AT1G19320

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015074
Physical Location & Seq
Forward (+)
6679281 .. 6680252
972 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19320.1

Sequence Viewer

Length: 744 bp
ATGGCGATTTTCTCCACATCACATCTTCTCTTCATCTCCTTCATCATAGCCACATGTACAATTTCTGTCTCCGGTACAACCTTCACCTTAACAAACCATTGCGGCTCCACAATCTGGCCTGGAATCCTCACCGCAAACGGCGCACAACTCGGCGACGGCGGATTTGCCTTAGCTTCAGGATCTTCCGTAACCTTCACCGTTTCTCCAGGTTGGTCCGGTCGATTTTGGGCTCGAACGTATTGTAACTTCGACGCCTCAGGCTCAGGTAAATGCGGTACCGGGGACTGCGGCAGCAAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCCGAATTCACAATCGGCTCCTCCGGAAAGAAAAACGCCGTGCAAGATTTTTACGACGTGAGCCTCGTAGATGGTTATAACGTTCAGATGAAAATCACACCGCAAGGTGGCTCAGGGGATTGTAAAACCGCGGGATGCGTTTCGGACGTGAACGCGATTTGTCCAAAAGAGCTACAAGTTACGGGCCCATCGGGTGTTGCAGCGTGTAAGAGTGCTTGTGAGGCTTTTAACAAGCCGGAGTATTGTTGCACCGGCGCGTATAGTACACCGGCGACTTGTCCGCCCACGAATTACTCGAAGATATTTAAACAAGCTTGTCCGAGTGCGTATAGCTATGCATACGATGATGCTTCCAGTACTTTTACTTGTACTAATGCTAATTATGAGATCAGTTTCTGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0010033 GO:0042221 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

247

Amino Acids

25.43

Weight (kDa)

6.06

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 247 8.7e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca FvH4_2g40300
malus_domestica MD08G1036400.v1.1
prunus_persica Prupe.1G383700_v2.0.a1
pyrus_communis pycom08g02910
rosa_chinensis RchiOBHm_Chr6g0300441
rosa_laevigata RLG00000011337
rosa_multiflora Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii Rroxscaffold_7G00167780
rosa_rugosa Rorug06G0296100
rosa_samantha Rh6DG409100
rosa_wichuraiana Rw6G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 114
AccII CGCG 3 cut(s) 470, 494, 596
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 9 cut(s) 102, 132, 159, 273, 288, 440, 468, 470, 620
AclI AACGTT 1 cut(s) 420
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 6 cut(s) 58, 76, 277, 604, 697, 709
AfiI CCNNNNNNNGG 2 cut(s) 114, 446
AflIII ACRYGT 1 cut(s) 53
AjiI CACGTC 2 cut(s) 397, 487
AjnI CCWGG 2 cut(s) 118, 205
AluBI AGCT 5 cut(s) 173, 323, 511, 653, 672
AluI AGCT 5 cut(s) 173, 323, 511, 653, 672
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 187
AlwNI CAGNNNCTG 1 cut(s) 735
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 2 cut(s) 116, 523
ApaI GGGCCC 1 cut(s) 527
ApeKI GCWGC 2 cut(s) 291, 539
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 4 cut(s) 143, 308, 314, 596
AspS9I GGNCC 3 cut(s) 213, 523, 524
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 76, 121, 187
AvaII GGWCC 1 cut(s) 213
AxyI CCTNAGG 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 527
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 3 cut(s) 232, 325, 527
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 303, 551
BccI CCATC 2 cut(s) 404, 535
BceAI ACGGC 3 cut(s) 154, 172, 362
BciT130I CCWGG 2 cut(s) 120, 207
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 4 cut(s) 103, 289, 292, 540
BlsI GCNGC 4 cut(s) 104, 290, 293, 541
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 3 cut(s) 120, 207, 280
Bme18I GGWCC 1 cut(s) 213
BmgBI CACGTC 2 cut(s) 397, 487
BmgT120I GGNCC 3 cut(s) 213, 523, 524
BmiI GGNNCC 4 cut(s) 106, 277, 358, 525
BmrFI CCNGG 3 cut(s) 120, 207, 280
BmsI GCATC 2 cut(s) 464, 676
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 3 cut(s) 169, 262, 451
BpuMI CCSGG 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 279, 468
BsaWI WCCGGW 3 cut(s) 71, 215, 362
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 446
Bse118I RCCGGY 3 cut(s) 308, 590, 607
Bse1I ACTGG 1 cut(s) 693
Bse21I CCTNAGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 2 cut(s) 120, 207
BseDI CCNNGG 2 cut(s) 279, 468
BseGI GGATG 1 cut(s) 479
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 2 cut(s) 114, 446
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 270, 276, 465
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 2 cut(s) 333, 349
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 2 cut(s) 303, 551
Bsh1236I CGCG 3 cut(s) 470, 494, 596
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 2 cut(s) 118, 525
BshNI GGYRCC 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 8 cut(s) 72, 216, 279, 309, 363, 575, 591, 608
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 114, 446
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 118, 525
Bsp120I GGGCCC 1 cut(s) 523
Bsp1286I GDGCHC 3 cut(s) 232, 325, 527
Bsp13I TCCGGA 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 56
Bsp143I GATC 2 cut(s) 179, 726
BspACI CCGC 9 cut(s) 102, 132, 159, 273, 288, 440, 468, 470, 620
BspANI GGCC 2 cut(s) 118, 525
BspCNI CTCAG 3 cut(s) 269, 275, 464
BspEI TCCGGA 1 cut(s) 362
BspFNI CGCG 3 cut(s) 470, 494, 596
BspLI GGNNCC 4 cut(s) 106, 277, 358, 525
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 97
BsrFI RCCGGY 3 cut(s) 308, 590, 607
BsrGI TGTACA 1 cut(s) 56
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 3 cut(s) 308, 590, 607
BssECI CCNNGG 2 cut(s) 279, 468
BssMI GATC 2 cut(s) 179, 726
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 120, 207
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 5 cut(s) 169, 256, 262, 451, 741
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 479
BstFNI CGCG 3 cut(s) 470, 494, 596
BstHHI GCGC 4 cut(s) 143, 308, 314, 596
BstKTI GATC 2 cut(s) 182, 729
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 2 cut(s) 179, 726
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 5 cut(s) 140, 320, 329, 338, 560
BstNI CCWGG 2 cut(s) 120, 207
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 118, 205, 278
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 3 cut(s) 470, 494, 596
BstV1I GCAGC 2 cut(s) 303, 551
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu36I CCTNAGG 1 cut(s) 256
BsuRI GGCC 2 cut(s) 118, 525
BtgI CCRYGG 1 cut(s) 468
BtrI CACGTC 2 cut(s) 397, 487
BtsCI GGATG 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 310
CaiI CAGNNNCTG 1 cut(s) 735
CfoI GCGC 4 cut(s) 143, 308, 314, 596
Cfr10I RCCGGY 3 cut(s) 308, 590, 607
Cfr13I GGNCC 3 cut(s) 213, 523, 524
Cfr42I CCGCGG 1 cut(s) 471
CseI GACGC 1 cut(s) 260
Csp6I GTAC 6 cut(s) 57, 75, 276, 603, 696, 708
CviAII CATG 1 cut(s) 54
CviQI GTAC 6 cut(s) 57, 75, 276, 603, 696, 708
DdeI CTNAG 5 cut(s) 169, 256, 262, 451, 741
DpnI GATC 2 cut(s) 181, 728
DpnII GATC 2 cut(s) 179, 726
DraI TTTAAA 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 2 cut(s) 174, 609
Ecl136II GAGCTC 1 cut(s) 323
Eco24I GRGCYC 3 cut(s) 232, 325, 527
Eco47I GGWCC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 118, 205
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 3 cut(s) 232, 325, 527
FaeI CATG 1 cut(s) 57
FaiI YATR 8 cut(s) 47, 55, 417, 600, 669, 675, 679, 723
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 103, 289, 292, 540
FokI GGATG 1 cut(s) 486
FriOI GRGCYC 3 cut(s) 232, 325, 527
Fsp4HI GCNGC 4 cut(s) 103, 289, 292, 540
GlaI GCGC 4 cut(s) 142, 307, 313, 595
GluI GCNGC 4 cut(s) 103, 289, 292, 540
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 2 cut(s) 118, 525
HapII CCGG 8 cut(s) 72, 216, 279, 309, 363, 575, 591, 608
HgaI GACGC 1 cut(s) 260
HhaI GCGC 4 cut(s) 143, 308, 314, 596
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 4 cut(s) 141, 306, 312, 594
HinP1I GCGC 4 cut(s) 141, 306, 312, 594
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 1 cut(s) 123
HpaII CCGG 8 cut(s) 72, 216, 279, 309, 363, 575, 591, 608
HphI GGTGA 3 cut(s) 76, 121, 187
Hpy166II GTNNAC 2 cut(s) 490, 605
Hpy188I TCNGA 3 cut(s) 426, 484, 660
Hpy188III TCNNGA 2 cut(s) 177, 363
Hpy8I GTNNAC 2 cut(s) 490, 605
Hpy99I CGWCG 3 cut(s) 158, 254, 398
HpyAV CCTTC 3 cut(s) 49, 91, 202
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 4 cut(s) 236, 396, 420, 486
HpyCH4V TGCA 4 cut(s) 382, 539, 588, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 320, 329, 338, 560
HpyF3I CTNAG 5 cut(s) 169, 256, 262, 451, 741
HpySE526I ACGT 4 cut(s) 236, 396, 420, 486
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 4 cut(s) 141, 306, 312, 594
Kpn2I TCCGGA 1 cut(s) 362
KpnI GGTACC 1 cut(s) 279
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
KspI CCGCGG 1 cut(s) 471
Kzo9I GATC 2 cut(s) 179, 726
LmnI GCTCC 4 cut(s) 110, 320, 328, 362
Lsp1109I GCAGC 2 cut(s) 303, 551
LweI GCATC 2 cut(s) 464, 676
MaeII ACGT 4 cut(s) 236, 396, 420, 486
MaeIII GTNAC 3 cut(s) 187, 242, 517
MalI GATC 2 cut(s) 181, 728
MboI GATC 2 cut(s) 179, 726
MboII GAAGA 4 cut(s) 17, 22, 174, 649
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 3 cut(s) 232, 325, 527
MluCI AATT 4 cut(s) 60, 344, 628, 718
MnlI CCTC 6 cut(s) 137, 265, 311, 370, 413, 553
Mph1103I ATGCAT 1 cut(s) 679
MreI CGCCGGCG 1 cut(s) 308
MroI TCCGGA 1 cut(s) 362
MroNI GCCGGC 1 cut(s) 308
MseI TTAA 4 cut(s) 89, 299, 567, 645
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 8 cut(s) 72, 216, 279, 309, 363, 575, 591, 608
MspR9I CCNGG 3 cut(s) 120, 207, 280
MvaI CCWGG 2 cut(s) 120, 207
MvnI CGCG 3 cut(s) 470, 494, 596
MwoI GCNNNNNNNGC 5 cut(s) 140, 320, 329, 338, 560
NaeI GCCGGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 179, 726
NgoMIV GCCGGC 1 cut(s) 308
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 4 cut(s) 106, 277, 358, 525
NmeAIII GCCGAG 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 1 cut(s) 57
PciI ACATGT 1 cut(s) 53
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 632
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 4 cut(s) 104, 290, 293, 541
PscI ACATGT 1 cut(s) 53
PsiI TTATAA 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 325
Psp1406I AACGTT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 118, 205
PspGI CCWGG 2 cut(s) 118, 205
PspN4I GGNNCC 4 cut(s) 106, 277, 358, 525
PspOMI GGGCCC 1 cut(s) 523
PspPI GGNCC 3 cut(s) 213, 523, 524
PstNI CAGNNNCTG 1 cut(s) 735
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 6 cut(s) 58, 76, 277, 604, 697, 709
RsaNI GTAC 6 cut(s) 57, 75, 276, 603, 696, 708
SacI GAGCTC 1 cut(s) 325
SacII CCGCGG 1 cut(s) 471
SaqAI TTAA 4 cut(s) 89, 299, 567, 645
SatI GCNGC 4 cut(s) 103, 289, 292, 540
Sau3AI GATC 2 cut(s) 179, 726
Sau96I GGNCC 3 cut(s) 213, 523, 524
ScaI AGTACT 1 cut(s) 697
ScrFI CCNGG 3 cut(s) 120, 207, 280
SduI GDGCHC 3 cut(s) 232, 325, 527
SfaNI GCATC 2 cut(s) 464, 676
Sfr303I CCGCGG 1 cut(s) 471
SgrAI CRCCGGYG 3 cut(s) 308, 590, 607
SgrBI CCGCGG 1 cut(s) 471
SinI GGWCC 1 cut(s) 213
Sse9I AATT 4 cut(s) 60, 344, 628, 718
SsiI CCGC 9 cut(s) 102, 132, 159, 273, 288, 440, 468, 470, 620
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 118, 205, 278
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 4 cut(s) 239, 399, 423, 489
TaqI TCGA 4 cut(s) 220, 232, 249, 635
TasI AATT 4 cut(s) 60, 344, 628, 718
TatI WGTACW 4 cut(s) 56, 602, 695, 707
TauI GCSGC 2 cut(s) 105, 291
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 4 cut(s) 89, 299, 567, 645
Tru9I TTAA 4 cut(s) 89, 299, 567, 645
TseI GCWGC 2 cut(s) 291, 539
TspDTI ATGAA 3 cut(s) 22, 31, 443
TspGWI ACGGA 1 cut(s) 175
Van91I CCANNNNNTGG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.