AT1G19340

Belongs to the MT-A70-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010167
Physical Location & Seq
Forward (+)
6684467 .. 6687116
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19340.1

Sequence Viewer

Length: 1245 bp
ATGGCGAAAACTGATAAGCTAGCTCAATTCCTTGATTCTGGTATCTACGAATCCGACGAATTCAATTGGTTCTTCTTAGACACAGTTCGTATCACCAACCGTTCATATACCCGATTTAAGGTTTCACCTTCTGCTTACTACTCTCGTTTCTTCAATTCGAAGCAACTCAATCAACACTCTAGCGAGTCTAATCCGAAAAAGCGAAAACGGAAGCAGAAAAACTCTAGCTTTCACCTTCCTAGTGTAGGAGAGCAAGCTTCGAATCTTCGTCATCAGGAAGCGAGGCTGTTCTTATCGAAAGCCCATGAATCTTTTCTAAAGGAAATTGAGTTGTTGAGTTTAACGAAAGGTCTAAGTGATGATAATGATGATGATGATTCTAGTTTGTTGAACAAGTGTTGTGACGATGAAGTCTCTTTTATTGAGCTTGGAGGAGTGTGGCAAGCTCCTTTCTATGAGATAACACTGAGTTTTAATCTACATTGCGACAATGAAGGTGAGAGTTGTAATGAACAGAGAGTGTTTCAAGTGTTCAATAACCTAGTAGTGAATGAGATTGGAGAAGAAGTTGAAGCTGAGTTTTCCAACCGGAGATATATAATGCCCAGAAACAGTTGCTTCTACATGTCTGATTTACATCACATCCGAAACCTCGTTCCTGCTAAATCTGAAGAAGGCTACAATCTTATAGTTATTGATCCGCCTTGGGAAAATGCAAGTGCTCATCAGAAATCAAAGTATCCTACTTTACCGAACCAATACTTCTTATCTCTTCCGATCAAGCAGCTTGCTCATGCTGAAGGAGCTCTCGTGGCTTTGTGGGTGACAAATAGAGAGAAATTACTAAGTTTTGTTGAGAAAGAGCTATTCCCTGCGTGGGGAATTAAGTATGTAGCTACAATGTATTGGTTAAAGGTGAAACCGGATGGTACACTGATTTGCGACCTGGACCTGGTCCATCATAAACCTTATGAGTACCTTCTACTAGGCTACCATTTTACCGAACTTGCAGGATCAGAAAAGAGGTCAGATTTTAAACTCTTGGACAAGAACCAGATAATCATGAGCATCCCTGGTGATTTTTCGAGGAAACCCCCAATTGGAGATATACTACTGAAACACACTCCCGGGTCTCAACCTGCTCGGTGCCTTGAGCTATTTGCGAGGGAAATGGCTGCCGGATGGACCTCTTGGGGAAACGAACCGCTTCACTTTCAGGACTCGAGATACTTTTTGAAAGTTTAG

Protein Analysis

414

Amino Acids

47.89

Weight (kDa)

6.08

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MT-A70 PF05063 227 - 401 1e-33 MT-A70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 1147
AccB1I GGYRCC 1 cut(s) 1146
AciI CCGC 2 cut(s) 701, 1205
AclWI GGATC 2 cut(s) 692, 1021
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 690, 819
AfaI GTAC 2 cut(s) 931, 977
AfiI CCNNNNNNNGG 6 cut(s) 118, 245, 877, 878, 952, 1100
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 7 cut(s) 64, 154, 391, 527, 535, 572, 1237
AjnI CCWGG 3 cut(s) 945, 951, 1072
Alw21I GWGCWC 2 cut(s) 724, 808
Alw26I GTCTC 2 cut(s) 418, 1137
AlwI GGATC 2 cut(s) 692, 1021
Ama87I CYCGRG 2 cut(s) 1127, 1222
ApeKI GCWGC 2 cut(s) 784, 1175
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 2 cut(s) 312, 1206
AspS9I GGNCC 3 cut(s) 949, 955, 1185
AsuC2I CCSGG 2 cut(s) 1128, 1129
AsuHPI GGTGA 7 cut(s) 85, 117, 224, 509, 835, 928, 1088
AsuII TTCGAA 2 cut(s) 158, 260
AsuNHI GCTAGC 1 cut(s) 19
AvaI CYCGRG 2 cut(s) 1127, 1222
AvaII GGWCC 3 cut(s) 949, 955, 1185
BanI GGYRCC 1 cut(s) 1146
BanII GRGCYC 1 cut(s) 808
BauI CACGAG 1 cut(s) 809
Bbv12I GWGCWC 2 cut(s) 724, 808
BbvI GCAGC 2 cut(s) 796, 1162
BccI CCATC 3 cut(s) 920, 966, 1176
BciT130I CCWGG 3 cut(s) 947, 953, 1074
BciVI GTATCC 1 cut(s) 750
BcnI CCSGG 2 cut(s) 1128, 1129
BcoDI GTCTC 2 cut(s) 418, 1137
BfaI CTAG 7 cut(s) 20, 180, 225, 240, 381, 542, 986
BfuAI ACCTGC 1 cut(s) 1147
BfuI GTATCC 1 cut(s) 750
BisI GCNGC 2 cut(s) 785, 1176
BlsI GCNGC 2 cut(s) 786, 1177
Bme1390I CCNGG 5 cut(s) 947, 953, 1074, 1128, 1129
Bme18I GGWCC 3 cut(s) 949, 955, 1185
BmeT110I CYCGRG 2 cut(s) 1127, 1222
BmgT120I GGNCC 3 cut(s) 949, 955, 1185
BmiI GGNNCC 1 cut(s) 1148
BmrFI CCNGG 5 cut(s) 947, 953, 1074, 1128, 1129
BmsI GCATC 1 cut(s) 1077
BmtI GCTAGC 1 cut(s) 23
Bpu14I TTCGAA 2 cut(s) 158, 260
BpuEI CTTGAG 1 cut(s) 1172
BpuMI CCSGG 2 cut(s) 1128, 1129
BsaBI GATNNNNATC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 1137
BsaJI CCNNGG 3 cut(s) 704, 1072, 1127
BsaWI WCCGGW 2 cut(s) 588, 922
BsaXI ACNNNNNCTCC 4 cut(s) 552, 582, 795, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 118, 245, 877, 878, 952, 1100
Bse3DI GCAATG 1 cut(s) 481
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 3 cut(s) 947, 953, 1074
BseDI CCNNGG 3 cut(s) 704, 1072, 1127
BseGI GGATG 4 cut(s) 642, 931, 1068, 1187
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 6 cut(s) 118, 245, 877, 878, 952, 1100
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 2 cut(s) 458, 567
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 796, 1162
BshNI GGYRCC 1 cut(s) 1146
BsiHKAI GWGCWC 2 cut(s) 724, 808
BsiHKCI CYCGRG 2 cut(s) 1127, 1222
BsiSI CCGG 4 cut(s) 589, 923, 1128, 1179
BslI CCNNNNNNNGG 6 cut(s) 118, 245, 877, 878, 952, 1100
BsmAI GTCTC 2 cut(s) 418, 1137
Bso31I GGTCTC 1 cut(s) 1137
BsoBI CYCGRG 2 cut(s) 1127, 1222
Bsp119I TTCGAA 2 cut(s) 158, 260
Bsp1286I GDGCHC 2 cut(s) 724, 808
Bsp143I GATC 3 cut(s) 697, 777, 1013
BspACI CCGC 2 cut(s) 701, 1205
BspCNI CTCAG 2 cut(s) 459, 568
BspHI TCATGA 1 cut(s) 1062
BspLI GGNNCC 1 cut(s) 1148
BspMI ACCTGC 1 cut(s) 1147
BspOI GCTAGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 692, 1021
BspT104I TTCGAA 2 cut(s) 158, 260
BspT107I GGYRCC 1 cut(s) 1146
BspTNI GGTCTC 1 cut(s) 1137
BsrDI GCAATG 1 cut(s) 481
BssECI CCNNGG 3 cut(s) 704, 1072, 1127
BssMI GATC 3 cut(s) 697, 777, 1013
BssSI CACGAG 1 cut(s) 809
BssT1I CCWWGG 1 cut(s) 704
Bst2BI CACGAG 1 cut(s) 809
Bst2UI CCWGG 3 cut(s) 947, 953, 1074
Bst4CI ACNGT 3 cut(s) 85, 101, 614
Bst6I CTCTTC 1 cut(s) 777
BstBI TTCGAA 2 cut(s) 158, 260
BstC8I GCNNGC 4 cut(s) 21, 255, 444, 789
BstDEI CTNAG 5 cut(s) 76, 353, 467, 576, 845
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 4 cut(s) 642, 931, 1068, 1187
BstKTI GATC 3 cut(s) 700, 780, 1016
BstMAI GTCTC 2 cut(s) 418, 1137
BstMBI GATC 3 cut(s) 697, 777, 1013
BstMWI GCNNNNNNNGC 2 cut(s) 803, 812
BstNI CCWGG 3 cut(s) 947, 953, 1074
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 5 cut(s) 945, 951, 1072, 1126, 1127
BstV1I GCAGC 2 cut(s) 796, 1162
BsuI GTATCC 1 cut(s) 750
BtsCI GGATG 4 cut(s) 642, 931, 1068, 1187
BtsIMutI CAGTG 2 cut(s) 464, 932
BveI ACCTGC 1 cut(s) 1147
Cac8I GCNNGC 4 cut(s) 21, 255, 444, 789
CciI TCATGA 1 cut(s) 1062
Cfr13I GGNCC 3 cut(s) 949, 955, 1185
Cfr9I CCCGGG 1 cut(s) 1127
CsiI ACCWGGT 1 cut(s) 951
Csp6I GTAC 2 cut(s) 930, 976
CviAII CATG 4 cut(s) 305, 625, 794, 1063
CviQI GTAC 2 cut(s) 930, 976
DdeI CTNAG 5 cut(s) 76, 353, 467, 576, 845
DpnI GATC 3 cut(s) 699, 779, 1015
DpnII GATC 3 cut(s) 697, 777, 1013
DraI TTTAAA 1 cut(s) 1036
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
Eam1104I CTCTTC 1 cut(s) 777
EarI CTCTTC 1 cut(s) 777
EciI GGCGGA 1 cut(s) 690
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 704
Eco24I GRGCYC 1 cut(s) 808
Eco31I GGTCTC 1 cut(s) 1137
Eco47I GGWCC 3 cut(s) 949, 955, 1185
Eco53kI GAGCTC 1 cut(s) 806
Eco57I CTGAAG 2 cut(s) 690, 819
Eco88I CYCGRG 2 cut(s) 1127, 1222
EcoICRI GAGCTC 1 cut(s) 806
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 945, 951, 1072
EcoT14I CCWWGG 1 cut(s) 704
EcoT38I GRGCYC 1 cut(s) 808
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 4 cut(s) 308, 628, 797, 1066
FatI CATG 4 cut(s) 304, 624, 793, 1062
Fnu4HI GCNGC 2 cut(s) 785, 1176
FokI GGATG 4 cut(s) 629, 938, 1055, 1194
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 2 cut(s) 785, 1176
FspBI CTAG 7 cut(s) 20, 180, 225, 240, 381, 542, 986
GluI GCNGC 2 cut(s) 785, 1176
HapII CCGG 4 cut(s) 589, 923, 1128, 1179
Hin1II CATG 4 cut(s) 308, 628, 797, 1066
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 7 cut(s) 35, 50, 185, 262, 308, 377, 1220
HpaII CCGG 4 cut(s) 589, 923, 1128, 1179
HphI GGTGA 7 cut(s) 85, 117, 224, 509, 835, 928, 1088
Hpy166II GTNNAC 1 cut(s) 932
Hpy188I TCNGA 9 cut(s) 55, 195, 631, 647, 670, 729, 777, 1018, 1030
Hpy188III TCNNGA 4 cut(s) 275, 1063, 1217, 1224
Hpy8I GTNNAC 1 cut(s) 932
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 6 cut(s) 138, 245, 488, 668, 794, 989
HpyCH4III ACNGT 3 cut(s) 85, 101, 614
HpyCH4V TGCA 2 cut(s) 716, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 812
HpyF3I CTNAG 5 cut(s) 76, 353, 467, 576, 845
Hsp92II CATG 4 cut(s) 308, 628, 797, 1066
Kzo9I GATC 3 cut(s) 697, 777, 1013
LmnI GCTCC 2 cut(s) 451, 803
Lsp1109I GCAGC 2 cut(s) 796, 1162
LweI GCATC 1 cut(s) 1077
MabI ACCWGGT 1 cut(s) 951
MaeI CTAG 7 cut(s) 20, 180, 225, 240, 381, 542, 986
MaeIII GTNAC 2 cut(s) 401, 823
MalI GATC 3 cut(s) 699, 779, 1015
MboI GATC 3 cut(s) 697, 777, 1013
MboII GAAGA 6 cut(s) 64, 142, 257, 575, 683, 764
MfeI CAATTG 2 cut(s) 64, 1098
MhlI GDGCHC 2 cut(s) 724, 808
MluCI AATT 8 cut(s) 26, 59, 64, 154, 324, 839, 882, 1098
MlyI GAGTC 2 cut(s) 194, 1214
MmeI TCCRAC 2 cut(s) 78, 609
MnlI CCTC 7 cut(s) 276, 425, 662, 1017, 1080, 1158, 1198
MroXI GAANNNNTTC 2 cut(s) 312, 1206
MseI TTAA 6 cut(s) 117, 341, 474, 885, 911, 1035
MspI CCGG 4 cut(s) 589, 923, 1128, 1179
MspR9I CCNGG 5 cut(s) 947, 953, 1074, 1128, 1129
MunI CAATTG 2 cut(s) 64, 1098
MvaI CCWGG 3 cut(s) 947, 953, 1074
MwoI GCNNNNNNNGC 2 cut(s) 803, 812
NciI CCSGG 2 cut(s) 1128, 1129
NdeII GATC 3 cut(s) 697, 777, 1013
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 4 cut(s) 308, 628, 797, 1066
NlaIV GGNNCC 1 cut(s) 1148
NmuCI GTSAC 2 cut(s) 401, 823
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 2 cut(s) 158, 260
PaeR7I CTCGAG 1 cut(s) 1222
PagI TCATGA 1 cut(s) 1062
PciI ACATGT 1 cut(s) 624
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 312, 1206
PfeI GAWTC 5 cut(s) 35, 50, 262, 308, 377
PflFI GACNNNGTC 1 cut(s) 953
PkrI GCNGC 2 cut(s) 786, 1177
PleI GAGTC 2 cut(s) 193, 1214
PpsI GAGTC 2 cut(s) 193, 1214
PscI ACATGT 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 808
Psp6I CCWGG 3 cut(s) 945, 951, 1072
PspGI CCWGG 3 cut(s) 945, 951, 1072
PspN4I GGNNCC 1 cut(s) 1148
PspPI GGNCC 3 cut(s) 949, 955, 1185
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 2 cut(s) 931, 977
RsaNI GTAC 2 cut(s) 930, 976
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 6 cut(s) 117, 341, 474, 885, 911, 1035
SatI GCNGC 2 cut(s) 785, 1176
Sau3AI GATC 3 cut(s) 697, 777, 1013
Sau96I GGNCC 3 cut(s) 949, 955, 1185
SchI GAGTC 2 cut(s) 194, 1214
ScrFI CCNGG 5 cut(s) 947, 953, 1074, 1128, 1129
SduI GDGCHC 2 cut(s) 724, 808
SexAI ACCWGGT 1 cut(s) 951
SfaNI GCATC 1 cut(s) 1077
Sfr274I CTCGAG 1 cut(s) 1222
SfuI TTCGAA 2 cut(s) 158, 260
SinI GGWCC 3 cut(s) 949, 955, 1185
SlaI CTCGAG 1 cut(s) 1222
SmaI CCCGGG 1 cut(s) 1129
SmlI CTYRAG 2 cut(s) 1151, 1222
SmoI CTYRAG 2 cut(s) 1151, 1222
Sse9I AATT 8 cut(s) 26, 59, 64, 154, 324, 839, 882, 1098
SsiI CCGC 2 cut(s) 701, 1205
SspMI CTAG 7 cut(s) 20, 180, 225, 240, 381, 542, 986
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 5 cut(s) 945, 951, 1072, 1126, 1127
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 3 cut(s) 85, 101, 614
TaqI TCGA 5 cut(s) 158, 260, 296, 1085, 1223
TasI AATT 8 cut(s) 26, 59, 64, 154, 324, 839, 882, 1098
TfiI GAWTC 5 cut(s) 35, 50, 262, 308, 377
Tru1I TTAA 6 cut(s) 117, 341, 474, 885, 911, 1035
Tru9I TTAA 6 cut(s) 117, 341, 474, 885, 911, 1035
TscAI CASTG 2 cut(s) 471, 939
TseFI GTSAC 2 cut(s) 401, 823
TseI GCWGC 2 cut(s) 784, 1175
Tsp45I GTSAC 2 cut(s) 401, 823
TspDTI ATGAA 5 cut(s) 93, 321, 423, 507, 525
TspGWI ACGGA 1 cut(s) 223
TspMI CCCGGG 1 cut(s) 1127
TspRI CASTG 2 cut(s) 471, 939
Tth111I GACNNNGTC 1 cut(s) 953
VpaK11BI GGWCC 3 cut(s) 949, 955, 1185
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 1222
XmaI CCCGGG 1 cut(s) 1127
XmnI GAANNNNTTC 2 cut(s) 312, 1206
XspI CTAG 7 cut(s) 20, 180, 225, 240, 381, 542, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.