Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Forward (+)

28177670 .. 28179022

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCAAATATCTCCAGTATTCACATTCTCTTCCTCGTGTTCATCACAAGCGGCATTGCTGTTATGGCCACAGACTTCACTCTAAGGAACAATTGCCCTACCACCGTCTGGGCCGGAACTCTCGCCGGTCAAGGACCCAAGCTCGGCGATGGAGGATTTGAATTGACTCCAGGTGCTTCCCGACAGCTCACGGCTCCTGCAGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGACGCCTCCGGAAACGGTAGATGTGTAACCGGAGACTGTGGCGGTCTAAGATGTAACGGCGGCGGAGTTCCTCCCGTCACTCTGGCTGAATTCACTCTAGTAGGCGATGGCGGCAAAGATTTCTACGATGTGAGCCTCGTAGATGGTTACAATGTCAAGCTGGGGATAAGACCATCCGGAGGATCGGGAGATTGCAAATACGCAGGCTGTGTCTCTGACCTCAACGCGGCTTGCCCCGACATGCTTAAGGTCATGGATCAGAACAATGTCGTGGCCTGCAAGAGTGCCTGTGAGAGGTTTAATACGGATCAATATTGCTGCCGTGGAGCTAACGATAAGCCGGAAACTTGTCCTCCCACGGACTACTCGAGGATTTTCAAGAACGCTTGCCCTGACGCCTATAGCTACGCTTATGACGACGAAACGAGCACCTTCACTTGTACCGGAGCTAACTACGAAATCACTTTCTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

239

Amino Acids

25.25

Weight (kDa)

4.75

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	30 - 239	1.4e-83	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccII	CGCG	1 cut(s)	470
AccIII	TCCGGA	2 cut(s)	251, 419
AciI	CCGC	6 cut(s)	51, 285, 303, 306, 354, 470
AclWI	GGATC	3 cut(s)	433, 507, 558
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	332
AcyI	GRCGYC	2 cut(s)	246, 639
AfaI	GTAC	2 cut(s)	229, 685
AfiI	CCNNNNNNNGG	6 cut(s)	108, 143, 220, 422, 469, 537
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	161, 622
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	6 cut(s)	142, 187, 403, 572, 648, 692
AluI	AGCT	6 cut(s)	142, 187, 403, 572, 648, 692
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	2 cut(s)	270, 460
AlwI	GGATC	3 cut(s)	433, 507, 558
Ama87I	CYCGRG	1 cut(s)	610
Aor13HI	TCCGGA	2 cut(s)	251, 419
AoxI	GGCC	4 cut(s)	66, 111, 211, 516
ApeKI	GCWGC	2 cut(s)	234, 561
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	111, 134
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	221, 548
BccI	CCATC	5 cut(s)	143, 198, 344, 380, 424
BceAI	ACGGC	3 cut(s)	207, 316, 549
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	270, 460
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	2 cut(s)	198, 643
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	6 cut(s)	52, 235, 304, 355, 471, 562
BlsI	GCNGC	6 cut(s)	53, 236, 305, 356, 472, 563
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	111, 134
BmiI	GGNNCC	2 cut(s)	136, 195
BmrFI	CCNGG	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	246, 639
BsaJI	CCNNGG	2 cut(s)	565, 600
BsaWI	WCCGGW	4 cut(s)	251, 272, 419, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	580, 610
Bsc4I	CCNNNNNNNGG	6 cut(s)	108, 143, 220, 422, 469, 537
Bse118I	RCCGGY	2 cut(s)	125, 213
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	54
BseAI	TCCGGA	2 cut(s)	251, 419
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	565, 600
BseGI	GGATG	2 cut(s)	209, 416
BseLI	CCNNNNNNNGG	6 cut(s)	108, 143, 220, 422, 469, 537
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	221, 548
BseYI	CCCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	4 cut(s)	68, 113, 213, 518
BsiHKAI	GWGCWC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	8 cut(s)	114, 126, 214, 252, 273, 420, 584, 687
BslI	CCNNNNNNNGG	6 cut(s)	108, 143, 220, 422, 469, 537
BsmAI	GTCTC	2 cut(s)	270, 460
BsnI	GGCC	4 cut(s)	68, 113, 213, 518
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	226, 674
Bsp13I	TCCGGA	2 cut(s)	251, 419
Bsp143I	GATC	3 cut(s)	425, 499, 550
BspACI	CCGC	6 cut(s)	51, 285, 303, 306, 354, 470
BspANI	GGCC	4 cut(s)	68, 113, 213, 518
BspEI	TCCGGA	2 cut(s)	251, 419
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	136, 195
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	3 cut(s)	433, 507, 558
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	125, 213
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	2 cut(s)	125, 213
BssECI	CCNNGG	2 cut(s)	565, 600
BssMI	GATC	3 cut(s)	425, 499, 550
BssNI	GRCGYC	2 cut(s)	246, 639
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	106, 260, 281
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	2 cut(s)	246, 639
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	4 cut(s)	448, 475, 520, 631
BstDEI	CTNAG	2 cut(s)	83, 290
BstDSI	CCRYGG	2 cut(s)	565, 600
BstENI	CCTNNNNNAGG	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	209, 416
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	3 cut(s)	428, 502, 553
BstMAI	GTCTC	2 cut(s)	270, 460
BstMBI	GATC	3 cut(s)	425, 499, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 354
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	2 cut(s)	198, 643
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	221, 548
BsuRI	GGCC	4 cut(s)	68, 113, 213, 518
BtgI	CCRYGG	2 cut(s)	565, 600
BtgZI	GCGATG	2 cut(s)	162, 363
BtsCI	GGATG	2 cut(s)	209, 416
Cac8I	GCNNGC	4 cut(s)	448, 475, 520, 631
Cfr10I	RCCGGY	2 cut(s)	125, 213
Cfr13I	GGNCC	2 cut(s)	111, 134
CseI	GACGC	2 cut(s)	254, 647
Csp6I	GTAC	2 cut(s)	228, 684
CviAII	CATG	2 cut(s)	484, 496
CviQI	GTAC	2 cut(s)	228, 684
DdeI	CTNAG	2 cut(s)	83, 290
DpnI	GATC	3 cut(s)	427, 501, 552
DpnII	GATC	3 cut(s)	425, 499, 550
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	610
EcoNI	CCTNNNNNAGG	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	2 cut(s)	487, 499
FaiI	YATR	5 cut(s)	65, 485, 497, 645, 657
FatI	CATG	2 cut(s)	483, 495
Fnu4HI	GCNGC	6 cut(s)	52, 235, 304, 355, 471, 562
FokI	GGATG	2 cut(s)	216, 403
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	6 cut(s)	52, 235, 304, 355, 471, 562
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	6 cut(s)	52, 235, 304, 355, 471, 562
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	68, 113, 213, 518
HapII	CCGG	8 cut(s)	114, 126, 214, 252, 273, 420, 584, 687
HgaI	GACGC	2 cut(s)	254, 647
Hin1I	GRCGYC	2 cut(s)	246, 639
Hin1II	CATG	2 cut(s)	487, 499
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	8 cut(s)	114, 126, 214, 252, 273, 420, 584, 687
Hpy188I	TCNGA	2 cut(s)	460, 504
Hpy188III	TCNNGA	5 cut(s)	180, 252, 420, 429, 622
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	3 cut(s)	106, 260, 281
HpyCH4V	TGCA	4 cut(s)	200, 237, 438, 522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 354
HpyF3I	CTNAG	2 cut(s)	83, 290
Hsp92I	GRCGYC	2 cut(s)	246, 639
Hsp92II	CATG	2 cut(s)	487, 499
Kpn2I	TCCGGA	2 cut(s)	251, 419
Kzo9I	GATC	3 cut(s)	425, 499, 550
LmnI	GCTCC	3 cut(s)	199, 569, 689
Lsp1109I	GCAGC	2 cut(s)	221, 548
MaeI	CTAG	1 cut(s)	341
MaeIII	GTNAC	4 cut(s)	268, 296, 319, 389
MalI	GATC	3 cut(s)	427, 501, 552
MboI	GATC	3 cut(s)	425, 499, 550
MboII	GAAGA	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	226, 674
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	3 cut(s)	91, 161, 332
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	160
Mox20I	TGGCCA	1 cut(s)	68
MroI	TCCGGA	2 cut(s)	251, 419
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	3 cut(s)	489, 543, 718
Msp20I	TGGCCA	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	8 cut(s)	114, 126, 214, 252, 273, 420, 584, 687
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	65, 354
NdeII	GATC	3 cut(s)	425, 499, 550
NlaIII	CATG	2 cut(s)	487, 499
NlaIV	GGNNCC	2 cut(s)	136, 195
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	2 cut(s)	608, 657
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	6 cut(s)	53, 236, 305, 356, 472, 563
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	136, 195
PspPI	GGNCC	2 cut(s)	111, 134
PspPPI	RGGWCCY	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	610
PstI	CTGCAG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	229, 685
RsaNI	GTAC	2 cut(s)	228, 684
SaqAI	TTAA	3 cut(s)	489, 543, 718
SatI	GCNGC	6 cut(s)	52, 235, 304, 355, 471, 562
Sau3AI	GATC	3 cut(s)	425, 499, 550
Sau96I	GGNCC	2 cut(s)	111, 134
SbfI	CCTGCAGG	1 cut(s)	202
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	171
SdaI	CCTGCAGG	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	226, 674
SfcI	CTRYAG	2 cut(s)	198, 643
Sfr274I	CTCGAG	1 cut(s)	610
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	610
SmlI	CTYRAG	2 cut(s)	488, 610
SmoI	CTYRAG	2 cut(s)	488, 610
Sse8387I	CCTGCAGG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	91, 161, 332
SsiI	CCGC	6 cut(s)	51, 285, 303, 306, 354, 470
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	106, 260, 281
TaqI	TCGA	1 cut(s)	611
TasI	AATT	3 cut(s)	91, 161, 332
TauI	GCSGC	4 cut(s)	54, 306, 357, 473
Tru1I	TTAA	3 cut(s)	489, 543, 718
Tru9I	TTAA	3 cut(s)	489, 543, 718
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	2 cut(s)	234, 561
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	563, 617
Van91I	CCANNNNNTGG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	535
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	610
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.