Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0015911

Physical Location & Seq

Genomic Coordinates Forward (+)

4011610 .. 4018719

Gene Structure 7110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0052500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

ATGCAGCGCCAGAAATCGATCCTCTCCTTCTTCCGGAAACCCTCGCCGGACAAAAGCACCTCCACCGCCGGAGACGACGGCCGTGGAGTTAATCAGTTCGCGGCGAAGGAGCAGGAGCAGAAGCCCGTCGGATCCAATCAGCCTCCGGATCTCGAAGTTCGAGGAACCGACACTCCGCCGGAGAAGGTGCCGCGTCAGATTCTGCCGGCGAATTCCGCGAGCCTGAAAGACTCTTCGCCTTTCTCTAGTATTATGCATAAGTTTATGAAGGTCGATGACACACATAAGGCTTCTCAGAGCCACCGGAATGAACCAAATGGTGGTTCCTCTAATGATTGTACGGTATCTGGTAAACTCAATGATACCAATTCCAGTAAGAAAATTAATCGAGGTGCTGTGATGCATATCGAAAGTGATGAGGACATTGCTGGACCAGAAACACCGGGGACACAGCGTCTAGTTCCACGTATGAAGCGAATTCAAGAGGAGATTTCTAAGTTTGGGGATAAATTTGGGAGTTCTTTGCCAGATTCTAGCAAAAGATTGAAAGTTCTTGAGGAGCCAACAGTCTTAGACAAGAGCCATGGGGAAGCATCTGATATGGCTAGCAAGTTTGAGTGGCTTGACCCATCCCGAATCAGAGATGCAAATCGCAGAAGGCCTGGTGATCCTCTCTATGACAAAACATCACTTTATATACCGCCTGATGCTCTGAAGAAAATGTCGGCATCACAAAGACAATACTGGGATGTCAAGTGTCAGTATATGGATGTTGTGATTTTCTTTAAAGTGGGAAAGTTTTATGAGCTTTATGAACTGGATGCTGAAATTGGCCACAAGGAGCTTGATTGGAAAATGACCTTGAGTGGTGTTGGGAAATGTCGTCAGGTTGGCATCTCTGAAAGTGGGATTGACGATGCTGTTCAAAAGTTGGTTGTCCGTGGGTATAAAGTTGGACGGATAGAGCAGCTGGAAACTTCTGATCAAGTAAAAGCCAGAGGTGCCAAAGCTGTAATTCCAAGAAAATTGGTTCAGGTAGTCACACCATCAACCACAACTGATGGAAATATTGGGCCTGATGCTGTTCATCTTCTTGCAATAAAAGAGGGGAACTCTGGGGTCGACAATGGTTCAGTTGTATACGGGTTTGCTTTTGTTGATTGTTCTGCTTTAAAGTTCTGGATTGGTGCTATCAGTGATGATGCTTCGTGTGCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAAGAAGTTGTATATGAAAACAGAGGGCTCTCAAAAGAAGCTCAAAAAGCACTGAAAAAGTACTCAACAGGTTCTGCACTGCAATTGACTCCAGTGCAGCCAGTCAATGATTTTATGGATGCTTCTGAAGTTAGTAAATTGATTCAGTTGAAAGGATACTTCAAAGGGTCTTCGAATTCATGGAATCATGGACCTGATGGTGTGGTACACCATGATATAACTTTACCTGCTCTGGGTACACTTATTGACCACCTATCCAGGTTGATGTTAGATGACGTTTTACGCAATGGAGATATATTACCTTACCAAGTTTATAAGGGTTGCCTCAAAATGGATGGACAGACGCTGATAAATCTTGAGATTTTCAGTAATACTGCTGATGGTGGTCCATCAGGTACGCTGTATGCATATCTCGATAACTGTGTGACTGCATCTGGTAAGCGGCTTTTGAGGAAGTGGATCTGCCATCCCTTGAAGTCTGTTGAAGCTATTAATAACAGGCTTAATGTGGTTGAAGATCTACTGGCACATCCAGAAATGGTGCCACTTATTGCTCAGTATCTCCGCAAGCTGCCAGACTTAGAGAGGTTGTTTGGACGGGTTAGAGCAACTGTTCAGTCGTCAGCTTCCCTCCTATTGCCATTATTTGGCAAGAAATTACTAAAACAGAGAGTGAAAGTGTTCGGGACTCTTGTGAAAGGCCTCAGATTTGGACTGGATTTGTTAACGGTATTACAAAATGAAGGGCATATAATTGAGCTGTTATTAAAACTATTTAAAGTTCCACGTCTAAGTGGCAGTGATGGGCTTGATCAATATCTTAAGCAATTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTACCAGAATCATGATGCAACCGATTCAGATGCTGAAATACTCTCGATTCTAGTCGAGCTATTTATGGAGAAAGCAACTGAGTGGACTGATGTCATACATGCCATCAACTGTATTGATGTGCTAAGATCTTTTGTAGTTACCGCAAGCTTCCCAAGTGGAGCTATGTCCAGACCTGTTCTTTTGCCTCAATCTCAAAATACAACCTTGAATGGAGAAAATGGAAGTCCTACACTTAATATTAAAGGACTATGGCATCCATTTGCTCTTGGTGAAAATGGTGGACAGCCTGTGCCAAATGATGTAGTTCTAGGTGAAAATACTGATGGCTATCATCCACGCACTTTACTATTAACTGGACCAAATATGGGTGGGAAATCAACTCTTCTTCGTTCCACATGTCTGGCTGTTATACTTGCCCAGCTGGGCTGTTACGTGCCTTGTGAGATGTGTGTTCTCTCACTTGTGGACATCATCTTTACACGGCTTGGTGCCACTGATCGTATCATGACTGGCGAGAGTACCTTCTTAGTGGAATGCACAGAAACGGCATCAGTTCTTCAACATGCCACTCCAGATTCTTTGGTTATTCTTGATGAATTGGGTCGTGGAACAAGCACGTTTGATGGATATGCCATTGCATATGCTGTATTTCGTCATCTTGTTGAAAAGATCAACTGCAGACTGTTATTCGCCACACACTATCACCCGCTTACGAGAGAATTTGCTTCTCATCCGCATGTTTCATTGCAACACATGGCATGTGCTTTTAGGTCGAAATCTAAATCCCCTTCAAAAAGTGACCAAGAGCTGGTATTTCTCTATCGCCTTACCTCAGGGGCATGCCCAGAGAGTTATGGATTGCAAGTAGCAATGATGGCTGGGATCCCTGAGAATGTGGTTGAAGCTGCTTCTAAGGCTGGTCAAGTAATGAAGAAATCTGTTGGAGAAAGCTTCAGGTCCAGTGAACAGAGATCGGAATTCTCAACTCTCCATGAGGAGTGGCTGAAGACACTGTTAACAGTTTCACAAACCGGTAATTATAACGACGAAGATTCATTGGACGTATTGTTTTGCTTGCAGCAGGAACTAAAGTGCTCATATAGATTGGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032502 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

1074

Amino Acids

118.31

Weight (kDa)

6.46

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MutS_I	PF01624	244 - 355	2.6e-29	MutS domain I
MutS_II	PF05188	364 - 509	2.3e-11	MutS domain II
MutS_III	PF05192	530 - 747	1.4e-32	MutS domain III
MutS_V	PF00488	819 - 1011	4.6e-74	MutS domain V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19210
fragaria_vesca	FvH4_1g09180
malus_domestica	MD02G1096500.v1.1 MD15G1221100.v1.1
prunus_persica	Prupe.7G194400_v2.0.a1
pyrus_communis	pycom02g07650 pycom15g19580
rosa_chinensis	RchiOBHm_Chr2g0095581
rosa_laevigata	RLG00000016581
rosa_multiflora	Rmu_sc0004719.1_g000008
rosa_rugosa	Rorug02G0052500
rosa_samantha	Rh2BG101800 Rh2CG104000 Rh2DG101400
rosa_wichuraiana	Rw2G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1563, 3150
Acc36I	ACCTGC	1 cut(s)	1483
AccB1I	GGYRCC	4 cut(s)	187, 1001, 1789, 2597
AccB7I	CCANNNNNTGG	3 cut(s)	320, 1895, 2917
AccI	GTMKAC	2 cut(s)	1122, 1140
AccII	CGCG	3 cut(s)	101, 193, 218
AccIII	TCCGGA	2 cut(s)	33, 145
AclWI	GGATC	8 cut(s)	13, 126, 139, 156, 662, 1715, 2986, 2999
AcoI	YGGCCR	3 cut(s)	79, 832, 3216
AcsI	RAATTY	6 cut(s)	211, 477, 509, 1423, 2828, 3086
AcuI	CTGAAG	4 cut(s)	734, 1395, 3046, 3134
AfaI	GTAC	6 cut(s)	340, 1310, 1455, 1486, 1645, 2629
AfiI	CCNNNNNNNGG	7 cut(s)	33, 320, 1481, 1579, 1895, 2474, 2917
AflII	CTTAAG	1 cut(s)	2069
AflIII	ACRYGT	1 cut(s)	2504
AgeI	ACCGGT	1 cut(s)	3140
AhdI	GACNNNNNGTC	1 cut(s)	453
AjiI	CACGTC	1 cut(s)	2036
AjnI	CCWGG	2 cut(s)	661, 1505
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AloI	GAACNNNNNNTCC	2 cut(s)	157, 189
Alw21I	GWGCWC	1 cut(s)	3206
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	8 cut(s)	13, 126, 139, 156, 662, 1715, 2986, 2999
AlwNI	CAGNNNCTG	4 cut(s)	202, 1322, 1594, 2141
Aor13HI	TCCGGA	2 cut(s)	33, 145
AoxI	GGCC	6 cut(s)	79, 659, 832, 1073, 1948, 3216
ApeKI	GCWGC	8 cut(s)	4, 967, 1214, 1345, 1819, 2084, 3014, 3187
ApoI	RAATTY	6 cut(s)	211, 477, 509, 1423, 2828, 3086
AseI	ATTAAT	2 cut(s)	384, 1740
AsiGI	ACCGGT	1 cut(s)	3140
Asp700I	GAANNNNTTC	1 cut(s)	1928
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	6 cut(s)	431, 1073, 1439, 1634, 2465, 3066
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	5 cut(s)	677, 1236, 2390, 2432, 2804
AsuII	TTCGAA	1 cut(s)	1421
AsuNHI	GCTAGC	1 cut(s)	605
AvaII	GGWCC	5 cut(s)	431, 1439, 1634, 2465, 3066
AxyI	CCTNAGG	1 cut(s)	2941
BalI	TGGCCA	2 cut(s)	834, 3218
BamHI	GGATCC	2 cut(s)	131, 2991
BanI	GGYRCC	4 cut(s)	187, 1001, 1789, 2597
BanII	GRGCYC	1 cut(s)	1278
BbsI	GAAGAC	2 cut(s)	1410, 3122
Bbv12I	GWGCWC	1 cut(s)	3206
BbvI	GCAGC	8 cut(s)	16, 979, 1201, 1357, 1806, 2096, 3001, 3199
BceAI	ACGGC	4 cut(s)	66, 94, 2606, 2670
BcgI	CGANNNNNNTGC	2 cut(s)	2120, 2154
BciT130I	CCWGG	2 cut(s)	663, 1507
BciVI	GTATCC	1 cut(s)	1397
BclI	TGATCA	2 cut(s)	982, 2059
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	6 cut(s)	246, 458, 534, 606, 2159, 2417
BfmI	CTRYAG	2 cut(s)	2088, 2785
BfoI	RGCGCY	1 cut(s)	10
BfrI	CTTAAG	1 cut(s)	2069
BfuAI	ACCTGC	1 cut(s)	1483
BfuI	GTATCC	1 cut(s)	1397
BglII	AGATCT	2 cut(s)	1765, 2234
BmcAI	AGTACT	1 cut(s)	1310
Bme1390I	CCNGG	3 cut(s)	444, 663, 1507
Bme18I	GGWCC	5 cut(s)	431, 1439, 1634, 2465, 3066
BmeRI	GACNNNNNGTC	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	2036
BmgT120I	GGNCC	6 cut(s)	431, 1073, 1439, 1634, 2465, 3066
BmiI	GGNNCC	9 cut(s)	133, 166, 189, 325, 561, 1003, 1791, 2599, 2993
BmrFI	CCNGG	3 cut(s)	444, 663, 1507
BmrI	ACTGGG	1 cut(s)	754
BmtI	GCTAGC	1 cut(s)	609
BmuI	ACTGGG	1 cut(s)	754
BoxI	GACNNNNGTC	1 cut(s)	2198
BpiI	GAAGAC	2 cut(s)	1410, 3122
BplI	GAGNNNNNCTC	2 cut(s)	1097, 1129
BpmI	CTGGAG	2 cut(s)	1323, 2664
Bpu14I	TTCGAA	1 cut(s)	1421
BpuEI	CTTGAG	3 cut(s)	575, 883, 1625
BpuMI	CCSGG	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	17
BsaAI	YACGTR	2 cut(s)	467, 2542
BsaBI	GATNNNNATC	4 cut(s)	404, 648, 2064, 2436
BsaJI	CCNNGG	4 cut(s)	82, 443, 583, 940
BsaWI	WCCGGW	4 cut(s)	33, 145, 303, 3140
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 320, 1481, 1579, 1895, 2474, 2917
Bse118I	RCCGGY	2 cut(s)	205, 3140
Bse21I	CCTNAGG	1 cut(s)	2941
Bse3DI	GCAATG	5 cut(s)	423, 1540, 2742, 2852, 2985
Bse8I	GATNNNNATC	4 cut(s)	404, 648, 2064, 2436
BseAI	TCCGGA	2 cut(s)	33, 145
BseBI	CCWGG	2 cut(s)	663, 1507
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	4 cut(s)	82, 443, 583, 940
BseJI	GATNNNNATC	4 cut(s)	404, 648, 2064, 2436
BseLI	CCNNNNNNNGG	7 cut(s)	33, 320, 1481, 1579, 1895, 2474, 2917
BseMI	GCAATG	5 cut(s)	423, 1540, 2742, 2852, 2985
BseMII	CTCAG	6 cut(s)	308, 1817, 1966, 2178, 2955, 2988
BseRI	GAGGAG	3 cut(s)	500, 572, 3119
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	8 cut(s)	16, 979, 1201, 1357, 1806, 2096, 3001, 3199
BseYI	CCCAGC	3 cut(s)	2526, 2530, 2987
BsgI	GTGCAG	2 cut(s)	1308, 1364
Bsh1236I	CGCG	3 cut(s)	101, 193, 218
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	6 cut(s)	81, 661, 834, 1075, 1950, 3218
BshNI	GGYRCC	4 cut(s)	187, 1001, 1789, 2597
BshTI	ACCGGT	1 cut(s)	3140
BshVI	ATCGAT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	3206
BsiSI	CCGG	9 cut(s)	34, 47, 69, 146, 179, 206, 304, 443, 3141
BslFI	GGGAC	2 cut(s)	460, 1948
BslI	CCNNNNNNNGG	7 cut(s)	33, 320, 1481, 1579, 1895, 2474, 2917
BsmAI	GTCTC	1 cut(s)	66
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	460, 1948
BsmI	GAATGC	1 cut(s)	2648
BsnI	GGCC	6 cut(s)	81, 661, 834, 1075, 1950, 3218
Bsp119I	TTCGAA	1 cut(s)	1421
Bsp1286I	GDGCHC	2 cut(s)	1278, 3206
Bsp13I	TCCGGA	2 cut(s)	33, 145
Bsp19I	CCATGG	1 cut(s)	583
BspANI	GGCC	6 cut(s)	81, 661, 834, 1075, 1950, 3218
BspCNI	CTCAG	6 cut(s)	307, 1816, 1965, 2179, 2954, 2989
BspDI	ATCGAT	1 cut(s)	17
BspEI	TCCGGA	2 cut(s)	33, 145
BspFNI	CGCG	3 cut(s)	101, 193, 218
BspHI	TCATGA	2 cut(s)	2119, 2613
BspLI	GGNNCC	9 cut(s)	133, 166, 189, 325, 561, 1003, 1791, 2599, 2993
BspMAI	CTGCAG	1 cut(s)	2789
BspMI	ACCTGC	1 cut(s)	1483
BspOI	GCTAGC	1 cut(s)	609
BspPI	GGATC	8 cut(s)	13, 126, 139, 156, 662, 1715, 2986, 2999
BspT104I	TTCGAA	1 cut(s)	1421
BspT107I	GGYRCC	4 cut(s)	187, 1001, 1789, 2597
BspTI	CTTAAG	1 cut(s)	2069
BsrDI	GCAATG	5 cut(s)	423, 1540, 2742, 2852, 2985
BsrFI	RCCGGY	2 cut(s)	205, 3140
BssAI	RCCGGY	2 cut(s)	205, 3140
BssECI	CCNNGG	4 cut(s)	82, 443, 583, 940
BssNAI	GTATAC	1 cut(s)	1141
BssT1I	CCWWGG	1 cut(s)	583
Bst1107I	GTATAC	1 cut(s)	1141
Bst2UI	CCWGG	2 cut(s)	663, 1507
Bst4CI	ACNGT	9 cut(s)	343, 568, 1670, 1861, 1978, 2219, 2793, 3123, 3130
Bst6I	CTCTTC	2 cut(s)	238, 2496
BstAFI	CTTAAG	1 cut(s)	2069
BstBAI	YACGTR	2 cut(s)	467, 2542
BstBI	TTCGAA	1 cut(s)	1421
BstC8I	GCNNGC	7 cut(s)	207, 220, 607, 1817, 2254, 2950, 3185
BstDSI	CCRYGG	3 cut(s)	82, 583, 940
BstFNI	CGCG	3 cut(s)	101, 193, 218
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	66
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	215, 1001, 1211, 1223, 1295, 2984, 3023
BstNI	CCWGG	2 cut(s)	663, 1507
BstNSI	RCATGY	6 cut(s)	2210, 2508, 2675, 2849, 2871, 2952
BstPAI	GACNNNNGTC	1 cut(s)	2198
BstSCI	CCNGG	3 cut(s)	442, 661, 1505
BstSFI	CTRYAG	2 cut(s)	2088, 2785
BstUI	CGCG	3 cut(s)	101, 193, 218
BstV1I	GCAGC	8 cut(s)	16, 979, 1201, 1357, 1806, 2096, 3001, 3199
BstV2I	GAAGAC	2 cut(s)	1410, 3122
BstX2I	RGATCY	6 cut(s)	131, 148, 1707, 1765, 2234, 2991
BstXI	CCANNNNNNTGG	1 cut(s)	2509
BstYI	RGATCY	6 cut(s)	131, 148, 1707, 1765, 2234, 2991
BstZ17I	GTATAC	1 cut(s)	1141
BstZI	CGGCCG	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	17
Bsu36I	CCTNAGG	1 cut(s)	2941
BsuI	GTATCC	1 cut(s)	1397
BsuRI	GGCC	6 cut(s)	81, 661, 834, 1075, 1950, 3218
BsuTUI	ATCGAT	1 cut(s)	17
BtgI	CCRYGG	3 cut(s)	82, 583, 940
BtrI	CACGTC	1 cut(s)	2036
BtsI	GCAGTG	2 cut(s)	1325, 2053
BtsIMutI	CAGTG	8 cut(s)	1201, 1298, 1325, 1347, 2053, 2601, 3076, 3119
BveI	ACCTGC	1 cut(s)	1483
Cac8I	GCNNGC	7 cut(s)	207, 220, 607, 1817, 2254, 2950, 3185
CaiI	CAGNNNCTG	4 cut(s)	202, 1322, 1594, 2141
CciI	TCATGA	2 cut(s)	2119, 2613
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	205, 3140
Cfr13I	GGNCC	6 cut(s)	431, 1073, 1439, 1634, 2465, 3066
ClaI	ATCGAT	1 cut(s)	17
CseI	GACGC	3 cut(s)	182, 443, 1600
Csp6I	GTAC	6 cut(s)	339, 1309, 1454, 1485, 1644, 2628
CspAI	ACCGGT	1 cut(s)	3140
CviQI	GTAC	6 cut(s)	339, 1309, 1454, 1485, 1644, 2628
DraI	TTTAAA	3 cut(s)	787, 1173, 2026
DriI	GACNNNNNGTC	1 cut(s)	453
EaeI	YGGCCR	3 cut(s)	79, 832, 3216
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	238, 2496
Eam1105I	GACNNNNNGTC	1 cut(s)	453
EarI	CTCTTC	2 cut(s)	238, 2496
EciI	GGCGGA	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	583
Eco147I	AGGCCT	2 cut(s)	661, 1950
Eco24I	GRGCYC	1 cut(s)	1278
Eco47I	GGWCC	5 cut(s)	431, 1439, 1634, 2465, 3066
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	4 cut(s)	734, 1395, 3046, 3134
Eco81I	CCTNAGG	1 cut(s)	2941
EcoRI	GAATTC	4 cut(s)	211, 477, 1423, 3086
EcoRII	CCWGG	2 cut(s)	661, 1505
EcoT14I	CCWWGG	1 cut(s)	583
EcoT22I	ATGCAT	3 cut(s)	258, 405, 1657
EcoT38I	GRGCYC	1 cut(s)	1278
ErhI	CCWWGG	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	66
FaqI	GGGAC	2 cut(s)	460, 1948
FauI	CCCGC	1 cut(s)	2823
FauNDI	CATATG	1 cut(s)	2749
FbaI	TGATCA	2 cut(s)	982, 2059
FblI	GTMKAC	2 cut(s)	1122, 1140
FriOI	GRGCYC	1 cut(s)	1278
FspBI	CTAG	6 cut(s)	246, 458, 534, 606, 2159, 2417
GlaI	GCGC	1 cut(s)	8
GsaI	CCCAGC	3 cut(s)	2530, 2534, 2991
GsuI	CTGGAG	2 cut(s)	1323, 2664
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	6 cut(s)	81, 661, 834, 1075, 1950, 3218
HapII	CCGG	9 cut(s)	34, 47, 69, 146, 179, 206, 304, 443, 3141
HgaI	GACGC	3 cut(s)	182, 443, 1600
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	3 cut(s)	1123, 1974, 3126
HindII	GTYRAC	3 cut(s)	1123, 1974, 3126
HindIII	AAGCTT	2 cut(s)	2254, 3058
HpaI	GTTAAC	2 cut(s)	1974, 3126
HpaII	CCGG	9 cut(s)	34, 47, 69, 146, 179, 206, 304, 443, 3141
HphI	GGTGA	5 cut(s)	677, 1236, 2390, 2432, 2804
Hpy99I	CGWCG	3 cut(s)	80, 131, 3158
HpyAV	CCTTC	8 cut(s)	37, 100, 178, 262, 651, 1985, 2641, 2907
HpyCH4III	ACNGT	9 cut(s)	343, 568, 1670, 1861, 1978, 2219, 2793, 3123, 3130
HpyCH4IV	ACGT	6 cut(s)	466, 1524, 2035, 2541, 2726, 3171
HpyF10VI	GCNNNNNNNGC	7 cut(s)	215, 1001, 1211, 1223, 1295, 2984, 3023
HpySE526I	ACGT	6 cut(s)	466, 1524, 2035, 2541, 2726, 3171
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	2 cut(s)	33, 145
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Ksp22I	TGATCA	2 cut(s)	982, 2059
KspAI	GTTAAC	2 cut(s)	1974, 3126
LmnI	GCTCC	5 cut(s)	109, 115, 559, 841, 2267
Lsp1109I	GCAGC	8 cut(s)	16, 979, 1201, 1357, 1806, 2096, 3001, 3199
MaeI	CTAG	6 cut(s)	246, 458, 534, 606, 2159, 2417
MaeII	ACGT	6 cut(s)	466, 1524, 2035, 2541, 2726, 3171
MaeIII	GTNAC	7 cut(s)	1039, 1242, 1672, 2096, 2245, 2537, 2906
MfeI	CAATTG	1 cut(s)	1331
MflI	RGATCY	6 cut(s)	131, 148, 1707, 1765, 2234, 2991
MhlI	GDGCHC	2 cut(s)	1278, 3206
MlsI	TGGCCA	2 cut(s)	834, 3218
MluNI	TGGCCA	2 cut(s)	834, 3218
MlyI	GAGTC	3 cut(s)	224, 1330, 1930
MmeI	TCCRAC	3 cut(s)	109, 934, 3031
Mox20I	TGGCCA	2 cut(s)	834, 3218
Mph1103I	ATGCAT	3 cut(s)	258, 405, 1657
MroI	TCCGGA	2 cut(s)	33, 145
MroNI	GCCGGC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	1928
MscI	TGGCCA	2 cut(s)	834, 3218
MslI	CAYNNNNRTG	2 cut(s)	306, 2844
Msp20I	TGGCCA	2 cut(s)	834, 3218
MspA1I	CMGCKG	3 cut(s)	970, 2087, 2530
MspCI	CTTAAG	1 cut(s)	2069
MspI	CCGG	9 cut(s)	34, 47, 69, 146, 179, 206, 304, 443, 3141
MspR9I	CCNGG	3 cut(s)	444, 663, 1507
MunI	CAATTG	1 cut(s)	1331
Mva1269I	GAATGC	1 cut(s)	2648
MvaI	CCWGG	2 cut(s)	663, 1507
MvnI	CGCG	3 cut(s)	101, 193, 218
MwoI	GCNNNNNNNGC	7 cut(s)	215, 1001, 1211, 1223, 1295, 2984, 3023
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	2749
NgoMIV	GCCGGC	1 cut(s)	205
NheI	GCTAGC	1 cut(s)	605
NlaIV	GGNNCC	9 cut(s)	133, 166, 189, 325, 561, 1003, 1791, 2599, 2993
NmuCI	GTSAC	5 cut(s)	1039, 1242, 1672, 2096, 2906
NsiI	ATGCAT	3 cut(s)	258, 405, 1657
NspI	RCATGY	6 cut(s)	2210, 2508, 2675, 2849, 2871, 2952
NspV	TTCGAA	1 cut(s)	1421
PaeI	GCATGC	1 cut(s)	2952
PagI	TCATGA	2 cut(s)	2119, 2613
PceI	AGGCCT	2 cut(s)	661, 1950
PciI	ACATGT	1 cut(s)	2504
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PctI	GAATGC	1 cut(s)	2648
PdiI	GCCGGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	1928
PflMI	CCANNNNNTGG	3 cut(s)	320, 1895, 2917
PinAI	ACCGGT	1 cut(s)	3140
PleI	GAGTC	3 cut(s)	224, 1330, 1930
PpsI	GAGTC	3 cut(s)	224, 1330, 1930
Ppu21I	YACGTR	2 cut(s)	467, 2542
PscI	ACATGT	1 cut(s)	2504
PshAI	GACNNNNGTC	1 cut(s)	2198
PshBI	ATTAAT	2 cut(s)	384, 1740
PsiI	TTATAA	2 cut(s)	1563, 3150
Psp6I	CCWGG	2 cut(s)	661, 1505
PspFI	CCCAGC	3 cut(s)	2526, 2530, 2987
PspGI	CCWGG	2 cut(s)	661, 1505
PspN4I	GGNNCC	9 cut(s)	133, 166, 189, 325, 561, 1003, 1791, 2599, 2993
PspPI	GGNCC	6 cut(s)	431, 1073, 1439, 1634, 2465, 3066
PstI	CTGCAG	1 cut(s)	2789
PstNI	CAGNNNCTG	4 cut(s)	202, 1322, 1594, 2141
PsuI	RGATCY	6 cut(s)	131, 148, 1707, 1765, 2234, 2991
PvuII	CAGCTG	3 cut(s)	970, 2087, 2530
RsaI	GTAC	6 cut(s)	340, 1310, 1455, 1486, 1645, 2629
RsaNI	GTAC	6 cut(s)	339, 1309, 1454, 1485, 1644, 2628
RseI	CAYNNNNRTG	2 cut(s)	306, 2844
SalI	GTCGAC	1 cut(s)	1121
Sau96I	GGNCC	6 cut(s)	431, 1073, 1439, 1634, 2465, 3066
ScaI	AGTACT	1 cut(s)	1310
SchI	GAGTC	3 cut(s)	224, 1330, 1930
ScrFI	CCNGG	3 cut(s)	444, 663, 1507
SduI	GDGCHC	2 cut(s)	1278, 3206
SfcI	CTRYAG	2 cut(s)	2088, 2785
SfuI	TTCGAA	1 cut(s)	1421
SinI	GGWCC	5 cut(s)	431, 1439, 1634, 2465, 3066
SmiMI	CAYNNNNRTG	2 cut(s)	306, 2844
SmlI	CTYRAG	4 cut(s)	554, 862, 1604, 2069
SmoI	CTYRAG	4 cut(s)	554, 862, 1604, 2069
SphI	GCATGC	1 cut(s)	2952
SseBI	AGGCCT	2 cut(s)	661, 1950
SspI	AATATT	2 cut(s)	1069, 2347
SspMI	CTAG	6 cut(s)	246, 458, 534, 606, 2159, 2417
StuI	AGGCCT	2 cut(s)	661, 1950
StyD4I	CCNGG	3 cut(s)	442, 661, 1505
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	9 cut(s)	343, 568, 1670, 1861, 1978, 2219, 2793, 3123, 3130
TaiI	ACGT	6 cut(s)	469, 1527, 2038, 2544, 2729, 3174
TatI	WGTACW	1 cut(s)	1308
TauI	GCSGC	3 cut(s)	104, 193, 1693
TscAI	CASTG	8 cut(s)	1201, 1305, 1332, 1347, 2053, 2608, 3076, 3126
TseFI	GTSAC	5 cut(s)	1039, 1242, 1672, 2096, 2906
TseI	GCWGC	8 cut(s)	4, 967, 1214, 1345, 1819, 2084, 3014, 3187
Tsp45I	GTSAC	5 cut(s)	1039, 1242, 1672, 2096, 2906
TspGWI	ACGGA	2 cut(s)	929, 973
TspRI	CASTG	8 cut(s)	1201, 1305, 1332, 1347, 2053, 2608, 3076, 3126
Van91I	CCANNNNNTGG	3 cut(s)	320, 1895, 2917
Vha464I	CTTAAG	1 cut(s)	2069
VpaK11BI	GGWCC	5 cut(s)	431, 1439, 1634, 2465, 3066
VspI	ATTAAT	2 cut(s)	384, 1740
XapI	RAATTY	6 cut(s)	211, 477, 509, 1423, 2828, 3086
XceI	RCATGY	6 cut(s)	2210, 2508, 2675, 2849, 2871, 2952
XmiI	GTMKAC	2 cut(s)	1122, 1140
XmnI	GAANNNNTTC	1 cut(s)	1928
XspI	CTAG	6 cut(s)	246, 458, 534, 606, 2159, 2417
ZrmI	AGTACT	1 cut(s)	1310
Zsp2I	ATGCAT	3 cut(s)	258, 405, 1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.