Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Reverse (-)

28739508 .. 28740775

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTATGAGCAGGGTGGGTGCACATCTCTAAATATCTTATGCATGCATCCAACTATAAATACCTATCAAATCCCTCTCCCATTCAACAACGATCAACTTCCTCCTCCTTCCAGAACCACACTGTATCGATCTCAGTCCACCACTCTTCTAAGATTTCAGTTCTTCTTCTTCTCTCTAACGGCGATCACCATGACTTCAAACAAGCTCAGTCTCTATCTTCTTCCTTTGATCATCGCATCATTAGCTGCGACAAACGTAGTGTACGCAACCATTTTCACGCTCCAAAACCACTGCCCCTACACAGTCTGGCCCGGCACACTCTCCGGTAACGGCGCCGCAGTTCTCGGCGAAGGCGGTTTCGCCATGTTCCCCGGTGCGGAAATCCAGCTCACCGCCCCGGCCGGCTGGTCCGGCCGCTTCTGGGCACGAACCGGCTGCAACTTCGACGAAGCCGGAAACGGAAAATGCGTCACCGGCGACTGCGGCGGCGCCCTGAAATGCACCGGCGGCGGCGAACCTCCCGTCACCTTGGCCGAGTTCACCGTCGGGTCGACACTAACCGACAAGGACTTCTATGACGTCAGCCTCGTGGACGGTTACAACGTCGGCATGGGGCTGAGGGCCACCGGCGGAGACGGTGACTGCCAGTACGCGGGTTGCGTGAGCGACTTGAACACCAACTGCCCGCCCGAGTTGCGGGTCACGGATTCGGGTTCGGGCGTGGTGGTCGCGTGCAAGAGCGCGTGCGAGGCGTTCAACGCGCCCGAGTTTTGCTGCACCGGCGACCACGCGACCCCGCAGACTTGCTCTCCGACTCAATACTCGGCCATGTTCAAGAGCGCTTGTCCCACGGCGTATAGCTACGCTTATGATGACGCTACTAGCACTTGTACCTGTACCGGGTCGGATTACTTGATCACGTTTTGCCCCACCGGGTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

315

Amino Acids

33.17

Weight (kDa)

4.51

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	96 - 310	2.8e-81	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	582
AccB1I	GGYRCC	2 cut(s)	332, 488
AccI	GTMKAC	1 cut(s)	551
AccII	CGCG	5 cut(s)	653, 731, 743, 761, 791
AcoI	YGGCCR	4 cut(s)	399, 412, 531, 825
AcyI	GRCGYC	3 cut(s)	333, 489, 579
AfaI	GTAC	4 cut(s)	263, 650, 892, 898
AfeI	AGCGCT	1 cut(s)	841
AfiI	CCNNNNNNNGG	5 cut(s)	376, 421, 652, 696, 900
AgsI	TTSAA	5 cut(s)	85, 198, 673, 757, 835
AluBI	AGCT	4 cut(s)	205, 245, 388, 861
AluI	AGCT	4 cut(s)	205, 245, 388, 861
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	215, 627
Alw44I	GTGCAC	1 cut(s)	19
Ama87I	CYCGRG	2 cut(s)	689, 764
Aor51HI	AGCGCT	1 cut(s)	841
AoxI	GGCC	6 cut(s)	308, 399, 412, 531, 621, 825
ApaLI	GTGCAC	1 cut(s)	19
ApeKI	GCWGC	3 cut(s)	245, 435, 774
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AspLEI	GCGC	5 cut(s)	335, 491, 743, 763, 842
AspS9I	GGNCC	3 cut(s)	309, 408, 621
AsuC2I	CCSGG	5 cut(s)	312, 372, 398, 901, 934
AsuHPI	GGTGA	6 cut(s)	178, 382, 463, 517, 532, 650
AvaI	CYCGRG	2 cut(s)	689, 764
AvaII	GGWCC	1 cut(s)	408
BaeGI	GKGCMC	2 cut(s)	23, 427
BanI	GGYRCC	2 cut(s)	332, 488
BauI	CACGAG	1 cut(s)	587
Bbv12I	GWGCWC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	617
BbvI	GCAGC	3 cut(s)	232, 422, 761
BceAI	ACGGC	3 cut(s)	195, 346, 867
BcgI	CGANNNNNNTGC	2 cut(s)	417, 451
BclI	TGATCA	2 cut(s)	228, 915
BcnI	CCSGG	5 cut(s)	312, 372, 398, 901, 934
BcoDI	GTCTC	2 cut(s)	215, 627
BfaI	CTAG	1 cut(s)	882
BfoI	RGCGCY	3 cut(s)	336, 492, 843
BisI	GCNGC	9 cut(s)	246, 336, 415, 436, 484, 487, 508, 511, 775
BlsI	GCNGC	9 cut(s)	247, 337, 416, 437, 485, 488, 509, 512, 776
Bme1390I	CCNGG	5 cut(s)	312, 372, 398, 901, 934
Bme18I	GGWCC	1 cut(s)	408
BmeT110I	CYCGRG	2 cut(s)	689, 764
BmgT120I	GGNCC	3 cut(s)	309, 408, 621
BmiI	GGNNCC	2 cut(s)	334, 490
BmrFI	CCNGG	5 cut(s)	312, 372, 398, 901, 934
BmsI	GCATC	2 cut(s)	55, 245
Bpu10I	CCTNAGC	1 cut(s)	617
BpuMI	CCSGG	5 cut(s)	312, 372, 398, 901, 934
Bsa29I	ATCGAT	1 cut(s)	127
BsaHI	GRCGYC	3 cut(s)	333, 489, 579
BsaJI	CCNNGG	4 cut(s)	370, 396, 528, 849
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	5 cut(s)	376, 421, 652, 696, 900
Bse118I	RCCGGY	6 cut(s)	401, 431, 473, 503, 626, 779
Bse1I	ACTGG	1 cut(s)	646
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	4 cut(s)	370, 396, 528, 849
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	5 cut(s)	376, 421, 652, 696, 900
BseMII	CTCAG	3 cut(s)	146, 220, 608
BseNI	ACTGG	1 cut(s)	646
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	2 cut(s)	23, 427
BseX3I	CGGCCG	2 cut(s)	399, 412
BseXI	GCAGC	3 cut(s)	232, 422, 761
BsgI	GTGCAG	1 cut(s)	760
Bsh1236I	CGCG	5 cut(s)	653, 731, 743, 761, 791
Bsh1285I	CGRYCG	2 cut(s)	402, 415
BshFI	GGCC	6 cut(s)	310, 401, 414, 533, 623, 827
BshNI	GGYRCC	2 cut(s)	332, 488
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	2 cut(s)	402, 415
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	2 cut(s)	689, 764
BslFI	GGGAC	1 cut(s)	831
BslI	CCNNNNNNNGG	5 cut(s)	376, 421, 652, 696, 900
BsmAI	GTCTC	2 cut(s)	215, 627
BsmBI	CGTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	831
BsnI	GGCC	6 cut(s)	310, 401, 414, 533, 623, 827
BsoBI	CYCGRG	2 cut(s)	689, 764
Bsp1286I	GDGCHC	2 cut(s)	23, 427
Bsp143I	GATC	5 cut(s)	91, 128, 183, 228, 915
BspANI	GGCC	6 cut(s)	310, 401, 414, 533, 623, 827
BspCNI	CTCAG	3 cut(s)	145, 219, 609
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	5 cut(s)	653, 731, 743, 761, 791
BspHI	TCATGA	1 cut(s)	941
BspLI	GGNNCC	2 cut(s)	334, 490
BspT107I	GGYRCC	2 cut(s)	332, 488
BsrFI	RCCGGY	6 cut(s)	401, 431, 473, 503, 626, 779
BsrI	ACTGG	1 cut(s)	646
BssAI	RCCGGY	6 cut(s)	401, 431, 473, 503, 626, 779
BssECI	CCNNGG	4 cut(s)	370, 396, 528, 849
BssMI	GATC	5 cut(s)	91, 128, 183, 228, 915
BssNI	GRCGYC	3 cut(s)	333, 489, 579
BssSI	CACGAG	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	587
Bst4CI	ACNGT	5 cut(s)	123, 304, 544, 596, 638
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	3 cut(s)	333, 489, 579
BstC8I	GCNNGC	5 cut(s)	44, 403, 686, 733, 745
BstDEI	CTNAG	4 cut(s)	132, 149, 206, 617
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	5 cut(s)	653, 731, 743, 761, 791
BstH2I	RGCGCY	3 cut(s)	336, 492, 843
BstHHI	GCGC	5 cut(s)	335, 491, 743, 763, 842
BstKTI	GATC	5 cut(s)	94, 131, 186, 231, 918
BstMAI	GTCTC	2 cut(s)	215, 627
BstMBI	GATC	5 cut(s)	91, 128, 183, 228, 915
BstMCI	CGRYCG	2 cut(s)	402, 415
BstMWI	GCNNNNNNNGC	9 cut(s)	242, 411, 474, 483, 507, 694, 749, 758, 780
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	5 cut(s)	310, 370, 396, 899, 932
BstSLI	GKGCMC	2 cut(s)	23, 427
BstUI	CGCG	5 cut(s)	653, 731, 743, 761, 791
BstV1I	GCAGC	3 cut(s)	232, 422, 761
BstZI	CGGCCG	2 cut(s)	399, 412
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	6 cut(s)	310, 401, 414, 533, 623, 827
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	849
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	119, 289
Cac8I	GCNNGC	5 cut(s)	44, 403, 686, 733, 745
CciI	TCATGA	1 cut(s)	941
CfoI	GCGC	5 cut(s)	335, 491, 743, 763, 842
Cfr10I	RCCGGY	6 cut(s)	401, 431, 473, 503, 626, 779
Cfr13I	GGNCC	3 cut(s)	309, 408, 621
ClaI	ATCGAT	1 cut(s)	127
CseI	GACGC	2 cut(s)	457, 884
Csp6I	GTAC	4 cut(s)	262, 649, 891, 897
CviAII	CATG	6 cut(s)	43, 190, 364, 610, 829, 942
CviQI	GTAC	4 cut(s)	262, 649, 891, 897
DdeI	CTNAG	4 cut(s)	132, 149, 206, 617
DinI	GGCGCC	2 cut(s)	334, 490
DpnI	GATC	5 cut(s)	93, 130, 185, 230, 917
DpnII	GATC	5 cut(s)	91, 128, 183, 228, 915
EaeI	YGGCCR	4 cut(s)	399, 412, 531, 825
EagI	CGGCCG	2 cut(s)	399, 412
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	645
EclXI	CGGCCG	2 cut(s)	399, 412
Eco130I	CCWWGG	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	408
Eco47III	AGCGCT	1 cut(s)	841
Eco52I	CGGCCG	2 cut(s)	399, 412
Eco88I	CYCGRG	2 cut(s)	689, 764
EcoT14I	CCWWGG	1 cut(s)	528
EcoT22I	ATGCAT	2 cut(s)	44, 48
EgeI	GGCGCC	2 cut(s)	334, 490
EheI	GGCGCC	2 cut(s)	334, 490
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	6 cut(s)	46, 193, 367, 613, 832, 945
FaqI	GGGAC	1 cut(s)	831
FatI	CATG	6 cut(s)	42, 189, 363, 609, 828, 941
FauI	CCCGC	4 cut(s)	646, 690, 693, 804
FbaI	TGATCA	2 cut(s)	228, 915
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	9 cut(s)	246, 336, 415, 436, 484, 487, 508, 511, 775
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	9 cut(s)	246, 336, 415, 436, 484, 487, 508, 511, 775
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	5 cut(s)	334, 490, 742, 762, 841
GluI	GCNGC	9 cut(s)	246, 336, 415, 436, 484, 487, 508, 511, 775
HaeII	RGCGCY	3 cut(s)	336, 492, 843
HaeIII	GGCC	6 cut(s)	310, 401, 414, 533, 623, 827
HgaI	GACGC	2 cut(s)	457, 884
HhaI	GCGC	5 cut(s)	335, 491, 743, 763, 842
Hin1I	GRCGYC	3 cut(s)	333, 489, 579
Hin1II	CATG	6 cut(s)	46, 193, 367, 613, 832, 945
Hin6I	GCGC	5 cut(s)	333, 489, 741, 761, 840
HinP1I	GCGC	5 cut(s)	333, 489, 741, 761, 840
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	2 cut(s)	707, 814
HphI	GGTGA	6 cut(s)	178, 382, 463, 517, 532, 650
Hpy166II	GTNNAC	6 cut(s)	21, 138, 262, 540, 552, 592
Hpy188I	TCNGA	2 cut(s)	813, 907
Hpy188III	TCNNGA	3 cut(s)	111, 835, 942
Hpy8I	GTNNAC	6 cut(s)	21, 138, 262, 540, 552, 592
Hpy99I	CGWCG	3 cut(s)	449, 548, 608
HpyAV	CCTTC	2 cut(s)	117, 344
HpyCH4III	ACNGT	5 cut(s)	123, 304, 544, 596, 638
HpyCH4IV	ACGT	4 cut(s)	255, 579, 603, 920
HpyCH4V	TGCA	7 cut(s)	21, 42, 46, 438, 501, 735, 777
HpyF10VI	GCNNNNNNNGC	9 cut(s)	242, 411, 474, 483, 507, 694, 749, 758, 780
HpyF3I	CTNAG	4 cut(s)	132, 149, 206, 617
HpySE526I	ACGT	4 cut(s)	255, 579, 603, 920
Hsp92I	GRCGYC	3 cut(s)	333, 489, 579
Hsp92II	CATG	6 cut(s)	46, 193, 367, 613, 832, 945
HspAI	GCGC	5 cut(s)	333, 489, 741, 761, 840
KasI	GGCGCC	2 cut(s)	332, 488
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Ksp22I	TGATCA	2 cut(s)	228, 915
Kzo9I	GATC	5 cut(s)	91, 128, 183, 228, 915
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	3 cut(s)	232, 422, 761
LweI	GCATC	2 cut(s)	55, 245
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	4 cut(s)	255, 579, 603, 920
MaeIII	GTNAC	6 cut(s)	326, 469, 523, 596, 638, 700
MalI	GATC	5 cut(s)	93, 130, 185, 230, 917
MboI	GATC	5 cut(s)	91, 128, 183, 228, 915
MboII	GAAGA	6 cut(s)	137, 154, 157, 160, 209, 212
MhlI	GDGCHC	2 cut(s)	23, 427
Mly113I	GGCGCC	2 cut(s)	333, 489
MlyI	GAGTC	1 cut(s)	808
MmeI	TCCRAC	3 cut(s)	74, 836, 885
MnlI	CCTC	7 cut(s)	84, 111, 114, 528, 596, 612, 742
Mph1103I	ATGCAT	2 cut(s)	44, 48
MroNI	GCCGGC	1 cut(s)	401
MspR9I	CCNGG	5 cut(s)	312, 372, 398, 901, 934
MvnI	CGCG	5 cut(s)	653, 731, 743, 761, 791
MwoI	GCNNNNNNNGC	9 cut(s)	242, 411, 474, 483, 507, 694, 749, 758, 780
NaeI	GCCGGC	1 cut(s)	403
NarI	GGCGCC	2 cut(s)	333, 489
NciI	CCSGG	5 cut(s)	312, 372, 398, 901, 934
NdeII	GATC	5 cut(s)	91, 128, 183, 228, 915
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	6 cut(s)	46, 193, 367, 613, 832, 945
NlaIV	GGNNCC	2 cut(s)	334, 490
NmeAIII	GCCGAG	3 cut(s)	324, 559, 803
NmuCI	GTSAC	4 cut(s)	469, 523, 638, 700
NsiI	ATGCAT	2 cut(s)	44, 48
NspI	RCATGY	1 cut(s)	46
PaeI	GCATGC	1 cut(s)	46
PagI	TCATGA	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	4 cut(s)	465, 585, 600, 657
PdiI	GCCGGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	707
PkrI	GCNGC	9 cut(s)	247, 337, 416, 437, 485, 488, 509, 512, 776
PleI	GAGTC	1 cut(s)	808
PluTI	GGCGCC	2 cut(s)	336, 492
PpsI	GAGTC	1 cut(s)	808
PspN4I	GGNNCC	2 cut(s)	334, 490
PspPI	GGNCC	3 cut(s)	309, 408, 621
RsaI	GTAC	4 cut(s)	263, 650, 892, 898
RsaNI	GTAC	4 cut(s)	262, 649, 891, 897
SalI	GTCGAC	1 cut(s)	550
SatI	GCNGC	9 cut(s)	246, 336, 415, 436, 484, 487, 508, 511, 775
Sau3AI	GATC	5 cut(s)	91, 128, 183, 228, 915
Sau96I	GGNCC	3 cut(s)	309, 408, 621
SchI	GAGTC	1 cut(s)	808
ScrFI	CCNGG	5 cut(s)	312, 372, 398, 901, 934
SduI	GDGCHC	2 cut(s)	23, 427
SfaNI	GCATC	2 cut(s)	55, 245
SfoI	GGCGCC	2 cut(s)	334, 490
SgrAI	CRCCGGYG	4 cut(s)	473, 503, 626, 779
SinI	GGWCC	1 cut(s)	408
SphI	GCATGC	1 cut(s)	46
SspDI	GGCGCC	2 cut(s)	332, 488
SspMI	CTAG	1 cut(s)	882
StyD4I	CCNGG	5 cut(s)	310, 370, 396, 899, 932
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	123, 304, 544, 596, 638
TaiI	ACGT	4 cut(s)	258, 582, 606, 923
TaqI	TCGA	3 cut(s)	127, 444, 551
TauI	GCSGC	6 cut(s)	338, 417, 486, 489, 510, 513
TfiI	GAWTC	1 cut(s)	707
TscAI	CASTG	2 cut(s)	126, 296
TseFI	GTSAC	4 cut(s)	469, 523, 638, 700
TseI	GCWGC	3 cut(s)	245, 435, 774
Tsp45I	GTSAC	4 cut(s)	469, 523, 638, 700
TspGWI	ACGGA	2 cut(s)	474, 719
TspRI	CASTG	2 cut(s)	126, 296
VneI	GTGCAC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	408
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	551
XspI	CTAG	1 cut(s)	882
ZraI	GACGTC	1 cut(s)	580
Zsp2I	ATGCAT	2 cut(s)	44, 48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.