AT1G75030

Pathogenesis-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015074
Physical Location & Seq
Forward (+)
28174187 .. 28175456
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75030.1

Sequence Viewer

Length: 741 bp
ATGGCGAAAATCTCCAGTATTCACATTCTCTTCTTCGTCTTCATCACAAGTGGCATTGCTGATTCCGCCACCGTATTCACTTTACAAAACAGTTGTGCGTACACCGTTTGGCCGGGAACTCTCTCCGGCAACAGCATCACCCTCGGCGACGGCGGATTTCCCTTAACTCCAGGCGCTTCCGTGCAGCTCACGGCTCCTACCGGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCAACTTTGACGCCTCCGGTCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAATGTACCGGCGGCGGAGTTCCTCCAGCGACTCTAGCGGAATTCACCGTGGGATCAAGCAATGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTAAAGATGGGGATAAAACCACAGGGAGGATTCGGAAATTGCAAATACGCAGGCTGCGTCTCGGACATCAACGAGATTTGCCCTAGCGAGCTTAGGATCATGGATCCGAATTCGGGAAGTGTCGCGGCGTGTAAGAGCGCTTGCGCGGCGTTTAGTTCGCCGGAATTTTGCTGTACTGGTGCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTTAAGAACGCTTGTCCTAGCGCTTATAGTTACGCTTACGACGACGCATCGAGCACTTTCACTTGTACCGGATCTAACTACTTGATCACTTTCTGCCCTACCCAGTCTTAA

Protein Analysis

246

Amino Acids

25.44

Weight (kDa)

4.94

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 30 - 243 2.8e-83 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca FvH4_2g40300
malus_domestica MD08G1036400.v1.1
prunus_persica Prupe.1G383700_v2.0.a1
pyrus_communis pycom08g02910
rosa_chinensis RchiOBHm_Chr6g0300441
rosa_laevigata RLG00000011337
rosa_multiflora Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii Rroxscaffold_7G00167780
rosa_rugosa Rorug06G0296100
rosa_samantha Rh6DG409100
rosa_wichuraiana Rw6G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 272
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 390
AccII CGCG 3 cut(s) 527, 548, 590
AclWI GGATC 5 cut(s) 355, 500, 506, 513, 709
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 3 cut(s) 335, 511, 566
AcyI GRCGYC 2 cut(s) 246, 593
AfaI GTAC 6 cut(s) 101, 229, 262, 301, 577, 697
AfeI AGCGCT 2 cut(s) 541, 652
AfiI CCNNNNNNNGG 3 cut(s) 220, 428, 515
AgeI ACCGGT 1 cut(s) 200
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 2 cut(s) 187, 493
AluI AGCT 2 cut(s) 187, 493
Alw21I GWGCWC 2 cut(s) 586, 686
Alw26I GTCTC 2 cut(s) 270, 466
AlwI GGATC 5 cut(s) 355, 500, 506, 513, 709
Aor51HI AGCGCT 2 cut(s) 541, 652
AoxI GGCC 2 cut(s) 110, 211
ApeKI GCWGC 3 cut(s) 184, 234, 456
ApoI RAATTY 3 cut(s) 335, 511, 566
AsiGI ACCGGT 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 260
AspLEI GCGC 4 cut(s) 176, 542, 548, 653
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 130, 262, 331
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BamHI GGATCC 1 cut(s) 505
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 586, 686
BbvI GCAGC 3 cut(s) 196, 221, 443
BccI CCATC 1 cut(s) 403
BceAI ACGGC 2 cut(s) 166, 207
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 270, 466
BfaI CTAG 3 cut(s) 329, 486, 648
BfoI RGCGCY 3 cut(s) 177, 543, 654
BfuAI ACCTGC 1 cut(s) 272
BisI GCNGC 9 cut(s) 185, 235, 283, 286, 307, 457, 528, 549, 596
BlsI GCNGC 9 cut(s) 186, 236, 284, 287, 308, 458, 529, 550, 597
Bme1390I CCNGG 2 cut(s) 114, 171
BmgBI CACGTC 1 cut(s) 379
BmiI GGNNCC 3 cut(s) 195, 262, 507
BmrFI CCNGG 2 cut(s) 114, 171
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 2 cut(s) 144, 686
BmuI ACTGGG 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 153, 303
Bpu10I CCTNAGC 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 2 cut(s) 246, 593
BsaJI CCNNGG 2 cut(s) 142, 342
BsaWI WCCGGW 4 cut(s) 200, 251, 272, 698
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 428, 515
Bse118I RCCGGY 5 cut(s) 200, 213, 230, 302, 359
Bse1I ACTGG 3 cut(s) 15, 583, 733
Bse3DI GCAATG 2 cut(s) 54, 361
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 142, 342
BseLI CCNNNNNNNGG 3 cut(s) 220, 428, 515
BseMI GCAATG 2 cut(s) 54, 361
BseNI ACTGG 3 cut(s) 15, 583, 733
BseXI GCAGC 3 cut(s) 196, 221, 443
BsgI GTGCAG 1 cut(s) 203
Bsh1236I CGCG 3 cut(s) 527, 548, 590
BshFI GGCC 2 cut(s) 112, 213
BshNI GGYRCC 1 cut(s) 260
BshTI ACCGGT 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 586, 686
BslI CCNNNNNNNGG 3 cut(s) 220, 428, 515
BsmAI GTCTC 2 cut(s) 270, 466
BsmBI CGTCTC 1 cut(s) 466
BsnI GGCC 2 cut(s) 112, 213
Bsp1286I GDGCHC 3 cut(s) 226, 586, 686
Bsp143I GATC 5 cut(s) 347, 498, 505, 701, 714
BspANI GGCC 2 cut(s) 112, 213
BspFNI CGCG 3 cut(s) 527, 548, 590
BspLI GGNNCC 3 cut(s) 195, 262, 507
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 5 cut(s) 355, 500, 506, 513, 709
BspT107I GGYRCC 1 cut(s) 260
BsrDI GCAATG 2 cut(s) 54, 361
BsrFI RCCGGY 5 cut(s) 200, 213, 230, 302, 359
BsrI ACTGG 3 cut(s) 15, 583, 733
BssAI RCCGGY 5 cut(s) 200, 213, 230, 302, 359
BssECI CCNNGG 2 cut(s) 142, 342
BssMI GATC 5 cut(s) 347, 498, 505, 701, 714
BssNI GRCGYC 2 cut(s) 246, 593
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 6 cut(s) 73, 92, 106, 260, 343, 395
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 2 cut(s) 246, 593
BstC8I GCNNGC 4 cut(s) 361, 454, 491, 544
BstDEI CTNAG 1 cut(s) 494
BstDSI CCRYGG 1 cut(s) 342
BstFNI CGCG 3 cut(s) 527, 548, 590
BstH2I RGCGCY 3 cut(s) 177, 543, 654
BstHHI GCGC 4 cut(s) 176, 542, 548, 653
BstKTI GATC 5 cut(s) 350, 501, 508, 704, 717
BstMAI GTCTC 2 cut(s) 270, 466
BstMBI GATC 5 cut(s) 347, 498, 505, 701, 714
BstMWI GCNNNNNNNGC 4 cut(s) 65, 329, 360, 548
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 112, 169
BstUI CGCG 3 cut(s) 527, 548, 590
BstV1I GCAGC 3 cut(s) 196, 221, 443
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 505, 701
BstYI RGATCY 2 cut(s) 505, 701
BsuRI GGCC 2 cut(s) 112, 213
BtgI CCRYGG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 379
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 4 cut(s) 361, 454, 491, 544
CfoI GCGC 4 cut(s) 176, 542, 548, 653
Cfr10I RCCGGY 5 cut(s) 200, 213, 230, 302, 359
CseI GACGC 5 cut(s) 254, 256, 448, 601, 683
Csp6I GTAC 6 cut(s) 100, 228, 261, 300, 576, 696
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 3 cut(s) 364, 502, 628
CviJI RGCY 9 cut(s) 112, 187, 194, 213, 224, 234, 384, 456, 493
CviKI_1 RGCY 9 cut(s) 112, 187, 194, 213, 224, 234, 384, 456, 493
CviQI GTAC 6 cut(s) 100, 228, 261, 300, 576, 696
DdeI CTNAG 1 cut(s) 494
DpnI GATC 5 cut(s) 349, 500, 507, 703, 716
DpnII GATC 5 cut(s) 347, 498, 505, 701, 714
DraI TTTAAA 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 3 cut(s) 55, 168, 324
Eco24I GRGCYC 1 cut(s) 226
Eco47III AGCGCT 2 cut(s) 541, 652
EcoRI GAATTC 2 cut(s) 335, 511
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 3 cut(s) 367, 505, 631
FaiI YATR 4 cut(s) 365, 503, 629, 657
FatI CATG 3 cut(s) 363, 501, 627
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 9 cut(s) 185, 235, 283, 286, 307, 457, 528, 549, 596
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 9 cut(s) 185, 235, 283, 286, 307, 457, 528, 549, 596
FspBI CTAG 3 cut(s) 329, 486, 648
GlaI GCGC 4 cut(s) 175, 541, 547, 652
GluI GCNGC 9 cut(s) 185, 235, 283, 286, 307, 457, 528, 549, 596
GsuI CTGGAG 2 cut(s) 153, 303
HaeII RGCGCY 3 cut(s) 177, 543, 654
HaeIII GGCC 2 cut(s) 112, 213
HgaI GACGC 5 cut(s) 254, 256, 448, 601, 683
HhaI GCGC 4 cut(s) 176, 542, 548, 653
Hin1I GRCGYC 2 cut(s) 246, 593
Hin1II CATG 3 cut(s) 367, 505, 631
Hin6I GCGC 4 cut(s) 174, 540, 546, 651
HinP1I GCGC 4 cut(s) 174, 540, 546, 651
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 3 cut(s) 62, 325, 432
HphI GGTGA 3 cut(s) 130, 262, 331
Hpy166II GTNNAC 2 cut(s) 102, 391
Hpy188I TCNGA 4 cut(s) 437, 466, 510, 612
Hpy188III TCNNGA 1 cut(s) 516
Hpy8I GTNNAC 2 cut(s) 102, 391
Hpy99I CGWCG 8 cut(s) 152, 380, 392, 395, 595, 616, 674, 677
HpyCH4III ACNGT 6 cut(s) 73, 92, 106, 260, 343, 395
HpyCH4IV ACGT 2 cut(s) 378, 614
HpyCH4V TGCA 3 cut(s) 184, 237, 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 329, 360, 548
HpyF3I CTNAG 1 cut(s) 494
HpySE526I ACGT 2 cut(s) 378, 614
Hsp92I GRCGYC 2 cut(s) 246, 593
Hsp92II CATG 3 cut(s) 367, 505, 631
HspAI GCGC 4 cut(s) 174, 540, 546, 651
KpnI GGTACC 1 cut(s) 264
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 5 cut(s) 347, 498, 505, 701, 714
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 196, 221, 443
LweI GCATC 2 cut(s) 144, 686
MaeI CTAG 3 cut(s) 329, 486, 648
MaeII ACGT 2 cut(s) 378, 614
MaeIII GTNAC 4 cut(s) 254, 268, 395, 659
MalI GATC 5 cut(s) 349, 500, 507, 703, 716
MboI GATC 5 cut(s) 347, 498, 505, 701, 714
MboII GAAGA 3 cut(s) 22, 25, 31
MflI RGATCY 2 cut(s) 505, 701
MhlI GDGCHC 3 cut(s) 226, 586, 686
MluCI AATT 4 cut(s) 335, 439, 511, 566
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 635
MnlI CCTC 5 cut(s) 152, 259, 327, 395, 422
MroNI GCCGGC 1 cut(s) 359
MseI TTAA 4 cut(s) 164, 293, 633, 739
MspR9I CCNGG 2 cut(s) 114, 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 3 cut(s) 527, 548, 590
MwoI GCNNNNNNNGC 4 cut(s) 65, 329, 360, 548
NaeI GCCGGC 1 cut(s) 361
NciI CCSGG 1 cut(s) 114
NdeII GATC 5 cut(s) 347, 498, 505, 701, 714
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 3 cut(s) 367, 505, 631
NlaIV GGNNCC 3 cut(s) 195, 262, 507
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 254, 268
PcsI WCGNNNNNNNCGW 5 cut(s) 264, 384, 456, 620, 669
PdiI GCCGGC 1 cut(s) 361
PfeI GAWTC 2 cut(s) 62, 432
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 9 cut(s) 186, 236, 284, 287, 308, 458, 529, 550, 597
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 195, 262, 507
PsuI RGATCY 2 cut(s) 505, 701
RsaI GTAC 6 cut(s) 101, 229, 262, 301, 577, 697
RsaNI GTAC 6 cut(s) 100, 228, 261, 300, 576, 696
SalI GTCGAC 1 cut(s) 389
SaqAI TTAA 4 cut(s) 164, 293, 633, 739
SatI GCNGC 9 cut(s) 185, 235, 283, 286, 307, 457, 528, 549, 596
Sau3AI GATC 5 cut(s) 347, 498, 505, 701, 714
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 114, 171
SduI GDGCHC 3 cut(s) 226, 586, 686
SetI ASST 5 cut(s) 189, 266, 381, 495, 617
SfaNI GCATC 2 cut(s) 144, 686
SgrDI CGTCGACG 1 cut(s) 389
Sse9I AATT 4 cut(s) 335, 439, 511, 566
SspMI CTAG 3 cut(s) 329, 486, 648
StyD4I CCNGG 2 cut(s) 112, 169
TaaI ACNGT 6 cut(s) 73, 92, 106, 260, 343, 395
TaiI ACGT 2 cut(s) 381, 617
TaqI TCGA 2 cut(s) 390, 680
TasI AATT 4 cut(s) 335, 439, 511, 566
TatI WGTACW 1 cut(s) 575
TauI GCSGC 6 cut(s) 285, 288, 309, 530, 551, 598
TfiI GAWTC 2 cut(s) 62, 432
Tru1I TTAA 4 cut(s) 164, 293, 633, 739
Tru9I TTAA 4 cut(s) 164, 293, 633, 739
TseFI GTSAC 2 cut(s) 254, 268
TseI GCWGC 3 cut(s) 184, 234, 456
Tsp45I GTSAC 2 cut(s) 254, 268
TspDTI ATGAA 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 169
XapI RAATTY 3 cut(s) 335, 511, 566
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 3 cut(s) 329, 486, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.