Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015074

Physical Location & Seq

Genomic Coordinates Reverse (-)

2678977 .. 2679882

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1036400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGACTAAGCTCTATCTTCTTCTTTCTCTCTTCACGTTAGCTGCAGGTAATGTAGTCCGCGCCACCCAATTCACTCTCCAAAACCGTTGCGGTTACACAGTCTGGCCGGGAACTCTCTCCGGAAACGGCGCTGCAATTCTCGGAGAGGGCGGTTTCGCATTGGCCCCTGGTACTTCTGTCCAGTTCACCGCCCCTCCCGGCTGGTCCGGCCGGTTCTGGGCACGAACTGGCTGCACCTTCGACGACACGGGAAAAGGAAAATGCGTCACTGGCGACTGCGGGTCGCTAAAATGTACCGGTGGTGGCGCGCCTCCAGTGACGTTGGCGGAGTTCACGATCGGGTCCAACCCGGGGGACAAGGACTTTTATGACGTCAGCCTGGTGGACGGTTACAATGTAGGTATGGGGTTGTGGGCCACCGGCGGAACTGGCGACTGCCAGTACGCGGGGTGCGTGGCGGACTTGAATGGCCGCTGCCCGGCGGAGCTGCGGGTGATGGATGCGGGTTCGGGGGCGGTGGTCGCTTGCAGGAGCGCGTGCGCGGCGTTTAACACGCCAGAGTTTTGCTGCACCGGGGAGCACGCGACGCCGCAGACTTGCTCGCCGACGCAGTACTCGGAGATGTTCAAGACGGCGTGCCCCACAGCGTACAGCTACGCCTATGACGACGCTACGAGCACTTGTACCTGTTCCGGGTCGGACTACTTGATCACATTTTGCCCCAGCGGGTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009627 GO:0009628 GO:0009814 GO:0009889 GO:0009962 GO:0010035 GO:0010038 GO:0010224 GO:0019222 GO:0030312 GO:0031537 GO:0031540 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046686 GO:0048046 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080090 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

247

Amino Acids

25.35

Weight (kDa)

4.64

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	29 - 242	4.2e-81	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19320 AT1G75030 AT1G75040 AT1G75050
fragaria_vesca	FvH4_2g40300
malus_domestica	MD08G1036400.v1.1
prunus_persica	Prupe.1G383700_v2.0.a1
pyrus_communis	pycom08g02910
rosa_chinensis	RchiOBHm_Chr6g0300441
rosa_laevigata	RLG00000011337
rosa_multiflora	Rmu_co8384655.1_g000001 Rmu_sc0001670.1_g000005
rosa_roxburghii	Rroxscaffold_7G00167780
rosa_rugosa	Rorug06G0296100
rosa_samantha	Rh6DG409100
rosa_wichuraiana	Rw6G035760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	38
AccII	CGCG	6 cut(s)	63, 311, 449, 539, 545, 587
AccIII	TCCGGA	1 cut(s)	122
AcoI	YGGCCR	3 cut(s)	107, 211, 472
AcyI	GRCGYC	2 cut(s)	375, 590
AfaI	GTAC	6 cut(s)	175, 298, 446, 617, 653, 688
AfiI	CCNNNNNNNGG	5 cut(s)	220, 354, 448, 481, 696
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	469, 631
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	169, 381
AluBI	AGCT	4 cut(s)	13, 44, 490, 657
AluI	AGCT	4 cut(s)	13, 44, 490, 657
Alw21I	GWGCWC	2 cut(s)	585, 683
Ama87I	CYCGRG	1 cut(s)	352
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	5 cut(s)	107, 165, 211, 417, 472
ApeKI	GCWGC	6 cut(s)	44, 134, 234, 477, 490, 570
AscI	GGCGCGCC	1 cut(s)	309
AsiGI	ACCGGT	1 cut(s)	299
AspLEI	GCGC	6 cut(s)	65, 134, 311, 313, 539, 545
AspS9I	GGNCC	4 cut(s)	166, 207, 345, 417
AsuC2I	CCSGG	7 cut(s)	111, 201, 353, 354, 482, 577, 697
AsuHPI	GGTGA	2 cut(s)	181, 508
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	207, 345
BaeGI	GKGCMC	2 cut(s)	226, 644
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
Bbv12I	GWGCWC	2 cut(s)	585, 683
BbvI	GCAGC	6 cut(s)	31, 121, 221, 464, 477, 557
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	2 cut(s)	145, 651
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BciT130I	CCWGG	2 cut(s)	171, 383
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	7 cut(s)	111, 201, 353, 354, 482, 577, 697
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	9 cut(s)	45, 135, 235, 475, 478, 491, 546, 571, 593
BlsI	GCNGC	9 cut(s)	46, 136, 236, 476, 479, 492, 547, 572, 594
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	9 cut(s)	111, 171, 201, 353, 354, 383, 482, 577, 697
Bme18I	GGWCC	2 cut(s)	207, 345
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	4 cut(s)	166, 207, 345, 417
BmiI	GGNNCC	2 cut(s)	168, 346
BmrFI	CCNGG	9 cut(s)	111, 171, 201, 353, 354, 383, 482, 577, 697
BmsI	GCATC	1 cut(s)	493
BpmI	CTGGAG	1 cut(s)	300
BpuMI	CCSGG	7 cut(s)	111, 201, 353, 354, 482, 577, 697
BsaHI	GRCGYC	2 cut(s)	375, 590
BsaJI	CCNNGG	4 cut(s)	169, 352, 353, 576
BsaWI	WCCGGW	2 cut(s)	122, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	5 cut(s)	220, 354, 448, 481, 696
Bse118I	RCCGGY	3 cut(s)	213, 299, 422
Bse1I	ACTGG	6 cut(s)	184, 235, 277, 317, 436, 442
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	171, 383
BseDI	CCNNGG	4 cut(s)	169, 352, 353, 576
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	5 cut(s)	220, 354, 448, 481, 696
BseNI	ACTGG	6 cut(s)	184, 235, 277, 317, 436, 442
BsePI	GCGCGC	1 cut(s)	309
BseSI	GKGCMC	2 cut(s)	226, 644
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	6 cut(s)	31, 121, 221, 464, 477, 557
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	2 cut(s)	220, 556
Bsh1236I	CGCG	6 cut(s)	63, 311, 449, 539, 545, 587
Bsh1285I	CGRYCG	2 cut(s)	214, 342
BshFI	GGCC	5 cut(s)	109, 167, 213, 419, 474
BshTI	ACCGGT	1 cut(s)	299
BsiEI	CGRYCG	2 cut(s)	214, 342
BsiHKAI	GWGCWC	2 cut(s)	585, 683
BsiHKCI	CYCGRG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	5 cut(s)	220, 354, 448, 481, 696
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	109, 167, 213, 419, 474
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	4 cut(s)	226, 585, 644, 683
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	339, 711
BspANI	GGCC	5 cut(s)	109, 167, 213, 419, 474
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	6 cut(s)	63, 311, 449, 539, 545, 587
BspLI	GGNNCC	2 cut(s)	168, 346
BspMAI	CTGCAG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	38
BsrFI	RCCGGY	3 cut(s)	213, 299, 422
BsrI	ACTGG	6 cut(s)	184, 235, 277, 317, 436, 442
BssAI	RCCGGY	3 cut(s)	213, 299, 422
BssECI	CCNNGG	4 cut(s)	169, 352, 353, 576
BssHII	GCGCGC	1 cut(s)	309
BssMI	GATC	2 cut(s)	339, 711
BssNI	GRCGYC	2 cut(s)	375, 590
Bst2UI	CCWGG	2 cut(s)	171, 383
Bst4CI	ACNGT	3 cut(s)	89, 103, 392
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	2 cut(s)	375, 590
BstC8I	GCNNGC	6 cut(s)	311, 529, 541, 585, 605, 640
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	6 cut(s)	63, 311, 449, 539, 545, 587
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	6 cut(s)	65, 134, 311, 313, 539, 545
BstKTI	GATC	2 cut(s)	342, 714
BstMBI	GATC	2 cut(s)	339, 711
BstMCI	CGRYCG	2 cut(s)	214, 342
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 273, 432, 524, 545, 589
BstNI	CCWGG	2 cut(s)	171, 383
BstSCI	CCNGG	9 cut(s)	109, 169, 199, 351, 352, 381, 480, 575, 695
BstSFI	CTRYAG	1 cut(s)	45
BstSLI	GKGCMC	2 cut(s)	226, 644
BstUI	CGCG	6 cut(s)	63, 311, 449, 539, 545, 587
BstV1I	GCAGC	6 cut(s)	31, 121, 221, 464, 477, 557
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	5 cut(s)	109, 167, 213, 419, 474
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	270, 324
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	6 cut(s)	311, 529, 541, 585, 605, 640
CfoI	GCGC	6 cut(s)	65, 134, 311, 313, 539, 545
Cfr10I	RCCGGY	3 cut(s)	213, 299, 422
Cfr13I	GGNCC	4 cut(s)	166, 207, 345, 417
Cfr9I	CCCGGG	1 cut(s)	352
CseI	GACGC	4 cut(s)	256, 598, 619, 680
Csp6I	GTAC	6 cut(s)	174, 297, 445, 616, 652, 687
CspAI	ACCGGT	1 cut(s)	299
CviQI	GTAC	6 cut(s)	174, 297, 445, 616, 652, 687
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	2 cut(s)	341, 713
DpnII	GATC	2 cut(s)	339, 711
DriI	GACNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	3 cut(s)	107, 211, 472
EagI	CGGCCG	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	38
EciI	GGCGGA	4 cut(s)	344, 441, 476, 500
EclXI	CGGCCG	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	207, 345
Eco52I	CGGCCG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	169, 381
FaiI	YATR	4 cut(s)	372, 407, 666, 739
FaqI	GGGAC	1 cut(s)	371
FauI	CCCGC	5 cut(s)	275, 442, 486, 499, 722
FbaI	TGATCA	1 cut(s)	711
Fnu4HI	GCNGC	9 cut(s)	45, 135, 235, 475, 478, 491, 546, 571, 593
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	9 cut(s)	45, 135, 235, 475, 478, 491, 546, 571, 593
GlaI	GCGC	6 cut(s)	64, 133, 310, 312, 538, 544
GluI	GCNGC	9 cut(s)	45, 135, 235, 475, 478, 491, 546, 571, 593
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	5 cut(s)	109, 167, 213, 419, 474
HgaI	GACGC	4 cut(s)	256, 598, 619, 680
HhaI	GCGC	6 cut(s)	65, 134, 311, 313, 539, 545
Hin1I	GRCGYC	2 cut(s)	375, 590
Hin6I	GCGC	6 cut(s)	63, 132, 309, 311, 537, 543
HinP1I	GCGC	6 cut(s)	63, 132, 309, 311, 537, 543
HphI	GGTGA	2 cut(s)	181, 508
Hpy166II	GTNNAC	3 cut(s)	189, 336, 388
Hpy188I	TCNGA	3 cut(s)	146, 622, 703
Hpy188III	TCNNGA	3 cut(s)	123, 337, 631
Hpy8I	GTNNAC	3 cut(s)	189, 336, 388
Hpy99I	CGWCG	4 cut(s)	248, 592, 613, 674
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	89, 103, 392
HpyCH4IV	ACGT	3 cut(s)	38, 323, 375
HpyCH4V	TGCA	5 cut(s)	47, 137, 237, 531, 573
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 273, 432, 524, 545, 589
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	3 cut(s)	38, 323, 375
Hsp92I	GRCGYC	2 cut(s)	375, 590
HspAI	GCGC	6 cut(s)	63, 132, 309, 311, 537, 543
Kpn2I	TCCGGA	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	2 cut(s)	339, 711
LmnI	GCTCC	3 cut(s)	487, 534, 580
Lsp1109I	GCAGC	6 cut(s)	31, 121, 221, 464, 477, 557
LweI	GCATC	1 cut(s)	493
MaeII	ACGT	3 cut(s)	38, 323, 375
MaeIII	GTNAC	4 cut(s)	95, 268, 319, 392
MalI	GATC	2 cut(s)	341, 713
MboI	GATC	2 cut(s)	339, 711
MboII	GAAGA	3 cut(s)	11, 14, 25
MhlI	GDGCHC	4 cut(s)	226, 585, 644, 683
MluCI	AATT	2 cut(s)	71, 138
MmeI	TCCRAC	2 cut(s)	372, 681
MnlI	CCTC	3 cut(s)	142, 207, 324
MroI	TCCGGA	1 cut(s)	122
MseI	TTAA	1 cut(s)	552
MspA1I	CMGCKG	2 cut(s)	477, 729
MspR9I	CCNGG	9 cut(s)	111, 171, 201, 353, 354, 383, 482, 577, 697
MvaI	CCWGG	2 cut(s)	171, 383
MvnI	CGCG	6 cut(s)	63, 311, 449, 539, 545, 587
MwoI	GCNNNNNNNGC	6 cut(s)	210, 273, 432, 524, 545, 589
NciI	CCSGG	7 cut(s)	111, 201, 353, 354, 482, 577, 697
NdeII	GATC	2 cut(s)	339, 711
NlaIV	GGNNCC	2 cut(s)	168, 346
NmuCI	GTSAC	2 cut(s)	268, 319
PalAI	GGCGCGCC	1 cut(s)	309
PauI	GCGCGC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	453, 666
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	9 cut(s)	46, 136, 236, 476, 479, 492, 547, 572, 594
Ple19I	CGATCG	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	169, 381
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	169, 381
PspN4I	GGNNCC	2 cut(s)	168, 346
PspPI	GGNCC	4 cut(s)	166, 207, 345, 417
PstI	CTGCAG	1 cut(s)	49
PteI	GCGCGC	1 cut(s)	309
PvuI	CGATCG	1 cut(s)	342
RsaI	GTAC	6 cut(s)	175, 298, 446, 617, 653, 688
RsaNI	GTAC	6 cut(s)	174, 297, 445, 616, 652, 687
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	9 cut(s)	45, 135, 235, 475, 478, 491, 546, 571, 593
Sau3AI	GATC	2 cut(s)	339, 711
Sau96I	GGNCC	4 cut(s)	166, 207, 345, 417
ScaI	AGTACT	1 cut(s)	617
ScrFI	CCNGG	9 cut(s)	111, 171, 201, 353, 354, 383, 482, 577, 697
SduI	GDGCHC	4 cut(s)	226, 585, 644, 683
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	45
SgrAI	CRCCGGYG	1 cut(s)	422
SgsI	GGCGCGCC	1 cut(s)	309
SinI	GGWCC	2 cut(s)	207, 345
SmaI	CCCGGG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	71, 138
StyD4I	CCNGG	9 cut(s)	109, 169, 199, 351, 352, 381, 480, 575, 695
TaaI	ACNGT	3 cut(s)	89, 103, 392
TaiI	ACGT	3 cut(s)	41, 326, 378
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	71, 138
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	3 cut(s)	477, 548, 595
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	277, 324
TseFI	GTSAC	2 cut(s)	268, 319
TseI	GCWGC	6 cut(s)	44, 134, 234, 477, 490, 570
Tsp45I	GTSAC	2 cut(s)	268, 319
TspMI	CCCGGG	1 cut(s)	352
TspRI	CASTG	2 cut(s)	277, 324
VpaK11BI	GGWCC	2 cut(s)	207, 345
XmaI	CCCGGG	1 cut(s)	352
ZraI	GACGTC	1 cut(s)	376
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.