Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Reverse (-)

13970692 .. 13971315

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAAGCAGACGATCGGGAAGCCCTCCGAGCGAAACGACATCAAGTACAAGGGCGTCCGCAAGCGCAAGTGGGGCAAATGGGTGTCGGAAATCCGCCTCCCCAACAGCCGGGAGAGAATCTGGTTGGGATCCTACGACGCGCCCGAAAAGGCGGCGCGTGCCTTCGACGCGGCCCTCTTCTGCTTGCGCGGTCGCACCGCCAAGTTTAATTTCCCCGACAGCCCGCCTGAGATTTCGGGGGGAAGGTCCCTGAGCCCGGCCGAGATCCAGACCGAGGCGGCAAGGTTCGCGAATTCGGAGCTTCCGAGGAGCCACCAGTCGATGTCGGAGTTGCAGGCGGAGTCCCCGTCTCCGTCGGTGTCGGAGGGGAGTGGGACCGTCTTCGTGGACAGCGAATTTCTAGTGACTCCAAACGATTCGTTTTCGGACCCTTTTAGCACATTCGGGTCGGGTAATTACGCTACGGAGTACGGGTTGTTTCCGGGTTTTGATGAAATGAACTATCAATTTTTCAGTCCAGCTGAGGCGGTGCCAACGCCGGACGTTGATTACTACGCGGAAGAGAACCTGGACGGTCAGTTTTTCAGTCCGGCAGAGGAGTCTTTTCTCTGGAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

208

Amino Acids

23.19

Weight (kDa)

4.76

Isoelectric Point (pI)

70.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	16 - 65	9e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccII	CGCG	6 cut(s)	143, 160, 173, 192, 293, 560
AclWI	GGATC	3 cut(s)	126, 139, 262
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	3 cut(s)	295, 398, 616
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	50, 473
AfiI	CCNNNNNNNGG	3 cut(s)	111, 259, 277
AjnI	CCWGG	1 cut(s)	570
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	304, 524
AluI	AGCT	2 cut(s)	304, 524
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	126, 139, 262
AoxI	GGCC	2 cut(s)	174, 261
ApoI	RAATTY	3 cut(s)	295, 398, 616
AspLEI	GCGC	4 cut(s)	69, 145, 160, 192
AspS9I	GGNCC	4 cut(s)	175, 249, 378, 430
AsuC2I	CCSGG	3 cut(s)	113, 260, 486
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	249, 378, 430
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	525
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	3 cut(s)	113, 260, 486
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	2 cut(s)	404, 622
BisI	GCNGC	3 cut(s)	156, 174, 282
BlsI	GCNGC	3 cut(s)	157, 175, 283
Bme1390I	CCNGG	4 cut(s)	113, 260, 486, 572
Bme18I	GGWCC	3 cut(s)	249, 378, 430
BmgT120I	GGNCC	4 cut(s)	175, 249, 378, 430
BmiI	GGNNCC	6 cut(s)	133, 251, 314, 379, 432, 534
BmrFI	CCNGG	4 cut(s)	113, 260, 486, 572
BpiI	GAAGAC	1 cut(s)	376
Bpu10I	CCTNAGC	2 cut(s)	254, 525
BpuMI	CCSGG	3 cut(s)	113, 260, 486
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	276, 308
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 259, 277
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	2 cut(s)	276, 308
BseLI	CCNNNNNNNGG	3 cut(s)	111, 259, 277
BseMII	CTCAG	3 cut(s)	222, 245, 516
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	2 cut(s)	325, 614
BseX3I	CGGCCG	1 cut(s)	261
Bsh1236I	CGCG	6 cut(s)	143, 160, 173, 192, 293, 560
Bsh1285I	CGRYCG	3 cut(s)	18, 196, 264
BshFI	GGCC	2 cut(s)	176, 263
BshNI	GGYRCC	1 cut(s)	532
BsiEI	CGRYCG	3 cut(s)	18, 196, 264
BsiSI	CCGG	5 cut(s)	112, 260, 485, 542, 593
BslFI	GGGAC	3 cut(s)	235, 331, 391
BslI	CCNNNNNNNGG	3 cut(s)	111, 259, 277
BsmAI	GTCTC	1 cut(s)	357
BsmBI	CGTCTC	1 cut(s)	357
BsmFI	GGGAC	3 cut(s)	235, 331, 391
BsnI	GGCC	2 cut(s)	176, 263
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	15, 131, 267
Bsp68I	TCGCGA	1 cut(s)	293
BspANI	GGCC	2 cut(s)	176, 263
BspCNI	CTCAG	3 cut(s)	223, 246, 517
BspFNI	CGCG	6 cut(s)	143, 160, 173, 192, 293, 560
BspLI	GGNNCC	6 cut(s)	133, 251, 314, 379, 432, 534
BspPI	GGATC	3 cut(s)	126, 139, 262
BspT107I	GGYRCC	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	276, 308
BssMI	GATC	3 cut(s)	15, 131, 267
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	382, 578
Bst6I	CTCTTC	2 cut(s)	185, 558
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	5 cut(s)	65, 162, 188, 227, 339
BstDEI	CTNAG	3 cut(s)	231, 254, 525
BstFNI	CGCG	6 cut(s)	143, 160, 173, 192, 293, 560
BstHHI	GCGC	4 cut(s)	69, 145, 160, 192
BstKTI	GATC	3 cut(s)	18, 134, 270
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	3 cut(s)	15, 131, 267
BstMCI	CGRYCG	3 cut(s)	18, 196, 264
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 75, 161, 170, 290
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	111, 258, 484, 570
BstUI	CGCG	6 cut(s)	143, 160, 173, 192, 293, 560
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	2 cut(s)	131, 267
BstYI	RGATCY	2 cut(s)	131, 267
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	176, 263
BtuMI	TCGCGA	1 cut(s)	293
Cac8I	GCNNGC	5 cut(s)	65, 162, 188, 227, 339
CfoI	GCGC	4 cut(s)	69, 145, 160, 192
Cfr13I	GGNCC	4 cut(s)	175, 249, 378, 430
CseI	GACGC	3 cut(s)	46, 149, 179
Csp6I	GTAC	2 cut(s)	49, 472
CviJI	RGCY	9 cut(s)	25, 111, 176, 225, 258, 263, 304, 315, 524
CviKI_1	RGCY	9 cut(s)	25, 111, 176, 225, 258, 263, 304, 315, 524
CviQI	GTAC	2 cut(s)	49, 472
DdeI	CTNAG	3 cut(s)	231, 254, 525
DpnI	GATC	3 cut(s)	17, 133, 269
DpnII	GATC	3 cut(s)	15, 131, 267
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	185, 558
EarI	CTCTTC	2 cut(s)	185, 558
EciI	GGCGGA	2 cut(s)	86, 356
EclXI	CGGCCG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	3 cut(s)	249, 378, 430
Eco52I	CGGCCG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	357
FaqI	GGGAC	3 cut(s)	235, 331, 391
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	156, 174, 282
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	156, 174, 282
FspBI	CTAG	2 cut(s)	404, 622
GlaI	GCGC	4 cut(s)	68, 144, 159, 191
GluI	GCNGC	3 cut(s)	156, 174, 282
HaeIII	GGCC	2 cut(s)	176, 263
HapII	CCGG	5 cut(s)	112, 260, 485, 542, 593
HgaI	GACGC	3 cut(s)	46, 149, 179
HhaI	GCGC	4 cut(s)	69, 145, 160, 192
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	4 cut(s)	67, 143, 158, 190
HinP1I	GCGC	4 cut(s)	67, 143, 158, 190
HinfI	GANTC	5 cut(s)	120, 344, 409, 419, 602
HpaII	CCGG	5 cut(s)	112, 260, 485, 542, 593
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	7 cut(s)	31, 91, 301, 309, 331, 367, 430
Hpy188III	TCNNGA	4 cut(s)	19, 271, 292, 613
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	3 cut(s)	143, 173, 361
HpyAV	CCTTC	2 cut(s)	175, 240
HpyCH4III	ACNGT	2 cut(s)	382, 578
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 75, 161, 170, 290
HpyF3I	CTNAG	3 cut(s)	231, 254, 525
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	4 cut(s)	67, 143, 158, 190
Kzo9I	GATC	3 cut(s)	15, 131, 267
LmnI	GCTCC	2 cut(s)	301, 312
MaeI	CTAG	2 cut(s)	404, 622
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	17, 133, 269
MboI	GATC	3 cut(s)	15, 131, 267
MboII	GAAGA	3 cut(s)	172, 376, 575
MflI	RGATCY	2 cut(s)	131, 267
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	6 cut(s)	211, 295, 398, 457, 509, 616
MlyI	GAGTC	3 cut(s)	353, 403, 611
MmeI	TCCRAC	3 cut(s)	69, 309, 345
MnlI	CCTC	8 cut(s)	37, 110, 188, 271, 303, 361, 520, 592
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	5 cut(s)	112, 260, 485, 542, 593
MspR9I	CCNGG	4 cut(s)	113, 260, 486, 572
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	6 cut(s)	143, 160, 173, 192, 293, 560
MwoI	GCNNNNNNNGC	5 cut(s)	31, 75, 161, 170, 290
NciI	CCSGG	3 cut(s)	113, 260, 486
NdeII	GATC	3 cut(s)	15, 131, 267
NlaIV	GGNNCC	6 cut(s)	133, 251, 314, 379, 432, 534
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	406
NruI	TCGCGA	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 305, 393
PfeI	GAWTC	2 cut(s)	120, 419
PkrI	GCNGC	3 cut(s)	157, 175, 283
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	3 cut(s)	352, 403, 610
PpsI	GAGTC	3 cut(s)	352, 403, 610
PpuMI	RGGWCCY	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	6 cut(s)	133, 251, 314, 379, 432, 534
PspPI	GGNCC	4 cut(s)	175, 249, 378, 430
PspPPI	RGGWCCY	1 cut(s)	249
PsuI	RGATCY	2 cut(s)	131, 267
PvuI	CGATCG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	524
RruI	TCGCGA	1 cut(s)	293
RsaI	GTAC	2 cut(s)	50, 473
RsaNI	GTAC	2 cut(s)	49, 472
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	156, 174, 282
Sau3AI	GATC	3 cut(s)	15, 131, 267
Sau96I	GGNCC	4 cut(s)	175, 249, 378, 430
SchI	GAGTC	3 cut(s)	353, 403, 611
ScrFI	CCNGG	4 cut(s)	113, 260, 486, 572
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	6 cut(s)	251, 290, 306, 526, 549, 573
SinI	GGWCC	3 cut(s)	249, 378, 430
Sse9I	AATT	6 cut(s)	211, 295, 398, 457, 509, 616
SspMI	CTAG	2 cut(s)	404, 622
StyD4I	CCNGG	4 cut(s)	111, 258, 484, 570
TaaI	ACNGT	2 cut(s)	382, 578
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	168, 323
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	6 cut(s)	211, 295, 398, 457, 509, 616
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	3 cut(s)	158, 176, 284
TfiI	GAWTC	2 cut(s)	120, 419
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	406
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	510, 515
TspGWI	ACGGA	2 cut(s)	345, 482
VpaK11BI	GGWCC	3 cut(s)	249, 378, 430
XapI	RAATTY	3 cut(s)	295, 398, 616
XspI	CTAG	2 cut(s)	404, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.