Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Reverse (-)

8822547 .. 8823779

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCAATCACCATGACCTCAAACAAGCTCAATCTCTATCTTCTTCCTTTGATCATTGCATCATTAGCTACACCAAACCTAGTTTCCGCAACCGTTTTTACGCTGCAAAACCGATGCCCCTACACAGTCTGGCCCGGCACACTCTCCGGAAACGGCGCCGCAGTTCTCGGCGAAGGCGGTTTCGCCATGTTCCCCGGTGCATTAGTCCAGCTCACAGCCCCGGCCGGCTGGTCCGGCCGCGTCTGGGCCAGAACCGGCTGCAACTTCGACGAAGCCGGTAACGGAAACTGCCTCACCGGAGACTGCGGCTTGCTAAAATGCACCGGCGGCGGCGCACCTCCCGTCACCTTGGCTGAGTTCACCATCGGGTCGAGCGTAACCGACAAGGACTTCTATGACGTCAGCCTCGTCGACGGTTACAACGTCGGCATGGGGCTGAGGGCCACCGGAGGAGACGGCGACTGCCAGTACGCGGGGTGCGTGACGGACTTGAACGCCAACTGCCCGCCCGAGTTGCGGGTCACGGATTCGGGTTCGGGTGTTGTGGTGGCTTGTAAGAGCGCGTGCGAGGCGTTCAACGCGCCTGAGTTTTGCTGCACCGGCGACCACGCCACCCCGCAGACTTGCTCTCCGACTCAGTACTCTGCCATGTTCAAGAGTGCGTGTCCCACGGCGTATAGCTACGCTTATGATGATGCTTCAAGCACCTGTACATGTACCGGGTCGGATTACTTGATCACATTTTGCCCCACCGGTTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

254

Amino Acids

26.13

Weight (kDa)

4.27

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	37 - 250	1.6e-79	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	4 cut(s)	240, 473, 563, 581
AccIII	TCCGGA	1 cut(s)	146
AcoI	YGGCCR	2 cut(s)	222, 235
AcyI	GRCGYC	2 cut(s)	156, 399
AfaI	GTAC	4 cut(s)	470, 641, 712, 718
AfiI	CCNNNNNNNGG	3 cut(s)	244, 472, 516
AflIII	ACRYGT	1 cut(s)	713
AgeI	ACCGGT	1 cut(s)	752
AgsI	TTSAA	4 cut(s)	493, 577, 655, 702
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	4 cut(s)	28, 68, 211, 681
AluI	AGCT	4 cut(s)	28, 68, 211, 681
Alw26I	GTCTC	2 cut(s)	294, 447
Ama87I	CYCGRG	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	5 cut(s)	131, 222, 235, 246, 441
ApeKI	GCWGC	3 cut(s)	103, 258, 594
AsiGI	ACCGGT	1 cut(s)	752
AspLEI	GCGC	4 cut(s)	158, 335, 563, 583
AspS9I	GGNCC	4 cut(s)	132, 231, 246, 441
AsuC2I	CCSGG	4 cut(s)	135, 195, 221, 721
AsuHPI	GGTGA	3 cut(s)	286, 337, 352
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	90, 245, 581
BccI	CCATC	1 cut(s)	371
BceAI	ACGGC	3 cut(s)	169, 472, 687
BclI	TGATCA	2 cut(s)	51, 735
BcnI	CCSGG	4 cut(s)	135, 195, 221, 721
BcoDI	GTCTC	2 cut(s)	294, 447
BfaI	CTAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	8 cut(s)	104, 159, 238, 259, 307, 328, 331, 595
BlsI	GCNGC	8 cut(s)	105, 160, 239, 260, 308, 329, 332, 596
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	4 cut(s)	135, 195, 221, 721
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	4 cut(s)	132, 231, 246, 441
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	4 cut(s)	135, 195, 221, 721
BmsI	GCATC	3 cut(s)	68, 104, 685
Bpu10I	CCTNAGC	1 cut(s)	437
BpuMI	CCSGG	4 cut(s)	135, 195, 221, 721
BsaHI	GRCGYC	2 cut(s)	156, 399
BsaJI	CCNNGG	4 cut(s)	193, 219, 348, 669
BsaWI	WCCGGW	4 cut(s)	146, 296, 446, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 472, 516
Bse118I	RCCGGY	6 cut(s)	224, 254, 275, 323, 599, 752
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	193, 219, 348, 669
BseLI	CCNNNNNNNGG	3 cut(s)	244, 472, 516
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	4 cut(s)	345, 428, 576, 650
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	465
BseX3I	CGGCCG	2 cut(s)	222, 235
BseXI	GCAGC	3 cut(s)	90, 245, 581
BsgI	GTGCAG	1 cut(s)	580
Bsh1236I	CGCG	4 cut(s)	240, 473, 563, 581
Bsh1285I	CGRYCG	2 cut(s)	225, 238
BshFI	GGCC	5 cut(s)	133, 224, 237, 248, 443
BshNI	GGYRCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	752
BsiEI	CGRYCG	2 cut(s)	225, 238
BsiHKCI	CYCGRG	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	3 cut(s)	244, 472, 516
BsmAI	GTCTC	2 cut(s)	294, 447
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	5 cut(s)	133, 224, 237, 248, 443
BsoBI	CYCGRG	1 cut(s)	509
Bsp13I	TCCGGA	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	710
Bsp143I	GATC	2 cut(s)	51, 735
BspANI	GGCC	5 cut(s)	133, 224, 237, 248, 443
BspCNI	CTCAG	4 cut(s)	346, 429, 577, 649
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	4 cut(s)	240, 473, 563, 581
BspLI	GGNNCC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	6 cut(s)	224, 254, 275, 323, 599, 752
BsrGI	TGTACA	1 cut(s)	710
BsrI	ACTGG	1 cut(s)	466
BssAI	RCCGGY	6 cut(s)	224, 254, 275, 323, 599, 752
BssECI	CCNNGG	4 cut(s)	193, 219, 348, 669
BssMI	GATC	2 cut(s)	51, 735
BssNI	GRCGYC	2 cut(s)	156, 399
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	94, 127, 416
BstACI	GRCGYC	2 cut(s)	156, 399
BstAUI	TGTACA	1 cut(s)	710
BstC8I	GCNNGC	4 cut(s)	226, 311, 506, 565
BstDEI	CTNAG	4 cut(s)	354, 437, 585, 636
BstDSI	CCRYGG	1 cut(s)	669
BstFNI	CGCG	4 cut(s)	240, 473, 563, 581
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	4 cut(s)	158, 335, 563, 583
BstKTI	GATC	2 cut(s)	54, 738
BstMAI	GTCTC	2 cut(s)	294, 447
BstMBI	GATC	2 cut(s)	51, 735
BstMCI	CGRYCG	2 cut(s)	225, 238
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 234, 327, 514, 569, 578, 600
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	4 cut(s)	133, 193, 219, 719
BstUI	CGCG	4 cut(s)	240, 473, 563, 581
BstV1I	GCAGC	3 cut(s)	90, 245, 581
BstZI	CGGCCG	2 cut(s)	222, 235
BsuRI	GGCC	5 cut(s)	133, 224, 237, 248, 443
BtgI	CCRYGG	1 cut(s)	669
Cac8I	GCNNGC	4 cut(s)	226, 311, 506, 565
CfoI	GCGC	4 cut(s)	158, 335, 563, 583
Cfr10I	RCCGGY	6 cut(s)	224, 254, 275, 323, 599, 752
Cfr13I	GGNCC	4 cut(s)	132, 231, 246, 441
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	469, 640, 711, 717
CspAI	ACCGGT	1 cut(s)	752
CviAII	CATG	5 cut(s)	13, 187, 430, 649, 714
CviQI	GTAC	4 cut(s)	469, 640, 711, 717
DdeI	CTNAG	4 cut(s)	354, 437, 585, 636
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	2 cut(s)	53, 737
DpnII	GATC	2 cut(s)	51, 735
EaeI	YGGCCR	2 cut(s)	222, 235
EagI	CGGCCG	2 cut(s)	222, 235
EclXI	CGGCCG	2 cut(s)	222, 235
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	231
Eco52I	CGGCCG	2 cut(s)	222, 235
Eco88I	CYCGRG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	348
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	5 cut(s)	16, 190, 433, 652, 717
FaiI	YATR	8 cut(s)	14, 188, 396, 431, 650, 678, 690, 715
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	5 cut(s)	12, 186, 429, 648, 713
FauI	CCCGC	4 cut(s)	466, 510, 513, 624
FbaI	TGATCA	2 cut(s)	51, 735
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	8 cut(s)	104, 159, 238, 259, 307, 328, 331, 595
Fsp4HI	GCNGC	8 cut(s)	104, 159, 238, 259, 307, 328, 331, 595
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	4 cut(s)	157, 334, 562, 582
GluI	GCNGC	8 cut(s)	104, 159, 238, 259, 307, 328, 331, 595
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	5 cut(s)	133, 224, 237, 248, 443
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	4 cut(s)	158, 335, 563, 583
Hin1I	GRCGYC	2 cut(s)	156, 399
Hin1II	CATG	5 cut(s)	16, 190, 433, 652, 717
Hin6I	GCGC	4 cut(s)	156, 333, 561, 581
HinP1I	GCGC	4 cut(s)	156, 333, 561, 581
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	527, 634
HphI	GGTGA	3 cut(s)	286, 337, 352
Hpy166II	GTNNAC	2 cut(s)	360, 412
Hpy188I	TCNGA	2 cut(s)	633, 727
Hpy188III	TCNNGA	3 cut(s)	147, 655, 762
Hpy8I	GTNNAC	2 cut(s)	360, 412
Hpy99I	CGWCG	4 cut(s)	272, 413, 416, 428
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	3 cut(s)	94, 127, 416
HpyCH4IV	ACGT	2 cut(s)	399, 423
HpyCH4V	TGCA	6 cut(s)	59, 106, 200, 261, 321, 597
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 234, 327, 514, 569, 578, 600
HpyF3I	CTNAG	4 cut(s)	354, 437, 585, 636
HpySE526I	ACGT	2 cut(s)	399, 423
Hsp92I	GRCGYC	2 cut(s)	156, 399
Hsp92II	CATG	5 cut(s)	16, 190, 433, 652, 717
HspAI	GCGC	4 cut(s)	156, 333, 561, 581
KasI	GGCGCC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	51, 735
Kzo9I	GATC	2 cut(s)	51, 735
Lsp1109I	GCAGC	3 cut(s)	90, 245, 581
LweI	GCATC	3 cut(s)	68, 104, 685
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	399, 423
MaeIII	GTNAC	6 cut(s)	278, 343, 376, 416, 481, 520
MalI	GATC	2 cut(s)	53, 737
MboI	GATC	2 cut(s)	51, 735
MboII	GAAGA	2 cut(s)	32, 35
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	628
MmeI	TCCRAC	2 cut(s)	656, 705
MnlI	CCTC	7 cut(s)	28, 302, 348, 416, 432, 443, 562
MroI	TCCGGA	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	224
MspR9I	CCNGG	4 cut(s)	135, 195, 221, 721
MvnI	CGCG	4 cut(s)	240, 473, 563, 581
MwoI	GCNNNNNNNGC	7 cut(s)	65, 234, 327, 514, 569, 578, 600
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	4 cut(s)	135, 195, 221, 721
NdeII	GATC	2 cut(s)	51, 735
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	5 cut(s)	16, 190, 433, 652, 717
NlaIV	GGNNCC	1 cut(s)	157
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	3 cut(s)	343, 481, 520
NspI	RCATGY	1 cut(s)	717
PciI	ACATGT	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	4 cut(s)	372, 405, 420, 477
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	527
PinAI	ACCGGT	1 cut(s)	752
PkrI	GCNGC	8 cut(s)	105, 160, 239, 260, 308, 329, 332, 596
PleI	GAGTC	1 cut(s)	628
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	628
PscI	ACATGT	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	4 cut(s)	132, 231, 246, 441
RsaI	GTAC	4 cut(s)	470, 641, 712, 718
RsaNI	GTAC	4 cut(s)	469, 640, 711, 717
SalI	GTCGAC	1 cut(s)	410
SatI	GCNGC	8 cut(s)	104, 159, 238, 259, 307, 328, 331, 595
Sau3AI	GATC	2 cut(s)	51, 735
Sau96I	GGNCC	4 cut(s)	132, 231, 246, 441
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	4 cut(s)	135, 195, 221, 721
SfaNI	GCATC	3 cut(s)	68, 104, 685
SfoI	GGCGCC	1 cut(s)	157
SgrAI	CRCCGGYG	2 cut(s)	323, 599
SgrDI	CGTCGACG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	231
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	4 cut(s)	133, 193, 219, 719
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	94, 127, 416
TaiI	ACGT	2 cut(s)	402, 426
TaqI	TCGA	3 cut(s)	267, 371, 411
TatI	WGTACW	2 cut(s)	639, 710
TauI	GCSGC	5 cut(s)	161, 240, 309, 330, 333
TfiI	GAWTC	1 cut(s)	527
TseFI	GTSAC	3 cut(s)	343, 481, 520
TseI	GCWGC	3 cut(s)	103, 258, 594
Tsp45I	GTSAC	3 cut(s)	343, 481, 520
TspDTI	ATGAA	1 cut(s)	747
TspGWI	ACGGA	3 cut(s)	297, 500, 539
VpaK11BI	GGWCC	1 cut(s)	231
XceI	RCATGY	1 cut(s)	717
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	400
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.