Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Forward (+)

28180057 .. 28181246

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGAATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAGCGGCATTGCTGTTTCCGCCGCCACCGTCTTCACTTTACAGAACAGTTGTCCTTACACCGTTTGGCCTGGAATTCTCTCCGGCAACGACAACACCCTCGGCGACGGCGGATTTCCCTTAACACCAGGCGCTTCCGTACAGCTCACGGCTCCTGCAGGATGGTCAGGACGGTTCTGGGCTCGTACCGGCTGCAACTTCGACGCCTCCGGCCACGGTAACTGCGGCACCGGAGACTGCGGCGGTGTTCTTAAATGTAACGGCGGCGGAGTTCCACCAGTCACTCTGGCTGAATTCACACTTGTAGGCGACGGCGGCAAGGATTTCTACGACGTGAGTCTCGTCGACGGTTACAATGTCGAGATGGGGATTAAACCTCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGCGTCGCCGACGTCAACGCGGTTTGCCCTAACGAGCTTCGGCTCATGGATCCACATACAGGAATCATCGCGGCGTGTAAAAGCGCTTGTGCGGCGTTTAATTCTGAGGAGTTCTGTTGTACCGGTGCTCACGCGACGCCGCAAACTTGTTCTCCGACGCATTACTCGGCGATGTTTAAAAGCGCTTGCCCTGGTGCTTACAGTTACGCCTACGACGACGCCACGAGCACCTTCACTTGTACCGGCTCTAACTACTTGATCTCTTTCTGCCCCACCCGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

246

Amino Acids

25.44

Weight (kDa)

4.83

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	31 - 243	2.6e-83	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	3 cut(s)	476, 527, 590
AclWI	GGATC	2 cut(s)	500, 513
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	120, 338
AcyI	GRCGYC	4 cut(s)	249, 468, 593, 675
AfaI	GTAC	4 cut(s)	186, 232, 577, 697
AfeI	AGCGCT	2 cut(s)	541, 640
AfiI	CCNNNNNNNGG	2 cut(s)	428, 515
AgeI	ACCGGT	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	3 cut(s)	115, 172, 646
AluBI	AGCT	2 cut(s)	190, 493
AluI	AGCT	2 cut(s)	190, 493
Alw21I	GWGCWC	2 cut(s)	586, 686
Alw26I	GTCTC	2 cut(s)	273, 389
AlwI	GGATC	2 cut(s)	500, 513
Aor51HI	AGCGCT	2 cut(s)	541, 640
AoxI	GGCC	2 cut(s)	113, 256
ApeKI	GCWGC	2 cut(s)	237, 456
ApoI	RAATTY	2 cut(s)	120, 338
AsiGI	ACCGGT	1 cut(s)	578
AspLEI	GCGC	3 cut(s)	179, 542, 641
AsuC2I	CCSGG	1 cut(s)	733
AsuHPI	GGTGA	1 cut(s)	449
BamHI	GGATCC	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	679
BbsI	GAAGAC	2 cut(s)	31, 70
Bbv12I	GWGCWC	2 cut(s)	586, 686
BbvI	GCAGC	2 cut(s)	224, 443
BccI	CCATC	2 cut(s)	201, 403
BceAI	ACGGC	4 cut(s)	169, 210, 322, 373
BciT130I	CCWGG	3 cut(s)	117, 174, 648
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	273, 389
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	3 cut(s)	180, 543, 642
Bme1390I	CCNGG	4 cut(s)	117, 174, 648, 733
BmgBI	CACGTC	1 cut(s)	379
BmiI	GGNNCC	4 cut(s)	198, 274, 433, 507
BmrFI	CCNGG	4 cut(s)	117, 174, 648, 733
BoxI	GACNNNNGTC	1 cut(s)	381
BpiI	GAAGAC	2 cut(s)	31, 70
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	733
BsaHI	GRCGYC	4 cut(s)	249, 468, 593, 675
BsaJI	CCNNGG	3 cut(s)	145, 259, 646
BsaWI	WCCGGW	3 cut(s)	275, 434, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 515
Bse118I	RCCGGY	4 cut(s)	233, 452, 578, 698
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	117, 174, 648
BseDI	CCNNGG	3 cut(s)	145, 259, 646
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	428, 515
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	2 cut(s)	224, 443
Bsh1236I	CGCG	3 cut(s)	476, 527, 590
BshFI	GGCC	2 cut(s)	115, 258
BshNI	GGYRCC	1 cut(s)	272
BshTI	ACCGGT	1 cut(s)	578
BsiHKAI	GWGCWC	2 cut(s)	586, 686
BsiSI	CCGG	9 cut(s)	129, 234, 255, 276, 435, 453, 579, 699, 733
BslI	CCNNNNNNNGG	2 cut(s)	428, 515
BsmAI	GTCTC	2 cut(s)	273, 389
BsnI	GGCC	2 cut(s)	115, 258
Bsp1286I	GDGCHC	3 cut(s)	229, 586, 686
Bsp143I	GATC	2 cut(s)	505, 714
BspANI	GGCC	2 cut(s)	115, 258
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	3 cut(s)	476, 527, 590
BspLI	GGNNCC	4 cut(s)	198, 274, 433, 507
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	2 cut(s)	500, 513
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	4 cut(s)	233, 452, 578, 698
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	4 cut(s)	233, 452, 578, 698
BssECI	CCNNGG	3 cut(s)	145, 259, 646
BssMI	GATC	2 cut(s)	505, 714
BssNI	GRCGYC	4 cut(s)	249, 468, 593, 675
BssSI	CACGAG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	679
Bst2UI	CCWGG	3 cut(s)	117, 174, 648
Bst4CI	ACNGT	7 cut(s)	76, 95, 109, 219, 263, 395, 659
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	4 cut(s)	249, 468, 593, 675
BstC8I	GCNNGC	2 cut(s)	454, 643
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	212
BstFNI	CGCG	3 cut(s)	476, 527, 590
BstH2I	RGCGCY	3 cut(s)	180, 543, 642
BstHHI	GCGC	3 cut(s)	179, 542, 641
BstKTI	GATC	2 cut(s)	508, 717
BstMAI	GTCTC	2 cut(s)	273, 389
BstMBI	GATC	2 cut(s)	505, 714
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 360, 548
BstNI	CCWGG	3 cut(s)	117, 174, 648
BstPAI	GACNNNNGTC	1 cut(s)	381
BstSCI	CCNGG	4 cut(s)	115, 172, 646, 731
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	3 cut(s)	476, 527, 590
BstV1I	GCAGC	2 cut(s)	224, 443
BstV2I	GAAGAC	2 cut(s)	31, 70
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	115, 258
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	2 cut(s)	508, 641
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	454, 643
CfoI	GCGC	3 cut(s)	179, 542, 641
Cfr10I	RCCGGY	4 cut(s)	233, 452, 578, 698
CseI	GACGC	5 cut(s)	257, 448, 601, 622, 683
Csp6I	GTAC	4 cut(s)	185, 231, 576, 696
CspAI	ACCGGT	1 cut(s)	578
CviAII	CATG	1 cut(s)	502
CviQI	GTAC	4 cut(s)	185, 231, 576, 696
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	2 cut(s)	507, 716
DpnII	GATC	2 cut(s)	505, 714
DraI	TTTAAA	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	3 cut(s)	55, 171, 327
Eco24I	GRGCYC	1 cut(s)	229
Eco47III	AGCGCT	2 cut(s)	541, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoRI	GAATTC	2 cut(s)	120, 338
EcoRII	CCWGG	3 cut(s)	115, 172, 646
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	1 cut(s)	505
FaiI	YATR	2 cut(s)	503, 513
FatI	CATG	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	229
GlaI	GCGC	3 cut(s)	178, 541, 640
HaeII	RGCGCY	3 cut(s)	180, 543, 642
HaeIII	GGCC	2 cut(s)	115, 258
HapII	CCGG	9 cut(s)	129, 234, 255, 276, 435, 453, 579, 699, 733
HgaI	GACGC	5 cut(s)	257, 448, 601, 622, 683
HhaI	GCGC	3 cut(s)	179, 542, 641
Hin1I	GRCGYC	4 cut(s)	249, 468, 593, 675
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	3 cut(s)	177, 540, 639
HinP1I	GCGC	3 cut(s)	177, 540, 639
HincII	GTYRAC	2 cut(s)	391, 472
HindII	GTYRAC	2 cut(s)	391, 472
HinfI	GANTC	2 cut(s)	382, 519
HpaII	CCGG	9 cut(s)	129, 234, 255, 276, 435, 453, 579, 699, 733
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	391, 472
Hpy188I	TCNGA	2 cut(s)	562, 612
Hpy188III	TCNNGA	2 cut(s)	213, 406
Hpy8I	GTNNAC	2 cut(s)	391, 472
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	7 cut(s)	76, 95, 109, 219, 263, 395, 659
HpyCH4IV	ACGT	2 cut(s)	378, 468
HpyCH4V	TGCA	2 cut(s)	203, 240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 360, 548
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	2 cut(s)	378, 468
Hsp92I	GRCGYC	4 cut(s)	249, 468, 593, 675
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	3 cut(s)	177, 540, 639
KroI	GCCGGC	1 cut(s)	452
KroNI	GCCGGC	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	505, 714
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	224, 443
MaeII	ACGT	2 cut(s)	378, 468
MaeIII	GTNAC	5 cut(s)	263, 302, 325, 395, 659
MalI	GATC	2 cut(s)	507, 716
MboI	GATC	2 cut(s)	505, 714
MboII	GAAGA	3 cut(s)	22, 31, 70
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	3 cut(s)	229, 586, 686
MluCI	AATT	4 cut(s)	7, 120, 338, 556
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	635
MnlI	CCTC	5 cut(s)	155, 262, 422, 432, 556
MroNI	GCCGGC	1 cut(s)	452
MseI	TTAA	5 cut(s)	167, 297, 417, 555, 633
MspI	CCGG	9 cut(s)	129, 234, 255, 276, 435, 453, 579, 699, 733
MspR9I	CCNGG	4 cut(s)	117, 174, 648, 733
MvaI	CCWGG	3 cut(s)	117, 174, 648
MvnI	CGCG	3 cut(s)	476, 527, 590
MwoI	GCNNNNNNNGC	3 cut(s)	65, 360, 548
NaeI	GCCGGC	1 cut(s)	454
NciI	CCSGG	1 cut(s)	733
NdeII	GATC	2 cut(s)	505, 714
NgoMIV	GCCGGC	1 cut(s)	452
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	4 cut(s)	198, 274, 433, 507
NmeAIII	GCCGAG	2 cut(s)	126, 602
NmuCI	GTSAC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	3 cut(s)	384, 456, 669
PdiI	GCCGGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	519
PinAI	ACCGGT	1 cut(s)	578
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PshAI	GACNNNNGTC	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	115, 172, 646
PspGI	CCWGG	3 cut(s)	115, 172, 646
PspN4I	GGNNCC	4 cut(s)	198, 274, 433, 507
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	4 cut(s)	186, 232, 577, 697
RsaNI	GTAC	4 cut(s)	185, 231, 576, 696
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	5 cut(s)	167, 297, 417, 555, 633
Sau3AI	GATC	2 cut(s)	505, 714
SbfI	CCTGCAGG	1 cut(s)	205
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	4 cut(s)	117, 174, 648, 733
SdaI	CCTGCAGG	1 cut(s)	205
SduI	GDGCHC	3 cut(s)	229, 586, 686
SetI	ASST	7 cut(s)	192, 381, 424, 433, 471, 495, 689
SfcI	CTRYAG	1 cut(s)	201
SgrDI	CGTCGACG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	13, 423
SmoI	CTYRAG	2 cut(s)	13, 423
Sse8387I	CCTGCAGG	1 cut(s)	205
Sse9I	AATT	4 cut(s)	7, 120, 338, 556
StyD4I	CCNGG	4 cut(s)	115, 172, 646, 731
TaaI	ACNGT	7 cut(s)	76, 95, 109, 219, 263, 395, 659
TaiI	ACGT	2 cut(s)	381, 471
TaqI	TCGA	3 cut(s)	246, 390, 405
TasI	AATT	4 cut(s)	7, 120, 338, 556
TauI	GCSGC	9 cut(s)	54, 71, 273, 288, 312, 363, 530, 551, 598
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	5 cut(s)	167, 297, 417, 555, 633
Tru9I	TTAA	5 cut(s)	167, 297, 417, 555, 633
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	237, 456
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	172
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	2 cut(s)	120, 338
XmiI	GTMKAC	1 cut(s)	390
ZraI	GACGTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.