Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010167

Physical Location & Seq

Genomic Coordinates Forward (+)

60707916 .. 60710673

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG424400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGAGTACTCCAAAACCACCGATAAGCTAACCGAGTTTTTGGACTCCGGGATTTACCGGTTCGAAGATTCCAACGCCGTTTTCATCGACCCGGTTCGCGTGCTCAACCGCTCCTACACCCGGTTTAGGGTTTCACCTTCCGCTTACTACTGTCGCCGATTCGACTCCACTTGCCCACCGGAGCCTAGCGTCGCTTCGAATTCCAGAAAGCGAAAGCGGAAGGAGAAGAAGAAGCCTCGGGCTCTGAACGATAGAGAACAAGTCGCCGATCAACGCCACCAGCAAGTGAGACCTTTCTTACTGAAGGCACATGAATCTTTGATCCGAACAAGTGAGGTGTTAGAGGTTATGAGCAATTTGAGGGGTTGTTTGGGTCCTGAAACTTCCTCTCCAGGTGTTGAACAGTCATTTGTTGAACTCGCACAGGTCTGGCAGGCTCCTCTTTACCAGATTACTCTAAACTTCCATACAAATTACAAACAAGGGGAAGATGGAGGCTCCCTTGCTACGCAAGACTGTGAACAATGTGTTCTCCCTGTGTTTAACAACTTGGTTGTTAATGAGAGCAGTAATGATGTGGAGGCTGAAGTTTTGACCAGTCGATATATTTTGCCTCCGAAGAGTTCCTTCTACATGTCAGATATGGGGCAGATTCACAATCTAATTCCCGCTGAGTCTGATTTTGGCTTCAGTGTTATAGTTGTTGATCCACCATGGGAAAATGGCAGTGCTCGGCAGAAGTCGAGGTACAAAACTTTGCCCAACCGATATTTCTTATCCATTCCGATCAAGCAACTTTGTCACACAGATGGAGCTTTTGTCGCCTTATGGGTAACAAATAGGGAGAAGTTGCGTGATTTTGTTGAGAAAGAGCTGTTTCCTGCTTGGGGAGTCACACATGTTGCTACTTTTTTCTGGTTGAAGGTGAAGGCTGACGGTTCCTTGATTTGTGATTTAGACCTGTTTCATCATAGGCCATATGAGTGCCTTCTTGTGGGCATCTGTCATGGGAAGGTTATGAATTCTAAACAGCTATTGGGATCAGATCATATACCAGATAATCAAATTATATTAAGCGTACCGGGGGATTACTCAAGGAAGCCCCCAATAGGAGGATTGTTACAGGAGCTTGCTCCGAGGCTCAAAGGTGGTCGATCCATTGAACTATTTGCTAGAGAAATGACAACCGGATGGGTTTCTTGGGGGAATGAACCCCTGCATTTTCAAGAATCCAGGAATTTTGTAACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009007 GO:0009008 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0032775 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

MT-A70

Protein Analysis

417

Amino Acids

47.6

Weight (kDa)

7.16

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	230 - 404	9e-35	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19340
fragaria_vesca	FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230
malus_domestica	MD04G1062700.v1.1
prunus_persica	Prupe.1G383100_v2.0.a1 Prupe.1G383100_v2.0.a1
pyrus_communis	pycom04g05610
rosa_chinensis	RchiOBHm_Chr6g0300531
rosa_laevigata	RLG00000011326
rosa_multiflora	Rmu_sc0001476.1_g000020
rosa_roxburghii	Rroxscaffold_7G00167690
rosa_rugosa	Rorug06G0296900 Rorug06G0296900
rosa_samantha	Rh6AG409500 Rh6BG416700 Rh6CG424400 Rh6DG410000
rosa_wichuraiana	Rw6G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	99
AciI	CCGC	4 cut(s)	109, 141, 217, 669
AclWI	GGATC	4 cut(s)	316, 701, 1048, 1149
AcsI	RAATTY	3 cut(s)	199, 1021, 1237
AcuI	CTGAAG	3 cut(s)	323, 606, 673
AfaI	GTAC	3 cut(s)	8, 749, 1080
AfiI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1109, 1112
AflIII	ACRYGT	2 cut(s)	633, 898
AgeI	ACCGGT	1 cut(s)	57
AgsI	TTSAA	5 cut(s)	401, 416, 922, 1163, 1226
AjnI	CCWGG	2 cut(s)	391, 1232
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 755, 787
AluBI	AGCT	5 cut(s)	28, 815, 874, 1033, 1129
AluI	AGCT	5 cut(s)	28, 815, 874, 1033, 1129
Alw21I	GWGCWC	2 cut(s)	105, 733
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	4 cut(s)	316, 701, 1048, 1149
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	974
ApoI	RAATTY	3 cut(s)	199, 1021, 1237
AsiGI	ACCGGT	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	4 cut(s)	49, 92, 121, 1083
AsuHPI	GGTGA	2 cut(s)	126, 937
AsuII	TTCGAA	2 cut(s)	63, 197
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	731, 763
Bbv12I	GWGCWC	2 cut(s)	105, 733
BccI	CCATC	3 cut(s)	485, 803, 1185
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	393, 1234
BcnI	CCSGG	4 cut(s)	49, 92, 121, 1083
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	186, 1173
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	6 cut(s)	49, 92, 121, 393, 1083, 1234
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	5 cut(s)	183, 375, 438, 499, 940
BmrFI	CCNGG	6 cut(s)	49, 92, 121, 393, 1083, 1234
BmsI	GCATC	1 cut(s)	1008
BpmI	CTGGAG	1 cut(s)	375
Bpu14I	TTCGAA	2 cut(s)	63, 197
BpuEI	CTTGAG	1 cut(s)	1078
BpuMI	CCSGG	4 cut(s)	49, 92, 121, 1083
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	236, 713, 1082, 1136
BsaWI	WCCGGW	3 cut(s)	57, 178, 1187
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 804, 834
Bsc4I	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1109, 1112
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	393, 1234
BseDI	CCNNGG	4 cut(s)	236, 713, 1082, 1136
BseGI	GGATG	1 cut(s)	1196
BseLI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1109, 1112
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	976
BshTI	ACCGGT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	105, 733
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1082, 1188
BslI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1109, 1112
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	976
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	237
Bsp119I	TTCGAA	2 cut(s)	63, 197
Bsp1286I	GDGCHC	3 cut(s)	105, 244, 733
Bsp143I	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
Bsp19I	CCATGG	1 cut(s)	713
BspACI	CCGC	4 cut(s)	109, 141, 217, 669
BspANI	GGCC	1 cut(s)	976
BspCNI	CTCAG	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	5 cut(s)	183, 375, 438, 499, 940
BspPI	GGATC	4 cut(s)	316, 701, 1048, 1149
BspT104I	TTCGAA	2 cut(s)	63, 197
BspTNI	GGTCTC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	597
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	236, 713, 1082, 1136
BssMI	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	393, 1234
Bst4CI	ACNGT	4 cut(s)	152, 405, 518, 938
Bst6I	CTCTTC	1 cut(s)	614
BstBI	TTCGAA	2 cut(s)	63, 197
BstC8I	GCNNGC	3 cut(s)	101, 435, 1131
BstDEI	CTNAG	1 cut(s)	672
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	1196
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	7 cut(s)	271, 324, 709, 789, 1043, 1048, 1157
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
BstMWI	GCNNNNNNNGC	1 cut(s)	821
BstNI	CCWGG	2 cut(s)	393, 1234
BstNSI	RCATGY	2 cut(s)	637, 902
BstSCI	CCNGG	6 cut(s)	47, 90, 119, 391, 1081, 1232
BstUI	CGCG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	976
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	1 cut(s)	1196
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	697, 733
Cac8I	GCNNGC	3 cut(s)	101, 435, 1131
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	7, 748, 1079
CspAI	ACCGGT	1 cut(s)	57
CviAII	CATG	5 cut(s)	311, 634, 714, 899, 1007
CviQI	GTAC	3 cut(s)	7, 748, 1079
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	7 cut(s)	270, 323, 708, 788, 1042, 1047, 1156
DpnII	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	713
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	3 cut(s)	323, 606, 673
Eco88I	CYCGRG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	199, 1021
EcoRII	CCWGG	2 cut(s)	391, 1232
EcoT14I	CCWWGG	1 cut(s)	713
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	5 cut(s)	314, 637, 717, 902, 1010
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FatI	CATG	5 cut(s)	310, 633, 713, 898, 1006
FauI	CCCGC	1 cut(s)	676
FauNDI	CATATG	1 cut(s)	979
FokI	GGATG	1 cut(s)	1203
FriOI	GRGCYC	1 cut(s)	244
FspBI	CTAG	2 cut(s)	186, 1173
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	976
HapII	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1082, 1188
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	5 cut(s)	314, 637, 717, 902, 1010
HinfI	GANTC	9 cut(s)	44, 68, 159, 164, 314, 652, 674, 891, 1229
HpaII	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1082, 1188
HphI	GGTGA	2 cut(s)	126, 937
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	8 cut(s)	246, 326, 618, 640, 679, 786, 1045, 1137
Hpy188III	TCNNGA	3 cut(s)	204, 377, 1226
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	8 cut(s)	147, 214, 298, 637, 916, 922, 998, 1006
HpyCH4III	ACNGT	4 cut(s)	152, 405, 518, 938
HpyCH4V	TGCA	1 cut(s)	1219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	821
HpyF3I	CTNAG	1 cut(s)	672
Hsp92II	CATG	5 cut(s)	314, 637, 717, 902, 1010
Kzo9I	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
LmnI	GCTCC	7 cut(s)	116, 181, 442, 503, 812, 1126, 1138
LweI	GCATC	1 cut(s)	1008
MaeI	CTAG	2 cut(s)	186, 1173
MaeIII	GTNAC	5 cut(s)	800, 832, 892, 1119, 1243
MalI	GATC	7 cut(s)	270, 323, 708, 788, 1042, 1047, 1156
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
MboII	GAAGA	5 cut(s)	77, 238, 241, 500, 631
MhlI	GDGCHC	3 cut(s)	105, 244, 733
MluCI	AATT	7 cut(s)	199, 355, 472, 663, 1021, 1065, 1237
MlyI	GAGTC	4 cut(s)	38, 158, 683, 900
MmeI	TCCRAC	1 cut(s)	96
MseI	TTAA	3 cut(s)	543, 558, 1073
MslI	CAYNNNNRTG	2 cut(s)	807, 982
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1082, 1188
MspR9I	CCNGG	6 cut(s)	49, 92, 121, 393, 1083, 1234
MvaI	CCWGG	2 cut(s)	393, 1234
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	821
NciI	CCSGG	4 cut(s)	49, 92, 121, 1083
NcoI	CCATGG	1 cut(s)	713
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
NlaIII	CATG	5 cut(s)	314, 637, 717, 902, 1010
NlaIV	GGNNCC	5 cut(s)	183, 375, 438, 499, 940
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	2 cut(s)	800, 892
NspI	RCATGY	2 cut(s)	637, 902
NspV	TTCGAA	2 cut(s)	63, 197
PciI	ACATGT	2 cut(s)	633, 898
PfeI	GAWTC	5 cut(s)	68, 159, 314, 652, 1229
PfoI	TCCNGGA	2 cut(s)	47, 1232
PinAI	ACCGGT	1 cut(s)	57
PleI	GAGTC	4 cut(s)	38, 158, 682, 899
PpsI	GAGTC	4 cut(s)	38, 158, 682, 899
PpuMI	RGGWCCY	1 cut(s)	374
PscI	ACATGT	2 cut(s)	633, 898
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	391, 1232
PspGI	CCWGG	2 cut(s)	391, 1232
PspN4I	GGNNCC	5 cut(s)	183, 375, 438, 499, 940
PspPI	GGNCC	1 cut(s)	374
PspPPI	RGGWCCY	1 cut(s)	374
RsaI	GTAC	3 cut(s)	8, 749, 1080
RsaNI	GTAC	3 cut(s)	7, 748, 1079
RseI	CAYNNNNRTG	2 cut(s)	807, 982
SaqAI	TTAA	3 cut(s)	543, 558, 1073
Sau3AI	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	4 cut(s)	38, 158, 683, 900
ScrFI	CCNGG	6 cut(s)	49, 92, 121, 393, 1083, 1234
SduI	GDGCHC	3 cut(s)	105, 244, 733
SfaNI	GCATC	1 cut(s)	1008
SfuI	TTCGAA	2 cut(s)	63, 197
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	807, 982
SmlI	CTYRAG	1 cut(s)	1093
SmoI	CTYRAG	1 cut(s)	1093
Sse9I	AATT	7 cut(s)	199, 355, 472, 663, 1021, 1065, 1237
SsiI	CCGC	4 cut(s)	109, 141, 217, 669
SspMI	CTAG	2 cut(s)	186, 1173
StyD4I	CCNGG	6 cut(s)	47, 90, 119, 391, 1081, 1232
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	4 cut(s)	152, 405, 518, 938
TaqI	TCGA	7 cut(s)	63, 87, 162, 197, 601, 743, 1153
TasI	AATT	7 cut(s)	199, 355, 472, 663, 1021, 1065, 1237
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	5 cut(s)	68, 159, 314, 652, 1229
Tru1I	TTAA	3 cut(s)	543, 558, 1073
Tru9I	TTAA	3 cut(s)	543, 558, 1073
TscAI	CASTG	2 cut(s)	697, 733
TseFI	GTSAC	2 cut(s)	800, 892
Tsp45I	GTSAC	2 cut(s)	800, 892
TspDTI	ATGAA	5 cut(s)	73, 327, 956, 1034, 1224
TspRI	CASTG	2 cut(s)	697, 733
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	3 cut(s)	199, 1021, 1237
XceI	RCATGY	2 cut(s)	637, 902
XspI	CTAG	2 cut(s)	186, 1173
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.