Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Forward (+)

59559356 .. 59561553

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGGAATTAACAGACATACATCAAAACATACCATGGTGTCCAACTACAGAAAACCTAGTTTCCGCAACAGTTTTTACGCTGCAAAACCGATGCCCCTACACAGTCTGGCCCGGCACACTCTCCGGAAACGGCGCCGCAGTTCTCGGCGAAGGCGGTTTCGCCATGTTCCCCGGTGCATTAGTCCAGCTCACAGCCCCGACCGGCTGGTCCGGCCGCTTCTGGGCCAGAACCGGCTGCAACTTCGACGAAGCCGGTAACGGAAACTGCCTCACCGGAGACTGCGGCTCCCTAAAATGCACCGGCGGCGGCGCACCTCCCGTCACCTTGGCTGAGTTCACCATCGGGTCGAGCGTAACCGACAAGGACTTCTATGACGTCAGCCTCGTCGACGGTTACAACGTCGGCATGGGGCTGAGGGCCACCGGAGGAGACGGCGACTGCCAGTACGCTGGGTGCGTGACGGACTTGAACGCCAACTGCCCGCCCGAGTTGCGGGTCACGGATTCGGGTTCGGGTGTTGTGGTGGCTTGTAAGAGCGCGTGCGAGGCGTTCAACGCGCCTGAGTTTTGCTGCACCGGCGACCACGCCACCCCGCAGACTTGCTCTCCGACTCAGTACTCCGCCATGTTCAAGAGTGCGTGTCCCACGGCGTATAGCTATGCTTATGATGATGCTTCAAGCACCTGTACCTGTACCGGGTCGGATTACTTGATCACATTTTGCCCCACCGGGTCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

247

Amino Acids

25.66

Weight (kDa)

4.24

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	30 - 243	1e-79	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
AatII	GACGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	2 cut(s)	542, 560
AccIII	TCCGGA	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	2 cut(s)	135, 378
AfaI	GTAC	4 cut(s)	449, 620, 691, 697
AfiI	CCNNNNNNNGG	3 cut(s)	223, 495, 699
AgsI	TTSAA	4 cut(s)	472, 556, 634, 681
AluBI	AGCT	2 cut(s)	190, 660
AluI	AGCT	2 cut(s)	190, 660
Alw26I	GTCTC	2 cut(s)	273, 426
Ama87I	CYCGRG	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	125
AoxI	GGCC	4 cut(s)	110, 214, 225, 420
ApeKI	GCWGC	3 cut(s)	82, 237, 573
AspLEI	GCGC	4 cut(s)	137, 314, 542, 562
AspS9I	GGNCC	4 cut(s)	111, 210, 225, 420
AsuC2I	CCSGG	4 cut(s)	114, 174, 700, 733
AsuHPI	GGTGA	3 cut(s)	265, 316, 331
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	69, 224, 560
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	3 cut(s)	148, 451, 666
BclI	TGATCA	1 cut(s)	714
BcnI	CCSGG	4 cut(s)	114, 174, 700, 733
BcoDI	GTCTC	2 cut(s)	273, 426
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	8 cut(s)	83, 138, 217, 238, 286, 307, 310, 574
BlsI	GCNGC	8 cut(s)	84, 139, 218, 239, 287, 308, 311, 575
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	4 cut(s)	114, 174, 700, 733
Bme18I	GGWCC	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	4 cut(s)	111, 210, 225, 420
BmiI	GGNNCC	2 cut(s)	136, 289
BmrFI	CCNGG	4 cut(s)	114, 174, 700, 733
BmsI	GCATC	2 cut(s)	83, 664
Bpu10I	CCTNAGC	1 cut(s)	416
BpuMI	CCSGG	4 cut(s)	114, 174, 700, 733
BsaHI	GRCGYC	2 cut(s)	135, 378
BsaJI	CCNNGG	4 cut(s)	35, 172, 327, 648
BsaWI	WCCGGW	3 cut(s)	125, 275, 425
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 592, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 495, 699
Bse118I	RCCGGY	5 cut(s)	203, 233, 254, 302, 578
Bse1I	ACTGG	1 cut(s)	445
BseAI	TCCGGA	1 cut(s)	125
BseDI	CCNNGG	4 cut(s)	35, 172, 327, 648
BseLI	CCNNNNNNNGG	3 cut(s)	223, 495, 699
BseMII	CTCAG	4 cut(s)	324, 407, 555, 629
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	444
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	3 cut(s)	69, 224, 560
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	1 cut(s)	559
Bsh1236I	CGCG	2 cut(s)	542, 560
Bsh1285I	CGRYCG	2 cut(s)	204, 217
BshFI	GGCC	4 cut(s)	112, 216, 227, 422
BshNI	GGYRCC	1 cut(s)	134
BsiEI	CGRYCG	2 cut(s)	204, 217
BsiHKCI	CYCGRG	1 cut(s)	488
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	3 cut(s)	223, 495, 699
BsmAI	GTCTC	2 cut(s)	273, 426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	4 cut(s)	112, 216, 227, 422
BsoBI	CYCGRG	1 cut(s)	488
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	35
BspANI	GGCC	4 cut(s)	112, 216, 227, 422
BspCNI	CTCAG	4 cut(s)	325, 408, 556, 628
BspEI	TCCGGA	1 cut(s)	125
BspFNI	CGCG	2 cut(s)	542, 560
BspLI	GGNNCC	2 cut(s)	136, 289
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	5 cut(s)	203, 233, 254, 302, 578
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	5 cut(s)	203, 233, 254, 302, 578
BssECI	CCNNGG	4 cut(s)	35, 172, 327, 648
BssMI	GATC	1 cut(s)	714
BssNI	GRCGYC	2 cut(s)	135, 378
BssT1I	CCWWGG	2 cut(s)	35, 327
Bst4CI	ACNGT	3 cut(s)	73, 106, 395
BstACI	GRCGYC	2 cut(s)	135, 378
BstC8I	GCNNGC	2 cut(s)	485, 544
BstDEI	CTNAG	4 cut(s)	333, 416, 564, 615
BstDSI	CCRYGG	2 cut(s)	35, 648
BstFNI	CGCG	2 cut(s)	542, 560
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	4 cut(s)	137, 314, 542, 562
BstKTI	GATC	1 cut(s)	717
BstMAI	GTCTC	2 cut(s)	273, 426
BstMBI	GATC	1 cut(s)	714
BstMCI	CGRYCG	2 cut(s)	204, 217
BstMWI	GCNNNNNNNGC	6 cut(s)	213, 306, 493, 548, 557, 579
BstSCI	CCNGG	4 cut(s)	112, 172, 698, 731
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	2 cut(s)	542, 560
BstV1I	GCAGC	3 cut(s)	69, 224, 560
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstZI	CGGCCG	1 cut(s)	214
BsuRI	GGCC	4 cut(s)	112, 216, 227, 422
BtgI	CCRYGG	2 cut(s)	35, 648
Cac8I	GCNNGC	2 cut(s)	485, 544
CfoI	GCGC	4 cut(s)	137, 314, 542, 562
Cfr10I	RCCGGY	5 cut(s)	203, 233, 254, 302, 578
Cfr13I	GGNCC	4 cut(s)	111, 210, 225, 420
Csp6I	GTAC	4 cut(s)	448, 619, 690, 696
CviAII	CATG	4 cut(s)	36, 166, 409, 628
CviQI	GTAC	4 cut(s)	448, 619, 690, 696
DdeI	CTNAG	4 cut(s)	333, 416, 564, 615
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	1 cut(s)	716
DpnII	GATC	1 cut(s)	714
DrdI	GACNNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	613
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	35, 327
Eco47I	GGWCC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	35, 327
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	35, 327
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	4 cut(s)	39, 169, 412, 631
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	4 cut(s)	35, 165, 408, 627
FauI	CCCGC	3 cut(s)	489, 492, 603
FbaI	TGATCA	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	8 cut(s)	83, 138, 217, 238, 286, 307, 310, 574
Fsp4HI	GCNGC	8 cut(s)	83, 138, 217, 238, 286, 307, 310, 574
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	4 cut(s)	136, 313, 541, 561
GluI	GCNGC	8 cut(s)	83, 138, 217, 238, 286, 307, 310, 574
GsaI	CCCAGC	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	112, 216, 227, 422
HhaI	GCGC	4 cut(s)	137, 314, 542, 562
Hin1I	GRCGYC	2 cut(s)	135, 378
Hin1II	CATG	4 cut(s)	39, 169, 412, 631
Hin6I	GCGC	4 cut(s)	135, 312, 540, 560
HinP1I	GCGC	4 cut(s)	135, 312, 540, 560
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	506, 613
HphI	GGTGA	3 cut(s)	265, 316, 331
Hpy166II	GTNNAC	2 cut(s)	339, 391
Hpy188I	TCNGA	2 cut(s)	612, 706
Hpy188III	TCNNGA	2 cut(s)	126, 634
Hpy8I	GTNNAC	2 cut(s)	339, 391
Hpy99I	CGWCG	4 cut(s)	251, 392, 395, 407
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	73, 106, 395
HpyCH4IV	ACGT	2 cut(s)	378, 402
HpyCH4V	TGCA	5 cut(s)	85, 179, 240, 300, 576
HpyF10VI	GCNNNNNNNGC	6 cut(s)	213, 306, 493, 548, 557, 579
HpyF3I	CTNAG	4 cut(s)	333, 416, 564, 615
HpySE526I	ACGT	2 cut(s)	378, 402
Hsp92I	GRCGYC	2 cut(s)	135, 378
Hsp92II	CATG	4 cut(s)	39, 169, 412, 631
HspAI	GCGC	4 cut(s)	135, 312, 540, 560
KasI	GGCGCC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	1 cut(s)	714
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	3 cut(s)	69, 224, 560
LweI	GCATC	2 cut(s)	83, 664
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	378, 402
MaeIII	GTNAC	6 cut(s)	257, 322, 355, 395, 460, 499
MalI	GATC	1 cut(s)	716
MboI	GATC	1 cut(s)	714
MluCI	AATT	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	3 cut(s)	68, 635, 684
MnlI	CCTC	6 cut(s)	281, 327, 395, 411, 422, 541
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	1 cut(s)	11
MspR9I	CCNGG	4 cut(s)	114, 174, 700, 733
MvnI	CGCG	2 cut(s)	542, 560
MwoI	GCNNNNNNNGC	6 cut(s)	213, 306, 493, 548, 557, 579
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	4 cut(s)	114, 174, 700, 733
NcoI	CCATGG	1 cut(s)	35
NdeII	GATC	1 cut(s)	714
NlaIII	CATG	4 cut(s)	39, 169, 412, 631
NlaIV	GGNNCC	2 cut(s)	136, 289
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	3 cut(s)	322, 460, 499
PcsI	WCGNNNNNNNCGW	4 cut(s)	351, 384, 399, 456
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	8 cut(s)	84, 139, 218, 239, 287, 308, 311, 575
PleI	GAGTC	1 cut(s)	607
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	136, 289
PspPI	GGNCC	4 cut(s)	111, 210, 225, 420
RsaI	GTAC	4 cut(s)	449, 620, 691, 697
RsaNI	GTAC	4 cut(s)	448, 619, 690, 696
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	8 cut(s)	83, 138, 217, 238, 286, 307, 310, 574
Sau3AI	GATC	1 cut(s)	714
Sau96I	GGNCC	4 cut(s)	111, 210, 225, 420
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	4 cut(s)	114, 174, 700, 733
SetI	ASST	9 cut(s)	60, 192, 319, 329, 381, 405, 662, 689, 695
SfaNI	GCATC	2 cut(s)	83, 664
SfcI	CTRYAG	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	136
SgrAI	CRCCGGYG	2 cut(s)	302, 578
SgrDI	CGTCGACG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	1 cut(s)	8
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	4 cut(s)	112, 172, 698, 731
StyI	CCWWGG	2 cut(s)	35, 327
TaaI	ACNGT	3 cut(s)	73, 106, 395
TaiI	ACGT	2 cut(s)	381, 405
TaqI	TCGA	3 cut(s)	246, 350, 390
TasI	AATT	1 cut(s)	8
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	5 cut(s)	140, 219, 288, 309, 312
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseFI	GTSAC	3 cut(s)	322, 460, 499
TseI	GCWGC	3 cut(s)	82, 237, 573
Tsp45I	GTSAC	3 cut(s)	322, 460, 499
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	276, 479, 518
VpaK11BI	GGWCC	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.