Rorug06G0296100

Pathogenesis-related protein 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
44876214 .. 44876799
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0296100.1

Sequence Viewer

Length: 402 bp
ATGGCTAGCAGACTTTGGAACAGCAAGACTATTGAGCTCAGATTCCTCAAACTGGACTGCTTTAGCGGGGTCTTATGGCTACATGGCTCCAGCTTTGGAGTGGTGGCATTAGAAATTATGATGGGAAGGCATCCAGGGGAGCTACTGACTTCTCTATCGGAAAATGGAGATATGCTTTTGAAGGATTTGCTAGACCAAAGACTTCGGTCTCCTTCAAGTCAATTAGCAGTGCGAGTGGTTTCCTTGTTAACAATGGCCTTGGCCTGCACCAGCACTAATCCGGATTCACGACCAACCATGCATTTTGTGGCAAAAGAACTGTCATCAGCCAGGACCCGGAGTTGCCTTTCTGAGCCGTTTAGTACGGTAACCATCAATAAATTGGCAAATTTTCATATCTAG

Protein Analysis

133

Amino Acids

14.75

Weight (kDa)

9.02

Isoelectric Point (pI)

64.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015074)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca FvH4_2g40300
malus_domestica MD08G1036400.v1.1
prunus_persica Prupe.1G383700_v2.0.a1
pyrus_communis pycom08g02910
rosa_chinensis RchiOBHm_Chr6g0300441
rosa_laevigata RLG00000011337
rosa_multiflora Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii Rroxscaffold_7G00167780
rosa_rugosa Rorug06G0296100
rosa_samantha Rh6DG409100
rosa_wichuraiana Rw6G035760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 52, 336
AgsI TTSAA 2 cut(s) 181, 216
AjnI CCWGG 2 cut(s) 133, 329
AluBI AGCT 3 cut(s) 37, 93, 142
AluI AGCT 3 cut(s) 37, 93, 142
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 255, 261
ApoI RAATTY 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspS9I GGNCC 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 2 cut(s) 115, 380
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 135, 331
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 3 cut(s) 6, 191, 400
Bme1390I CCNGG 3 cut(s) 135, 331, 337
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 88, 335
BmrFI CCNGG 3 cut(s) 135, 331, 337
BmsI GCATC 1 cut(s) 139
BmtI GCTAGC 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 73
BpuMI CCSGG 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 134, 258
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 336
Bse1I ACTGG 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 2 cut(s) 135, 331
BseDI CCNNGG 2 cut(s) 134, 258
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 52, 336
BseMII CTCAG 2 cut(s) 52, 342
BseNI ACTGG 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 2 cut(s) 257, 263
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 281, 337
BslI CCNNNNNNNGG 2 cut(s) 52, 336
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 2 cut(s) 257, 263
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 280
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 257, 263
BspCNI CTCAG 2 cut(s) 51, 343
BspEI TCCGGA 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 88, 335
BspOI GCTAGC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 134, 258
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 135, 331
Bst4CI ACNGT 2 cut(s) 321, 367
BstC8I GCNNGC 2 cut(s) 7, 265
BstDEI CTNAG 2 cut(s) 38, 351
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 213
BstNI CCWGG 2 cut(s) 135, 331
BstPAI GACNNNNGTC 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 133, 329, 335
BsuRI GGCC 2 cut(s) 257, 263
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 7, 265
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 83, 298
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 2 cut(s) 38, 351
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 37
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 333
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 133, 329
EcoT14I CCWWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 86, 301
FaiI YATR 6 cut(s) 76, 84, 119, 173, 299, 396
FatI CATG 2 cut(s) 82, 297
FauI CCCGC 1 cut(s) 59
FokI GGATG 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 39
FspBI CTAG 3 cut(s) 6, 191, 400
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 257, 263
HapII CCGG 2 cut(s) 281, 337
Hin1II CATG 2 cut(s) 86, 301
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HinfI GANTC 2 cut(s) 42, 284
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 2 cut(s) 281, 337
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 41, 160, 352
Hpy188III TCNNGA 2 cut(s) 281, 288
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 3 cut(s) 120, 175, 222
HpyCH4III ACNGT 2 cut(s) 321, 367
HpyCH4V TGCA 2 cut(s) 267, 301
HpyF3I CTNAG 2 cut(s) 38, 351
Hsp92II CATG 2 cut(s) 86, 301
Kpn2I TCCGGA 1 cut(s) 280
KspAI GTTAAC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 92, 139
LweI GCATC 1 cut(s) 139
MaeI CTAG 3 cut(s) 6, 191, 400
MaeIII GTNAC 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 4 cut(s) 114, 221, 380, 388
MnlI CCTC 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 303
MroI TCCGGA 1 cut(s) 280
MseI TTAA 1 cut(s) 248
MspI CCGG 2 cut(s) 281, 337
MspR9I CCNGG 3 cut(s) 135, 331, 337
MvaI CCWGG 2 cut(s) 135, 331
NciI CCSGG 1 cut(s) 337
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 86, 301
NlaIV GGNNCC 2 cut(s) 88, 335
NsiI ATGCAT 1 cut(s) 303
PfeI GAWTC 2 cut(s) 42, 284
PpuMI RGGWCCY 1 cut(s) 333
PshAI GACNNNNGTC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 133, 329
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 2 cut(s) 133, 329
PspN4I GGNNCC 2 cut(s) 88, 335
PspPI GGNCC 1 cut(s) 333
PspPPI RGGWCCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 333
ScrFI CCNGG 3 cut(s) 135, 331, 337
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 39, 95, 144
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 333
Sse9I AATT 4 cut(s) 114, 221, 380, 388
SsiI CCGC 1 cut(s) 66
SspMI CTAG 3 cut(s) 6, 191, 400
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 3 cut(s) 133, 329, 335
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 321, 367
TaqII GACCGA 1 cut(s) 195
TasI AATT 4 cut(s) 114, 221, 380, 388
TfiI GAWTC 2 cut(s) 42, 284
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 3 cut(s) 97, 304, 379
XspI CTAG 3 cut(s) 6, 191, 400
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.