI	GGATC	3 cut(s)	171, 184, 307
AoxI	GGCC	2 cut(s)	618, 669
ApoI	RAATTY	3 cut(s)	21, 340, 691
AspLEI	GCGC	4 cut(s)	114, 205, 379, 610
AspS9I	GGNCC	3 cut(s)	453, 505, 670
AsuC2I	CCSGG	1 cut(s)	561
AvaII	GGWCC	2 cut(s)	453, 505
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	376, 607
BanII	GRGCYC	2 cut(s)	72, 305
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	2 cut(s)	285, 674
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	426, 432
BfaI	CTAG	1 cut(s)	697
BfoI	RGCGCY	2 cut(s)	380, 611
BisI	GCNGC	6 cut(s)	157, 201, 219, 327, 380, 606
BlpI	GCTNAGC	1 cut(s)	299
BlsI	GCNGC	6 cut(s)	158, 202, 220, 328, 381, 607
Bme1390I	CCNGG	3 cut(s)	285, 561, 674
Bme18I	GGWCC	2 cut(s)	453, 505
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	453, 505, 670
BmiI	GGNNCC	6 cut(s)	69, 178, 359, 378, 454, 609
BmrFI	CCNGG	3 cut(s)	285, 561, 674
Bpu1102I	GCTNAGC	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	561
BsaAI	YACGTR	1 cut(s)	236
BsaHI	GRCGYC	3 cut(s)	102, 377, 608
BsaJI	CCNNGG	4 cut(s)	284, 353, 540, 672
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 442
Bse118I	RCCGGY	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	285, 674
BseDI	CCNNGG	4 cut(s)	284, 353, 540, 672
BseLI	CCNNNNNNNGG	2 cut(s)	322, 442
BseMII	CTCAG	3 cut(s)	290, 378, 437
BseNI	ACTGG	1 cut(s)	364
BseX3I	CGGCCG	1 cut(s)	618
Bsh1236I	CGCG	6 cut(s)	159, 205, 218, 338, 355, 635
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	620, 671
BshNI	GGYRCC	2 cut(s)	376, 607
BsiEI	CGRYCG	1 cut(s)	621
BsiSI	CCGG	4 cut(s)	275, 560, 617, 668
BslFI	GGGAC	3 cut(s)	418, 466, 529
BslI	CCNNNNNNNGG	2 cut(s)	322, 442
BsmAI	GTCTC	2 cut(s)	426, 432
BsmFI	GGGAC	3 cut(s)	418, 466, 529
BsnI	GGCC	2 cut(s)	620, 671
Bsp1286I	GDGCHC	2 cut(s)	72, 305
Bsp143I	GATC	2 cut(s)	176, 312
Bsp1720I	GCTNAGC	1 cut(s)	299
Bsp68I	TCGCGA	1 cut(s)	338
BspANI	GGCC	2 cut(s)	620, 671
BspCNI	CTCAG	3 cut(s)	291, 379, 436
BspFNI	CGCG	6 cut(s)	159, 205, 218, 338, 355, 635
BspLI	GGNNCC	6 cut(s)	69, 178, 359, 378, 454, 609
BspPI	GGATC	3 cut(s)	171, 184, 307
BspT107I	GGYRCC	2 cut(s)	376, 607
BsrBI	CCGCTC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	4 cut(s)	284, 353, 540, 672
BssMI	GATC	2 cut(s)	176, 312
BssNI	GRCGYC	3 cut(s)	102, 377, 608
Bst2UI	CCWGG	2 cut(s)	285, 674
Bst4CI	ACNGT	3 cut(s)	551, 581, 653
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	3 cut(s)	102, 377, 608
BstBAI	YACGTR	1 cut(s)	236
BstC8I	GCNNGC	4 cut(s)	110, 207, 384, 618
BstDEI	CTNAG	3 cut(s)	299, 387, 423
BstDSI	CCRYGG	2 cut(s)	353, 540
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstFNI	CGCG	6 cut(s)	159, 205, 218, 338, 355, 635
BstH2I	RGCGCY	2 cut(s)	380, 611
BstHHI	GCGC	4 cut(s)	114, 205, 379, 610
BstKTI	GATC	2 cut(s)	179, 315
BstMAI	GTCTC	2 cut(s)	426, 432
BstMBI	GATC	2 cut(s)	176, 312
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 120, 206, 215, 335, 383, 605
BstNI	CCWGG	2 cut(s)	285, 674
BstSCI	CCNGG	3 cut(s)	283, 559, 672
BstUI	CGCG	6 cut(s)	159, 205, 218, 338, 355, 635
BstX2I	RGATCY	2 cut(s)	176, 312
BstYI	RGATCY	2 cut(s)	176, 312
BstZI	CGGCCG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	620, 671
BtgI	CCRYGG	2 cut(s)	353, 540
BtrI	CACGTC	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	454, 468
BtuMI	TCGCGA	1 cut(s)	338
Cac8I	GCNNGC	4 cut(s)	110, 207, 384, 618
CfoI	GCGC	4 cut(s)	114, 205, 379, 610
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	3 cut(s)	453, 505, 670
Cfr42I	CCGCGG	1 cut(s)	356
CseI	GACGC	2 cut(s)	91, 224
Csp6I	GTAC	2 cut(s)	94, 547
CviAII	CATG	2 cut(s)	46, 463
CviJI	RGCY	8 cut(s)	70, 156, 303, 360, 386, 599, 620, 671
CviKI_1	RGCY	8 cut(s)	70, 156, 303, 360, 386, 599, 620, 671
CviQI	GTAC	2 cut(s)	94, 547
DdeI	CTNAG	3 cut(s)	299, 387, 423
DinI	GGCGCC	2 cut(s)	378, 609
DpnI	GATC	2 cut(s)	178, 314
DpnII	GATC	2 cut(s)	176, 312
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	618
EagI	CGGCCG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
EciI	GGCGGA	2 cut(s)	131, 431
EclXI	CGGCCG	1 cut(s)	618
Eco24I	GRGCYC	2 cut(s)	72, 305
Eco47I	GGWCC	2 cut(s)	453, 505
Eco52I	CGGCCG	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	283, 672
EcoT38I	GRGCYC	2 cut(s)	72, 305
EgeI	GGCGCC	2 cut(s)	378, 609
EheI	GGCGCC	2 cut(s)	378, 609
FaeI	CATG	2 cut(s)	49, 466
FaiI	YATR	3 cut(s)	47, 183, 464
FaqI	GGGAC	3 cut(s)	418, 466, 529
FatI	CATG	2 cut(s)	45, 462
FauI	CCCGC	2 cut(s)	56, 279
Fnu4HI	GCNGC	6 cut(s)	157, 201, 219, 327, 380, 606
FriOI	GRGCYC	2 cut(s)	72, 305
Fsp4HI	GCNGC	6 cut(s)	157, 201, 219, 327, 380, 606
FspBI	CTAG	1 cut(s)	697
GlaI	GCGC	4 cut(s)	113, 204, 378, 609
GluI	GCNGC	6 cut(s)	157, 201, 219, 327, 380, 606
HaeII	RGCGCY	2 cut(s)	380, 611
HaeIII	GGCC	2 cut(s)	620, 671
HapII	CCGG	4 cut(s)	275, 560, 617, 668
HgaI	GACGC	2 cut(s)	91, 224
HhaI	GCGC	4 cut(s)	114, 205, 379, 610
Hin1I	GRCGYC	3 cut(s)	102, 377, 608
Hin1II	CATG	2 cut(s)	49, 466
Hin6I	GCGC	4 cut(s)	112, 203, 377, 608
HinP1I	GCGC	4 cut(s)	112, 203, 377, 608
HinfI	GANTC	6 cut(s)	165, 349, 419, 484, 494, 677
HpaII	CCGG	4 cut(s)	275, 560, 617, 668
Hpy188I	TCNGA	6 cut(s)	76, 136, 346, 406, 442, 505
Hpy188III	TCNNGA	2 cut(s)	337, 688
Hpy99I	CGWCG	5 cut(s)	37, 40, 43, 89, 218
HpyAV	CCTTC	4 cut(s)	190, 220, 285, 469
HpyCH4III	ACNGT	3 cut(s)	551, 581, 653
HpyCH4IV	ACGT	3 cut(s)	32, 87, 235
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 120, 206, 215, 335, 383, 605
HpyF3I	CTNAG	3 cut(s)	299, 387, 423
HpySE526I	ACGT	3 cut(s)	32, 87, 235
Hsp92I	GRCGYC	3 cut(s)	102, 377, 608
Hsp92II	CATG	2 cut(s)	49, 466
HspAI	GCGC	4 cut(s)	112, 203, 377, 608
KasI	GGCGCC	2 cut(s)	376, 607
KroI	GCCGGC	1 cut(s)	616
KroNI	GCCGGC	1 cut(s)	618
KspI	CCGCGG	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	176, 312
LmnI	GCTCC	2 cut(s)	67, 357
MaeI	CTAG	1 cut(s)	697
MaeII	ACGT	3 cut(s)	32, 87, 235
MaeIII	GTNAC	2 cut(s)	408, 481
MalI	GATC	2 cut(s)	178, 314
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	2 cut(s)	176, 312
MboII	GAAGA	1 cut(s)	650
MflI	RGATCY	2 cut(s)	176, 312
MhlI	GDGCHC	2 cut(s)	72, 305
MluCI	AATT	5 cut(s)	21, 256, 340, 532, 691
Mly113I	GGCGCC	2 cut(s)	377, 608
MlyI	GAGTC	4 cut(s)	428, 478, 503, 686
MmeI	TCCRAC	3 cut(s)	114, 384, 420
MnlI	CCTC	6 cut(s)	82, 155, 316, 324, 436, 695
MroNI	GCCGGC	1 cut(s)	616
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	4 cut(s)	275, 560, 617, 668
MspR9I	CCNGG	3 cut(s)	285, 561, 674
MvaI	CCWGG	2 cut(s)	285, 674
MvnI	CGCG	6 cut(s)	159, 205, 218, 338, 355, 635
MwoI	GCNNNNNNNGC	7 cut(s)	76, 120, 206, 215, 335, 383, 605
NaeI	GCCGGC	1 cut(s)	618
NarI	GGCGCC	2 cut(s)	377, 608
NciI	CCSGG	1 cut(s)	561
NdeII	GATC	2 cut(s)	176, 312
NgoMIV	GCCGGC	1 cut(s)	616
NlaIII	CATG	2 cut(s)	49, 466
NlaIV	GGNNCC	6 cut(s)	69, 178, 359, 378, 454, 609
NmeAIII	GCCGAG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	481
NruI	TCGCGA	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	618
PfeI	GAWTC	2 cut(s)	165, 349
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	6 cut(s)	158, 202, 220, 328, 381, 607
PleI	GAGTC	4 cut(s)	427, 478, 502, 685
PluTI	GGCGCC	2 cut(s)	380, 611
PpsI	GAGTC	4 cut(s)	427, 478, 502, 685
Ppu21I	YACGTR	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	283, 672
PspGI	CCWGG	2 cut(s)	283, 672
PspN4I	GGNNCC	6 cut(s)	69, 178, 359, 378, 454, 609
PspPI	GGNCC	3 cut(s)	453, 505, 670
PsuI	RGATCY	2 cut(s)	176, 312
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	2 cut(s)	95, 548
RsaNI	GTAC	2 cut(s)	94, 547
SacII	CCGCGG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	6 cut(s)	157, 201, 219, 327, 380, 606
Sau3AI	GATC	2 cut(s)	176, 312
Sau96I	GGNCC	3 cut(s)	453, 505, 670
SchI	GAGTC	4 cut(s)	428, 478, 503, 686
ScrFI	CCNGG	3 cut(s)	285, 561, 674
SduI	GDGCHC	2 cut(s)	72, 305
SetI	ASST	7 cut(s)	35, 90, 238, 296, 335, 510, 601
SfoI	GGCGCC	2 cut(s)	378, 609
Sfr303I	CCGCGG	1 cut(s)	356
SgrBI	CCGCGG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	453, 505
Sse9I	AATT	5 cut(s)	21, 256, 340, 532, 691
SspDI	GGCGCC	2 cut(s)	376, 607
SspMI	CTAG	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	283, 559, 672
TaaI	ACNGT	3 cut(s)	551, 581, 653
TaiI	ACGT	3 cut(s)	35, 90, 238
TaqI	TCGA	4 cut(s)	213, 321, 368, 398
TasI	AATT	5 cut(s)	21, 256, 340, 532, 691
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	6 cut(s)	159, 203, 221, 329, 382, 608
TfiI	GAWTC	2 cut(s)	165, 349
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	454, 475
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	451, 585, 590
TspGWI	ACGGA	2 cut(s)	420, 557
TspRI	CASTG	2 cut(s)	454, 475
VpaK11BI	GGWCC	2 cut(s)	453, 505
XagI	CCTNNNNNAGG	1 cut(s)	440
XapI	RAATTY	3 cut(s)	21, 340, 691
XspI	CTAG	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.