Rorug06G0296900

Belongs to the MT-A70-like family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
44986874 .. 44989860
2987 bp
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UTR
Exon/CDS
Intron
Rorug06G0296900.1

Sequence Viewer

Length: 1758 bp
ATGGCAAAAGTAGAGAAGAAATGCCTTGAGAATGCTGGATTACTAGATTACACAGAAGATGGGACTACAGACCTCAAAGGTAGACCTATTACAAGATCAAAGACTGGGAGATGGAGAGCTTGCTCCTTCCTTGTAGGGTATGAAATATTTGAGAGGATGGCAAATCATGGGATTTCAGCAAACCTAGTGGTGTATTTGGCAAGGAAGCTCCATGAAGGCACTGTAAAATCATCAAACAATGTCACCAACTGGACTGGTACCCTATCTCTCACACCGATATTAGGCGCTTATGTTGCAGATACATATCTTGGCCGATATTGGACCTTTGTTTCTGCATCAGCCATTTATATAATGGGAATGTCACTACTAACCCTAGCAGTATCAGTGCCAGCTCTGAGACCACCATCGTGCGGCCCTGGAATCAAGGACGAGGACTGCACATTAAGAGCTTCGCCATTCCAAGTAGGGATTTTCTATTGTGCATTGTACATGATAGCGGTTGGAATTGGTGGAACAAAACCCAATATCTCAACCATGGGGGCAGACCAATTTGACAGTTTTGAGCCAAAGGAGAAGCATCAGAAGCTCTCCTTCTTTAATTGGTGGATGTTTTGCATAGCCTTTGGTAACTTCTTTTCTTACACTTTCTTGGTGTACATACAAGACAACGTCGGTTGGTCGCTTGGCTATGGGCTCCCAACAATAGGGCTTGTGATCTCAGTGTTGGTGTTCTTGGTTGGTACCCCATTTTACAGGCACAAAATTCCTTCAGGGAGTCCTATAACAAGGGTTGCTCAGGTACTGGTTGCAGCTGTTAGGAAGTGGAAAGTGAATATCCCAAATGACCCCAAAGAGCTTCATGATCAACCAAGCTTGGATGAACATGCAGACAAAATGAAACACAGAATTGACCACACCTCCTCATTAAGATTCCTTGACAGAGCTGCAGTAAAAAGTACCAGGCCAAGCACACCATGGACTCTTTGTCCGGTGACCCAAGTAGAAGAAACCAAGCAAATGATGAAGATGATTCCAGTTTTACTCACCACATTCATTCCTTCCATTATCATAGCTCAAACCCACACCCTTTTCATAAAGCAGGGCACCACTCTAGATGCTTCCATGGGACCCCATTTCAAAATCCCCCCTGCATCTTTCGGAGCCTTCGTAACCATTTTCGTGCTAGTAACCCTCGCAATCTATGACCGCTACTTGGTTCCAACACTACGGAGTTACACCCAAAACCCTAGGGGAATCACAATGCTCAAAAGAATGGGAATAGGGTATGTGGTGCAGATCGTAATCATGGTCCTCGCTTGCTTGGTTGAGAAGAAACGACTACTCGTCGCAAGGGAAAACGGCATTGTTGGCAAAGGAGAGAAAGTTCCCCTCACAATATTTATTCTGCTGCCTCAGTTTGCTCTGATGGGTGTGGCTGATGCGTTTCTGGAAGTTGCAAAGATAGAGTTCTTCTATGACCAAGCACCACAAGGCATGAAGAGCATAGGGACATCATATTATACTAGCAGCTATGCAGTTGGGAGTTTCCTCAGTAGTTTTCTTCTGAAAACAGTTTCTGATATGAGAGATGGCCACAGAGGTTGGGTCTTGGACAATTTGAATTTATCACACTTAGACTACTACTATGCTTTGTTGGCTGGTTTTGTATTTCTTAATTTCCTATTATTTTTGGTTGTTGCAAAGTCTTTTGCTTATAATGTTGACATCTCGGAAGCCAAGATAGCCGTGGAAGCTTGA

Protein Analysis

585

Amino Acids

65.18

Weight (kDa)

9.16

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 106 - 530 1.8e-101 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1716
Acc65I GGTACC 2 cut(s) 257, 740
AccB1I GGYRCC 3 cut(s) 257, 740, 1103
AccI GTMKAC 1 cut(s) 82
AciI CCGC 3 cut(s) 411, 497, 1207
AcoI YGGCCR 2 cut(s) 310, 1591
AcsI RAATTY 2 cut(s) 762, 1621
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 6 cut(s) 259, 488, 656, 742, 801, 958
AfiI CCNNNNNNNGG 4 cut(s) 281, 410, 704, 1213
AgsI TTSAA 2 cut(s) 1138, 1621
AhdI GACNNNNNGTC 2 cut(s) 984, 1343
AjnI CCWGG 2 cut(s) 415, 959
AleI CACNNNNGTG 1 cut(s) 406
AloI GAACNNNNNNTCC 2 cut(s) 1368, 1400
Alw26I GTCTC 1 cut(s) 391
AlwNI CAGNNNCTG 2 cut(s) 802, 1577
AoxI GGCC 4 cut(s) 310, 412, 962, 1591
ApeKI GCWGC 4 cut(s) 809, 944, 1408, 1527
ApoI RAATTY 2 cut(s) 762, 1621
Asp718I GGTACC 2 cut(s) 257, 740
AspA2I CCTAGG 1 cut(s) 1247
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 4 cut(s) 321, 413, 1127, 1309
AsuHPI GGTGA 3 cut(s) 235, 1003, 1036
AvaII GGWCC 3 cut(s) 321, 1127, 1309
AvrII CCTAGG 1 cut(s) 1247
BaeGI GKGCMC 1 cut(s) 1106
BalI TGGCCA 1 cut(s) 1593
BanI GGYRCC 3 cut(s) 257, 740, 1103
BanII GRGCYC 1 cut(s) 696
BbvI GCAGC 4 cut(s) 821, 931, 1395, 1539
BccI CCATC 6 cut(s) 53, 105, 151, 412, 1420, 1583
BceAI ACGGC 2 cut(s) 1375, 1730
BciT130I CCWGG 2 cut(s) 417, 961
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 7 cut(s) 44, 185, 374, 1112, 1184, 1248, 1524
BfmI CTRYAG 2 cut(s) 66, 945
BfoI RGCGCY 1 cut(s) 288
BisI GCNGC 5 cut(s) 412, 810, 945, 1409, 1528
BlnI CCTAGG 1 cut(s) 1247
BlsI GCNGC 5 cut(s) 413, 811, 946, 1410, 1529
Bme1390I CCNGG 2 cut(s) 417, 961
Bme18I GGWCC 3 cut(s) 321, 1127, 1309
BmeRI GACNNNNNGTC 2 cut(s) 984, 1343
BmgT120I GGNCC 4 cut(s) 321, 413, 1127, 1309
BmiI GGNNCC 8 cut(s) 259, 695, 742, 1105, 1128, 1129, 1162, 1218
BmrFI CCNGG 2 cut(s) 417, 961
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 5 cut(s) 344, 586, 1105, 1160, 1429
BmuI ACTGGG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 47
BsaBI GATNNNNATC 2 cut(s) 303, 1301
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 6 cut(s) 415, 534, 974, 1122, 1247, 1746
BsaWI WCCGGW 1 cut(s) 988
BsaXI ACNNNNNCTCC 6 cut(s) 902, 932, 1152, 1182, 1368, 1398
Bsc4I CCNNNNNNNGG 4 cut(s) 281, 410, 704, 1213
Bse1I ACTGG 5 cut(s) 109, 254, 259, 807, 1034
Bse8I GATNNNNATC 2 cut(s) 303, 1301
BseBI CCWGG 2 cut(s) 417, 961
BseDI CCNNGG 6 cut(s) 415, 534, 974, 1122, 1247, 1746
BseGI GGATG 3 cut(s) 162, 612, 883
BseJI GATNNNNATC 2 cut(s) 303, 1301
BseLI CCNNNNNNNGG 4 cut(s) 281, 410, 704, 1213
BseMII CTCAG 5 cut(s) 386, 732, 809, 1427, 1564
BseNI ACTGG 5 cut(s) 109, 254, 259, 807, 1034
BseRI GAGGAG 1 cut(s) 910
BseSI GKGCMC 1 cut(s) 1106
BseXI GCAGC 4 cut(s) 821, 931, 1395, 1539
BsgI GTGCAG 2 cut(s) 421, 1313
BshFI GGCC 4 cut(s) 312, 414, 964, 1593
BshNI GGYRCC 3 cut(s) 257, 740, 1103
BsiSI CCGG 1 cut(s) 989
BslFI GGGAC 3 cut(s) 76, 1140, 1522
BslI CCNNNNNNNGG 4 cut(s) 281, 410, 704, 1213
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 3 cut(s) 76, 1140, 1522
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 4 cut(s) 312, 414, 964, 1593
Bso31I GGTCTC 1 cut(s) 391
Bsp1286I GDGCHC 2 cut(s) 696, 1106
Bsp1407I TGTACA 2 cut(s) 486, 654
Bsp143I GATC 4 cut(s) 95, 714, 862, 1296
Bsp19I CCATGG 3 cut(s) 534, 974, 1122
BspACI CCGC 3 cut(s) 411, 497, 1207
BspANI GGCC 4 cut(s) 312, 414, 964, 1593
BspCNI CTCAG 5 cut(s) 387, 731, 808, 1426, 1563
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 8 cut(s) 259, 695, 742, 1105, 1128, 1129, 1162, 1218
BspMAI CTGCAG 1 cut(s) 949
BspQI GCTCTTC 1 cut(s) 1493
BspT107I GGYRCC 3 cut(s) 257, 740, 1103
BspTNI GGTCTC 1 cut(s) 391
BsrGI TGTACA 2 cut(s) 486, 654
BsrI ACTGG 5 cut(s) 109, 254, 259, 807, 1034
BssECI CCNNGG 6 cut(s) 415, 534, 974, 1122, 1247, 1746
BssMI GATC 4 cut(s) 95, 714, 862, 1296
BssT1I CCWWGG 4 cut(s) 534, 974, 1122, 1247
Bst2UI CCWGG 2 cut(s) 417, 961
Bst4CI ACNGT 3 cut(s) 223, 557, 1573
Bst6I CTCTTC 1 cut(s) 1493
BstAUI TGTACA 2 cut(s) 486, 654
BstC8I GCNNGC 3 cut(s) 121, 390, 1318
BstDEI CTNAG 6 cut(s) 395, 718, 795, 1413, 1550, 1633
BstDSI CCRYGG 4 cut(s) 534, 974, 1122, 1746
BstEII GGTNACC 1 cut(s) 991
BstF5I GGATG 3 cut(s) 162, 612, 883
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 98, 717, 865, 1299
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 4 cut(s) 95, 714, 862, 1296
BstMWI GCNNNNNNNGC 7 cut(s) 293, 583, 1368, 1500, 1655, 1742, 1751
BstNI CCWGG 2 cut(s) 417, 961
BstNSI RCATGY 1 cut(s) 887
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 2 cut(s) 415, 959
BstSFI CTRYAG 2 cut(s) 66, 945
BstSLI GKGCMC 1 cut(s) 1106
BstV1I GCAGC 4 cut(s) 821, 931, 1395, 1539
BsuRI GGCC 4 cut(s) 312, 414, 964, 1593
BtgI CCRYGG 4 cut(s) 534, 974, 1122, 1746
BtsCI GGATG 3 cut(s) 162, 612, 883
BtsIMutI CAGTG 3 cut(s) 219, 390, 726
Cac8I GCNNGC 3 cut(s) 121, 390, 1318
CaiI CAGNNNCTG 2 cut(s) 802, 1577
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 4 cut(s) 321, 413, 1127, 1309
Csp6I GTAC 6 cut(s) 258, 487, 655, 741, 800, 957
CspCI CAANNNNNGTGG 4 cut(s) 168, 203, 1583, 1618
CviQI GTAC 6 cut(s) 258, 487, 655, 741, 800, 957
DdeI CTNAG 6 cut(s) 395, 718, 795, 1413, 1550, 1633
DpnI GATC 4 cut(s) 97, 716, 864, 1298
DpnII GATC 4 cut(s) 95, 714, 862, 1296
DriI GACNNNNNGTC 2 cut(s) 984, 1343
EaeI YGGCCR 2 cut(s) 310, 1591
Eam1104I CTCTTC 1 cut(s) 1493
Eam1105I GACNNNNNGTC 2 cut(s) 984, 1343
EarI CTCTTC 1 cut(s) 1493
Eco130I CCWWGG 4 cut(s) 534, 974, 1122, 1247
Eco24I GRGCYC 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 321, 1127, 1309
Eco57I CTGAAG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 991
EcoO109I RGGNCCY 1 cut(s) 1127
EcoO65I GGTNACC 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 415, 959
EcoT14I CCWWGG 4 cut(s) 534, 974, 1122, 1247
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 4 cut(s) 534, 974, 1122, 1247
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FaqI GGGAC 3 cut(s) 76, 1140, 1522
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 412, 810, 945, 1409, 1528
FokI GGATG 3 cut(s) 169, 619, 890
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 5 cut(s) 412, 810, 945, 1409, 1528
FspBI CTAG 7 cut(s) 44, 185, 374, 1112, 1184, 1248, 1524
GlaI GCGC 1 cut(s) 286
GluI GCNGC 5 cut(s) 412, 810, 945, 1409, 1528
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 4 cut(s) 312, 414, 964, 1593
HapII CCGG 1 cut(s) 989
HhaI GCGC 1 cut(s) 287
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 1723
HindII GTYRAC 1 cut(s) 1723
HindIII AAGCTT 2 cut(s) 871, 1752
HinfI GANTC 6 cut(s) 420, 775, 930, 979, 1030, 1254
HpaII CCGG 1 cut(s) 989
HphI GGTGA 3 cut(s) 235, 1003, 1036
Hpy166II GTNNAC 3 cut(s) 83, 655, 1723
Hpy188I TCNGA 7 cut(s) 396, 582, 1160, 1425, 1566, 1579, 1732
Hpy188III TCNNGA 3 cut(s) 860, 1112, 1448
Hpy8I GTNNAC 3 cut(s) 83, 655, 1723
Hpy99I CGWCG 2 cut(s) 674, 1349
HpyAV CCTTC 6 cut(s) 136, 209, 601, 777, 1068, 1174
HpyCH4III ACNGT 3 cut(s) 223, 557, 1573
HpyCH4IV ACGT 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 7 cut(s) 293, 583, 1368, 1500, 1655, 1742, 1751
HpyF3I CTNAG 6 cut(s) 395, 718, 795, 1413, 1550, 1633
HpySE526I ACGT 1 cut(s) 669
HspAI GCGC 1 cut(s) 285
KflI GGGWCCC 1 cut(s) 1127
KpnI GGTACC 2 cut(s) 261, 744
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 4 cut(s) 95, 714, 862, 1296
LguI GCTCTTC 1 cut(s) 1493
LmnI GCTCC 4 cut(s) 128, 213, 699, 1160
Lsp1109I GCAGC 4 cut(s) 821, 931, 1395, 1539
LweI GCATC 5 cut(s) 344, 586, 1105, 1160, 1429
MaeI CTAG 7 cut(s) 44, 185, 374, 1112, 1184, 1248, 1524
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 7 cut(s) 241, 360, 626, 991, 1168, 1186, 1232
MalI GATC 4 cut(s) 97, 716, 864, 1298
MboI GATC 4 cut(s) 95, 714, 862, 1296
MboII GAAGA 8 cut(s) 28, 68, 1016, 1036, 1342, 1462, 1510, 1553
MhlI GDGCHC 2 cut(s) 696, 1106
MlsI TGGCCA 1 cut(s) 1593
MluCI AATT 8 cut(s) 504, 548, 598, 762, 906, 1615, 1621, 1675
MluNI TGGCCA 1 cut(s) 1593
MlyI GAGTC 2 cut(s) 784, 973
MmeI TCCRAC 2 cut(s) 481, 1244
Mox20I TGGCCA 1 cut(s) 1593
MscI TGGCCA 1 cut(s) 1593
MseI TTAA 4 cut(s) 443, 597, 926, 1674
MslI CAYNNNNRTG 2 cut(s) 406, 1178
Msp20I TGGCCA 1 cut(s) 1593
MspA1I CMGCKG 1 cut(s) 812
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 2 cut(s) 417, 961
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 2 cut(s) 417, 961
MwoI GCNNNNNNNGC 7 cut(s) 293, 583, 1368, 1500, 1655, 1742, 1751
NcoI CCATGG 3 cut(s) 534, 974, 1122
NdeII GATC 4 cut(s) 95, 714, 862, 1296
NlaIV GGNNCC 8 cut(s) 259, 695, 742, 1105, 1128, 1129, 1162, 1218
NmuCI GTSAC 3 cut(s) 241, 360, 991
NspI RCATGY 1 cut(s) 887
OliI CACNNNNGTG 1 cut(s) 406
PagI TCATGA 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 1493
PcsI WCGNNNNNNNCGW 1 cut(s) 1164
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 4 cut(s) 420, 930, 1030, 1254
PflFI GACNNNGTC 1 cut(s) 668
PkrI GCNGC 5 cut(s) 413, 811, 946, 1410, 1529
PleI GAGTC 2 cut(s) 783, 973
PpsI GAGTC 2 cut(s) 783, 973
PpuMI RGGWCCY 1 cut(s) 1127
PsiI TTATAA 1 cut(s) 1716
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 2 cut(s) 415, 959
PspEI GGTNACC 1 cut(s) 991
PspGI CCWGG 2 cut(s) 415, 959
PspN4I GGNNCC 8 cut(s) 259, 695, 742, 1105, 1128, 1129, 1162, 1218
PspPI GGNCC 4 cut(s) 321, 413, 1127, 1309
PspPPI RGGWCCY 1 cut(s) 1127
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 2 cut(s) 802, 1577
PsyI GACNNNGTC 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 6 cut(s) 259, 488, 656, 742, 801, 958
RsaNI GTAC 6 cut(s) 258, 487, 655, 741, 800, 957
RseI CAYNNNNRTG 2 cut(s) 406, 1178
SapI GCTCTTC 1 cut(s) 1493
SaqAI TTAA 4 cut(s) 443, 597, 926, 1674
SatI GCNGC 5 cut(s) 412, 810, 945, 1409, 1528
Sau3AI GATC 4 cut(s) 95, 714, 862, 1296
Sau96I GGNCC 4 cut(s) 321, 413, 1127, 1309
SchI GAGTC 2 cut(s) 784, 973
ScrFI CCNGG 2 cut(s) 417, 961
SduI GDGCHC 2 cut(s) 696, 1106
SfaNI GCATC 5 cut(s) 344, 586, 1105, 1160, 1429
SfcI CTRYAG 2 cut(s) 66, 945
SinI GGWCC 3 cut(s) 321, 1127, 1309
SmiMI CAYNNNNRTG 2 cut(s) 406, 1178
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 8 cut(s) 504, 548, 598, 762, 906, 1615, 1621, 1675
SsiI CCGC 3 cut(s) 411, 497, 1207
SspI AATATT 2 cut(s) 147, 1398
SspMI CTAG 7 cut(s) 44, 185, 374, 1112, 1184, 1248, 1524
StyD4I CCNGG 2 cut(s) 415, 959
StyI CCWWGG 4 cut(s) 534, 974, 1122, 1247
TaaI ACNGT 3 cut(s) 223, 557, 1573
TaiI ACGT 1 cut(s) 672
TasI AATT 8 cut(s) 504, 548, 598, 762, 906, 1615, 1621, 1675
TatI WGTACW 2 cut(s) 486, 654
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 4 cut(s) 420, 930, 1030, 1254
Tru1I TTAA 4 cut(s) 443, 597, 926, 1674
Tru9I TTAA 4 cut(s) 443, 597, 926, 1674
TscAI CASTG 3 cut(s) 226, 390, 726
TseFI GTSAC 3 cut(s) 241, 360, 991
TseI GCWGC 4 cut(s) 809, 944, 1408, 1527
Tsp45I GTSAC 3 cut(s) 241, 360, 991
TspDTI ATGAA 9 cut(s) 156, 228, 848, 894, 911, 1037, 1042, 1081, 1511
TspGWI ACGGA 1 cut(s) 1243
TspRI CASTG 3 cut(s) 226, 390, 726
Tth111I GACNNNGTC 1 cut(s) 668
VpaK11BI GGWCC 3 cut(s) 321, 1127, 1309
XapI RAATTY 2 cut(s) 762, 1621
XbaI TCTAGA 1 cut(s) 1111
XceI RCATGY 1 cut(s) 887
XcmI CCANNNNNNNNNTGG 3 cut(s) 349, 972, 1744
XmaJI CCTAGG 1 cut(s) 1247
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 7 cut(s) 44, 185, 374, 1112, 1184, 1248, 1524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.