Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Forward (+)

60324172 .. 60325173

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCATCCAACTATAAATACCTACCAAATTAATCTCCATCTTCATTCACCAAATCCAACATCAACGATTAACTTCTTCCATCCACAACTTTTCTCTCTAATGGCAATCACCATGACCTCAAACAAGCTCAATCTCTATCTTCTCCCTTTGATCATTATTGCATCATTAGCTACAGCAAACCTAGTTTCCGCAACCGTTTTTACGCTGCAAAACCGATGCCCCTACACAGTCTGGCCCGGCACACTCTCCGGAAACGGCGCCGCAGTTCTCGGCGAAGGCGGTTTCGCCATGTTCCCCGGTGCATTAGTCCAGCTCACAGCCCCGGCCGGCTGGTCCGGCCGCTTCTGGGCCAGAACCGGCTGCAACTTCGACGAAGCCGGTAACGGAAACTGCCTCACCGGAGACTGCGGCTTGCTAAAATGCACCGGCGGCGGCGCACCTCCCGTCACCTTGGCTGAGTTCACCATCGGGTCGGGCGTAACCGACAAGGACTTCTATGACGTCAGCCTCGTCGACGGTTACAACGTCGGCATGGGGCTGAGGGCCACCGGAGGAGACGGCGACTGCCAGTACTCGGGGTGCGTGACGGACTTGAACGCCAACTGCCCGCCCGAGTTGCGGGTCACGGATTCGGGTTCGGGTGTTGTGGTGGCTTGTAAGAGCGCGTGCGAGGCGTTCAACTCGCCGGAGTTTTGCTGCACCGGCGACCACGCCACCCCGCAGACTTGCTCCCCGACTCAGTACTCCGCCATGTTCAAGAGTGCGTGTCCCGCGGCGTATAGCTACGCTTATGATGATGCTTCAAGCACCTGTACCTGTACCGGGTCGGATTACTTGATCACATTTTGCCCCACCGGGTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

288

Amino Acids

30.08

Weight (kDa)

4.65

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	71 - 284	2.8e-79	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	2 cut(s)	665, 773
AccIII	TCCGGA	1 cut(s)	248
AcoI	YGGCCR	2 cut(s)	324, 337
AcyI	GRCGYC	2 cut(s)	258, 501
AfaI	GTAC	4 cut(s)	572, 743, 814, 820
AfiI	CCNNNNNNNGG	4 cut(s)	346, 574, 618, 822
AgsI	TTSAA	4 cut(s)	595, 679, 757, 804
AluBI	AGCT	4 cut(s)	127, 170, 313, 783
AluI	AGCT	4 cut(s)	127, 170, 313, 783
Alw26I	GTCTC	2 cut(s)	396, 549
Ama87I	CYCGRG	2 cut(s)	574, 611
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	5 cut(s)	233, 324, 337, 348, 543
ApeKI	GCWGC	3 cut(s)	205, 360, 696
AseI	ATTAAT	1 cut(s)	30
AspLEI	GCGC	3 cut(s)	260, 437, 665
AspS9I	GGNCC	4 cut(s)	234, 333, 348, 543
AsuC2I	CCSGG	5 cut(s)	237, 297, 323, 823, 856
AsuHPI	GGTGA	5 cut(s)	39, 100, 388, 439, 454
AvaI	CYCGRG	2 cut(s)	574, 611
AvaII	GGWCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	192, 347, 683
BccI	CCATC	3 cut(s)	45, 87, 473
BceAI	ACGGC	2 cut(s)	271, 574
BclI	TGATCA	2 cut(s)	150, 837
BcnI	CCSGG	5 cut(s)	237, 297, 323, 823, 856
BcoDI	GTCTC	2 cut(s)	396, 549
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	261
BisI	GCNGC	9 cut(s)	206, 261, 340, 361, 409, 430, 433, 697, 774
BlsI	GCNGC	9 cut(s)	207, 262, 341, 362, 410, 431, 434, 698, 775
BmcAI	AGTACT	2 cut(s)	572, 743
Bme1390I	CCNGG	5 cut(s)	237, 297, 323, 823, 856
Bme18I	GGWCC	1 cut(s)	333
BmeT110I	CYCGRG	2 cut(s)	574, 611
BmgT120I	GGNCC	4 cut(s)	234, 333, 348, 543
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	5 cut(s)	237, 297, 323, 823, 856
BmsI	GCATC	4 cut(s)	13, 170, 206, 787
Bpu10I	CCTNAGC	1 cut(s)	539
BpuMI	CCSGG	5 cut(s)	237, 297, 323, 823, 856
BsaHI	GRCGYC	2 cut(s)	258, 501
BsaJI	CCNNGG	4 cut(s)	295, 321, 450, 771
BsaWI	WCCGGW	3 cut(s)	248, 398, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	346, 574, 618, 822
Bse118I	RCCGGY	5 cut(s)	326, 356, 377, 425, 701
Bse1I	ACTGG	1 cut(s)	568
BseAI	TCCGGA	1 cut(s)	248
BseDI	CCNNGG	4 cut(s)	295, 321, 450, 771
BseGI	GGATG	2 cut(s)	4, 79
BseLI	CCNNNNNNNGG	4 cut(s)	346, 574, 618, 822
BseMII	CTCAG	3 cut(s)	447, 530, 752
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	567
BseX3I	CGGCCG	2 cut(s)	324, 337
BseXI	GCAGC	3 cut(s)	192, 347, 683
BsgI	GTGCAG	1 cut(s)	682
Bsh1236I	CGCG	2 cut(s)	665, 773
Bsh1285I	CGRYCG	2 cut(s)	327, 340
BshFI	GGCC	5 cut(s)	235, 326, 339, 350, 545
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	2 cut(s)	327, 340
BsiHKCI	CYCGRG	2 cut(s)	574, 611
BslFI	GGGAC	1 cut(s)	753
BslI	CCNNNNNNNGG	4 cut(s)	346, 574, 618, 822
BsmAI	GTCTC	2 cut(s)	396, 549
BsmBI	CGTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	753
BsnI	GGCC	5 cut(s)	235, 326, 339, 350, 545
BsoBI	CYCGRG	2 cut(s)	574, 611
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	150, 837
BspANI	GGCC	5 cut(s)	235, 326, 339, 350, 545
BspCNI	CTCAG	3 cut(s)	448, 531, 751
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	2 cut(s)	665, 773
BspLI	GGNNCC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	257
BsrFI	RCCGGY	5 cut(s)	326, 356, 377, 425, 701
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	5 cut(s)	326, 356, 377, 425, 701
BssECI	CCNNGG	4 cut(s)	295, 321, 450, 771
BssMI	GATC	2 cut(s)	150, 837
BssNI	GRCGYC	2 cut(s)	258, 501
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	196, 229, 518
BstACI	GRCGYC	2 cut(s)	258, 501
BstC8I	GCNNGC	4 cut(s)	328, 413, 608, 667
BstDEI	CTNAG	3 cut(s)	456, 539, 738
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	2 cut(s)	4, 79
BstFNI	CGCG	2 cut(s)	665, 773
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	3 cut(s)	260, 437, 665
BstKTI	GATC	2 cut(s)	153, 840
BstMAI	GTCTC	2 cut(s)	396, 549
BstMBI	GATC	2 cut(s)	150, 837
BstMCI	CGRYCG	2 cut(s)	327, 340
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 336, 429, 616, 671, 702, 770
BstSCI	CCNGG	5 cut(s)	235, 295, 321, 821, 854
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	2 cut(s)	665, 773
BstV1I	GCAGC	3 cut(s)	192, 347, 683
BstZI	CGGCCG	2 cut(s)	324, 337
BsuRI	GGCC	5 cut(s)	235, 326, 339, 350, 545
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	2 cut(s)	4, 79
Cac8I	GCNNGC	4 cut(s)	328, 413, 608, 667
CfoI	GCGC	3 cut(s)	260, 437, 665
Cfr10I	RCCGGY	5 cut(s)	326, 356, 377, 425, 701
Cfr13I	GGNCC	4 cut(s)	234, 333, 348, 543
Cfr42I	CCGCGG	1 cut(s)	774
Csp6I	GTAC	4 cut(s)	571, 742, 813, 819
CviAII	CATG	4 cut(s)	112, 289, 532, 751
CviQI	GTAC	4 cut(s)	571, 742, 813, 819
DdeI	CTNAG	3 cut(s)	456, 539, 738
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	152, 839
DpnII	GATC	2 cut(s)	150, 837
EaeI	YGGCCR	2 cut(s)	324, 337
EagI	CGGCCG	2 cut(s)	324, 337
EciI	GGCGGA	1 cut(s)	736
EclXI	CGGCCG	2 cut(s)	324, 337
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	333
Eco52I	CGGCCG	2 cut(s)	324, 337
Eco88I	CYCGRG	2 cut(s)	574, 611
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	4 cut(s)	115, 292, 535, 754
FaiI	YATR	8 cut(s)	14, 113, 290, 498, 533, 752, 780, 792
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	4 cut(s)	111, 288, 531, 750
FauI	CCCGC	4 cut(s)	612, 615, 726, 778
FbaI	TGATCA	2 cut(s)	150, 837
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	9 cut(s)	206, 261, 340, 361, 409, 430, 433, 697, 774
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	9 cut(s)	206, 261, 340, 361, 409, 430, 433, 697, 774
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	3 cut(s)	259, 436, 664
GluI	GCNGC	9 cut(s)	206, 261, 340, 361, 409, 430, 433, 697, 774
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	235, 326, 339, 350, 545
HhaI	GCGC	3 cut(s)	260, 437, 665
Hin1I	GRCGYC	2 cut(s)	258, 501
Hin1II	CATG	4 cut(s)	115, 292, 535, 754
Hin6I	GCGC	3 cut(s)	258, 435, 663
HinP1I	GCGC	3 cut(s)	258, 435, 663
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	629, 736
HphI	GGTGA	5 cut(s)	39, 100, 388, 439, 454
Hpy166II	GTNNAC	2 cut(s)	462, 514
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	3 cut(s)	249, 757, 864
Hpy8I	GTNNAC	2 cut(s)	462, 514
Hpy99I	CGWCG	4 cut(s)	374, 515, 518, 530
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	196, 229, 518
HpyCH4IV	ACGT	2 cut(s)	501, 525
HpyCH4V	TGCA	7 cut(s)	4, 161, 208, 302, 363, 423, 699
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 336, 429, 616, 671, 702, 770
HpyF3I	CTNAG	3 cut(s)	456, 539, 738
HpySE526I	ACGT	2 cut(s)	501, 525
Hsp92I	GRCGYC	2 cut(s)	258, 501
Hsp92II	CATG	4 cut(s)	115, 292, 535, 754
HspAI	GCGC	3 cut(s)	258, 435, 663
KasI	GGCGCC	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Ksp22I	TGATCA	2 cut(s)	150, 837
KspI	CCGCGG	1 cut(s)	774
Kzo9I	GATC	2 cut(s)	150, 837
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	3 cut(s)	192, 347, 683
LweI	GCATC	4 cut(s)	13, 170, 206, 787
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	2 cut(s)	501, 525
MaeIII	GTNAC	6 cut(s)	380, 445, 478, 518, 583, 622
MalI	GATC	2 cut(s)	152, 839
MboI	GATC	2 cut(s)	150, 837
MboII	GAAGA	3 cut(s)	32, 67, 131
MluCI	AATT	1 cut(s)	27
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	730
MmeI	TCCRAC	3 cut(s)	32, 80, 807
MnlI	CCTC	7 cut(s)	127, 404, 450, 518, 534, 545, 664
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	248
MroNI	GCCGGC	1 cut(s)	326
MseI	TTAA	2 cut(s)	30, 69
MspA1I	CMGCKG	1 cut(s)	773
MspR9I	CCNGG	5 cut(s)	237, 297, 323, 823, 856
MvnI	CGCG	2 cut(s)	665, 773
MwoI	GCNNNNNNNGC	7 cut(s)	167, 336, 429, 616, 671, 702, 770
NaeI	GCCGGC	1 cut(s)	328
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	5 cut(s)	237, 297, 323, 823, 856
NdeII	GATC	2 cut(s)	150, 837
NgoMIV	GCCGGC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	115, 292, 535, 754
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	3 cut(s)	445, 583, 622
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	3 cut(s)	474, 507, 522
PdiI	GCCGGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	9 cut(s)	207, 262, 341, 362, 410, 431, 434, 698, 775
PleI	GAGTC	1 cut(s)	730
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	4 cut(s)	234, 333, 348, 543
RsaI	GTAC	4 cut(s)	572, 743, 814, 820
RsaNI	GTAC	4 cut(s)	571, 742, 813, 819
SacII	CCGCGG	1 cut(s)	774
SalI	GTCGAC	1 cut(s)	512
SaqAI	TTAA	2 cut(s)	30, 69
SatI	GCNGC	9 cut(s)	206, 261, 340, 361, 409, 430, 433, 697, 774
Sau3AI	GATC	2 cut(s)	150, 837
Sau96I	GGNCC	4 cut(s)	234, 333, 348, 543
ScaI	AGTACT	2 cut(s)	572, 743
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	5 cut(s)	237, 297, 323, 823, 856
SfaNI	GCATC	4 cut(s)	13, 170, 206, 787
SfcI	CTRYAG	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	259
Sfr303I	CCGCGG	1 cut(s)	774
SgrAI	CRCCGGYG	2 cut(s)	425, 701
SgrBI	CCGCGG	1 cut(s)	774
SgrDI	CGTCGACG	1 cut(s)	512
SinI	GGWCC	1 cut(s)	333
Sse9I	AATT	1 cut(s)	27
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	5 cut(s)	235, 295, 321, 821, 854
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	196, 229, 518
TaiI	ACGT	2 cut(s)	504, 528
TaqI	TCGA	2 cut(s)	369, 513
TasI	AATT	1 cut(s)	27
TatI	WGTACW	2 cut(s)	570, 741
TauI	GCSGC	6 cut(s)	263, 342, 411, 432, 435, 776
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	30, 69
Tru9I	TTAA	2 cut(s)	30, 69
TseFI	GTSAC	3 cut(s)	445, 583, 622
TseI	GCWGC	3 cut(s)	205, 360, 696
Tsp45I	GTSAC	3 cut(s)	445, 583, 622
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	3 cut(s)	399, 602, 641
VpaK11BI	GGWCC	1 cut(s)	333
VspI	ATTAAT	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	513
XspI	CTAG	1 cut(s)	182
ZraI	GACGTC	1 cut(s)	502
ZrmI	AGTACT	2 cut(s)	572, 743
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.