Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010167

Physical Location & Seq

Genomic Coordinates Forward (+)

59627441 .. 59630151

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGTACTCCAAAACCACCGATAAGCTAACCGAGTTTTTGGACTCCGGGATTTACCGGTTCGAAGATTCCAACGCCGTTTTCATCGACCCGGTTCGCGTGCTCAACCGCTCCTACACCCGGTTTAGGGTTTCACCTTCCGCTTACTACTGTCGCCGATTCGACTCCACTTGCCCACCGGAGCCTAGCGTCGCTTCGAATTCCAGGAAGCGAAAGCGGAAGGAGAAGAAGCCTCGGGCTCTGAACGAAAGAGAACAAGTCGCCGATCAACGCCACCAGGAAGTGAGACCTTTCTTACTGAAGGCACATGAATCTTTGATCCGAACAAGTGAGGTGTTAGAGGTTATGAGCAATTTGAGGGGTTGTTTGGGTCCTGAAACTTCATCTCCAGGTGTTGAACAGTCATTTGTTGAACTCGCACAGGTCTGGCAGGCCCCTCTTTACGAGATTACTCTAAACTTCCATACAAATTACAAACAAGGGGAAGATGGAGGCTCCCTTGCTACGCAAGACTGTGAACAATGTGTTCTCCCTGTGTTTAACAACTTGGTCGTTAATGAGAGCAGTAATGATGTGGAGGCTGAAGTTTTGACCAGTCGATATATTTTGCCTCCGAAGAGTTCCTTCTACATGTCAGATATGGGGCAGATTCACAATCTAATTCCTGCTGAGTCTGATTTTGGCTTCAGTGTTATAGTTGTTGATCCACCATGGGAAAATGGCAGTGCTCGGCAGAAGTCGAGGTACAAAACTTTGCCCAACCGATATTTCTTATCCATTCCGATCAAGCAACTTTGTCACACAGATGGAGCATTTGTCGCCTTATGGGTAACAAATAGGGAGAAGTTGCGTGATTTTGTCGAGAAAGAGCTGTTTCCTGCTTGGGGAGTCACACATGTTGCTACTTTTTTCTGGTTGAAGGTGAAAGCTGACGGTTCCTTGATTTGTGATTTAGACCTGTTTCATCATAGGCCATATGAGTGCCTTCTTGTGGGCATCTGTCATGGGAAGGTTATGAATTCTAAACAGCTATTGGGATCAGATCATATACCAGATAATCAAATTATATTAAGCGTACCGGGGGATTACTCAAGGAAGCCCCCAATAGGAGGATTGTTACAGGAGCTTGCTCCGAGGCTCAAAGGTGGTCGATCCATTGAACTATTTGCTAGAGAAATGACAACCGGATGGGTTTCTTGGGGGAATGAACCCCTTCATTTTCAAGAATCCAGGAATTTTGTAACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009007 GO:0009008 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0032775 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

MT-A70

Protein Analysis

416

Amino Acids

47.49

Weight (kDa)

6.44

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	229 - 403	9e-35	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19340
fragaria_vesca	FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230
malus_domestica	MD04G1062700.v1.1
prunus_persica	Prupe.1G383100_v2.0.a1 Prupe.1G383100_v2.0.a1
pyrus_communis	pycom04g05610
rosa_chinensis	RchiOBHm_Chr6g0300531
rosa_laevigata	RLG00000011326
rosa_multiflora	Rmu_sc0001476.1_g000020
rosa_roxburghii	Rroxscaffold_7G00167690
rosa_rugosa	Rorug06G0296900 Rorug06G0296900
rosa_samantha	Rh6AG409500 Rh6BG416700 Rh6CG424400 Rh6DG410000
rosa_wichuraiana	Rw6G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	109, 141, 217
AclWI	GGATC	4 cut(s)	313, 698, 1045, 1146
AcsI	RAATTY	3 cut(s)	199, 1018, 1234
AcuI	CTGAAG	3 cut(s)	320, 603, 670
AfaI	GTAC	3 cut(s)	8, 746, 1077
AfiI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 884, 991, 1106, 1109
AflIII	ACRYGT	2 cut(s)	630, 895
AgeI	ACCGGT	1 cut(s)	57
AgsI	TTSAA	5 cut(s)	398, 413, 919, 1160, 1223
AjnI	CCWGG	4 cut(s)	203, 276, 388, 1229
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 752, 784
AluBI	AGCT	5 cut(s)	28, 871, 929, 1030, 1126
AluI	AGCT	5 cut(s)	28, 871, 929, 1030, 1126
Alw21I	GWGCWC	2 cut(s)	105, 730
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	4 cut(s)	313, 698, 1045, 1146
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	2 cut(s)	432, 971
ApoI	RAATTY	3 cut(s)	199, 1018, 1234
AsiGI	ACCGGT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	1212
AspS9I	GGNCC	2 cut(s)	371, 433
AsuC2I	CCSGG	4 cut(s)	49, 92, 121, 1080
AsuHPI	GGTGA	2 cut(s)	126, 934
AsuII	TTCGAA	2 cut(s)	63, 197
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
Bbv12I	GWGCWC	2 cut(s)	105, 730
BccI	CCATC	3 cut(s)	482, 800, 1182
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	4 cut(s)	205, 278, 390, 1231
BcnI	CCSGG	4 cut(s)	49, 92, 121, 1080
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	2 cut(s)	186, 1170
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	8 cut(s)	49, 92, 121, 205, 278, 390, 1080, 1231
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	371, 433
BmiI	GGNNCC	5 cut(s)	183, 372, 435, 496, 937
BmrFI	CCNGG	8 cut(s)	49, 92, 121, 205, 278, 390, 1080, 1231
BmsI	GCATC	1 cut(s)	1005
BpmI	CTGGAG	1 cut(s)	372
Bpu14I	TTCGAA	2 cut(s)	63, 197
BpuEI	CTTGAG	1 cut(s)	1075
BpuMI	CCSGG	4 cut(s)	49, 92, 121, 1080
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	233, 710, 1079, 1133
BsaWI	WCCGGW	3 cut(s)	57, 178, 1184
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 801, 831
Bsc4I	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 884, 991, 1106, 1109
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	594
BseBI	CCWGG	4 cut(s)	205, 278, 390, 1231
BseDI	CCNNGG	4 cut(s)	233, 710, 1079, 1133
BseGI	GGATG	1 cut(s)	1193
BseLI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 884, 991, 1106, 1109
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	594
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	434, 973
BshTI	ACCGGT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	105, 730
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1079, 1185
BslI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 884, 991, 1106, 1109
BsmAI	GTCTC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	434, 973
Bso31I	GGTCTC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	234
Bsp119I	TTCGAA	2 cut(s)	63, 197
Bsp1286I	GDGCHC	3 cut(s)	105, 241, 730
Bsp143I	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
Bsp19I	CCATGG	1 cut(s)	710
BspACI	CCGC	3 cut(s)	109, 141, 217
BspANI	GGCC	2 cut(s)	434, 973
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	5 cut(s)	183, 372, 435, 496, 937
BspPI	GGATC	4 cut(s)	313, 698, 1045, 1146
BspT104I	TTCGAA	2 cut(s)	63, 197
BspTNI	GGTCTC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	594
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	233, 710, 1079, 1133
BssMI	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
BssT1I	CCWWGG	1 cut(s)	710
Bst2UI	CCWGG	4 cut(s)	205, 278, 390, 1231
Bst4CI	ACNGT	4 cut(s)	152, 402, 515, 935
Bst6I	CTCTTC	1 cut(s)	611
BstBI	TTCGAA	2 cut(s)	63, 197
BstC8I	GCNNGC	3 cut(s)	101, 432, 1128
BstDEI	CTNAG	1 cut(s)	669
BstDSI	CCRYGG	1 cut(s)	710
BstF5I	GGATG	1 cut(s)	1193
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	7 cut(s)	268, 321, 706, 786, 1040, 1045, 1154
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstNI	CCWGG	4 cut(s)	205, 278, 390, 1231
BstNSI	RCATGY	2 cut(s)	634, 899
BstSCI	CCNGG	8 cut(s)	47, 90, 119, 203, 276, 388, 1078, 1229
BstUI	CGCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	434, 973
BtgI	CCRYGG	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	1193
BtsI	GCAGTG	1 cut(s)	730
BtsIMutI	CAGTG	2 cut(s)	694, 730
Cac8I	GCNNGC	3 cut(s)	101, 432, 1128
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	371, 433
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	7, 745, 1076
CspAI	ACCGGT	1 cut(s)	57
CviAII	CATG	5 cut(s)	308, 631, 711, 896, 1004
CviQI	GTAC	3 cut(s)	7, 745, 1076
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	7 cut(s)	267, 320, 705, 785, 1039, 1044, 1153
DpnII	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	710
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	320, 603, 670
Eco88I	CYCGRG	1 cut(s)	234
EcoO109I	RGGNCCY	2 cut(s)	371, 433
EcoRI	GAATTC	2 cut(s)	199, 1018
EcoRII	CCWGG	4 cut(s)	203, 276, 388, 1229
EcoT14I	CCWWGG	1 cut(s)	710
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	5 cut(s)	311, 634, 714, 899, 1007
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FatI	CATG	5 cut(s)	307, 630, 710, 895, 1003
FauNDI	CATATG	1 cut(s)	976
FokI	GGATG	1 cut(s)	1200
FriOI	GRGCYC	1 cut(s)	241
FspBI	CTAG	2 cut(s)	186, 1170
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	434, 973
HapII	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1079, 1185
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	5 cut(s)	311, 634, 714, 899, 1007
HinfI	GANTC	9 cut(s)	44, 68, 159, 164, 311, 649, 671, 888, 1226
HpaII	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1079, 1185
HphI	GGTGA	2 cut(s)	126, 934
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	8 cut(s)	243, 323, 615, 637, 676, 783, 1042, 1134
Hpy188III	TCNNGA	3 cut(s)	374, 862, 1223
Hpy8I	GTNNAC	1 cut(s)	518
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	8 cut(s)	147, 214, 295, 634, 913, 995, 1003, 1223
HpyCH4III	ACNGT	4 cut(s)	152, 402, 515, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	1 cut(s)	669
Hsp92II	CATG	5 cut(s)	311, 634, 714, 899, 1007
Kzo9I	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
LmnI	GCTCC	6 cut(s)	116, 181, 500, 809, 1123, 1135
LweI	GCATC	1 cut(s)	1005
MaeI	CTAG	2 cut(s)	186, 1170
MaeIII	GTNAC	5 cut(s)	797, 829, 889, 1116, 1240
MalI	GATC	7 cut(s)	267, 320, 705, 785, 1039, 1044, 1153
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
MboII	GAAGA	4 cut(s)	77, 238, 497, 628
MhlI	GDGCHC	3 cut(s)	105, 241, 730
MluCI	AATT	7 cut(s)	199, 352, 469, 660, 1018, 1062, 1234
MlyI	GAGTC	4 cut(s)	38, 158, 680, 897
MmeI	TCCRAC	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	1212
MseI	TTAA	3 cut(s)	540, 555, 1070
MslI	CAYNNNNRTG	2 cut(s)	804, 979
MspI	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1079, 1185
MspR9I	CCNGG	8 cut(s)	49, 92, 121, 205, 278, 390, 1080, 1231
MvaI	CCWGG	4 cut(s)	205, 278, 390, 1231
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	818
NciI	CCSGG	4 cut(s)	49, 92, 121, 1080
NcoI	CCATGG	1 cut(s)	710
NdeI	CATATG	1 cut(s)	976
NdeII	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
NlaIII	CATG	5 cut(s)	311, 634, 714, 899, 1007
NlaIV	GGNNCC	5 cut(s)	183, 372, 435, 496, 937
NmeAIII	GCCGAG	1 cut(s)	709
NmuCI	GTSAC	2 cut(s)	797, 889
NspI	RCATGY	2 cut(s)	634, 899
NspV	TTCGAA	2 cut(s)	63, 197
PciI	ACATGT	2 cut(s)	630, 895
PdmI	GAANNNNTTC	1 cut(s)	1212
PfeI	GAWTC	5 cut(s)	68, 159, 311, 649, 1226
PfoI	TCCNGGA	3 cut(s)	47, 203, 1229
PinAI	ACCGGT	1 cut(s)	57
PleI	GAGTC	4 cut(s)	38, 158, 679, 896
PpsI	GAGTC	4 cut(s)	38, 158, 679, 896
PpuMI	RGGWCCY	1 cut(s)	371
PscI	ACATGT	2 cut(s)	630, 895
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	4 cut(s)	203, 276, 388, 1229
PspGI	CCWGG	4 cut(s)	203, 276, 388, 1229
PspN4I	GGNNCC	5 cut(s)	183, 372, 435, 496, 937
PspPI	GGNCC	2 cut(s)	371, 433
PspPPI	RGGWCCY	1 cut(s)	371
RsaI	GTAC	3 cut(s)	8, 746, 1077
RsaNI	GTAC	3 cut(s)	7, 745, 1076
RseI	CAYNNNNRTG	2 cut(s)	804, 979
SaqAI	TTAA	3 cut(s)	540, 555, 1070
Sau3AI	GATC	7 cut(s)	265, 318, 703, 783, 1037, 1042, 1151
Sau96I	GGNCC	2 cut(s)	371, 433
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	4 cut(s)	38, 158, 680, 897
ScrFI	CCNGG	8 cut(s)	49, 92, 121, 205, 278, 390, 1080, 1231
SduI	GDGCHC	3 cut(s)	105, 241, 730
SfaNI	GCATC	1 cut(s)	1005
SfuI	TTCGAA	2 cut(s)	63, 197
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	804, 979
SmlI	CTYRAG	1 cut(s)	1090
SmoI	CTYRAG	1 cut(s)	1090
Sse9I	AATT	7 cut(s)	199, 352, 469, 660, 1018, 1062, 1234
SsiI	CCGC	3 cut(s)	109, 141, 217
SspMI	CTAG	2 cut(s)	186, 1170
StyD4I	CCNGG	8 cut(s)	47, 90, 119, 203, 276, 388, 1078, 1229
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	4 cut(s)	152, 402, 515, 935
TaqI	TCGA	8 cut(s)	63, 87, 162, 197, 598, 740, 861, 1150
TasI	AATT	7 cut(s)	199, 352, 469, 660, 1018, 1062, 1234
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	5 cut(s)	68, 159, 311, 649, 1226
Tru1I	TTAA	3 cut(s)	540, 555, 1070
Tru9I	TTAA	3 cut(s)	540, 555, 1070
TscAI	CASTG	2 cut(s)	694, 730
TseFI	GTSAC	2 cut(s)	797, 889
Tsp45I	GTSAC	2 cut(s)	797, 889
TspDTI	ATGAA	7 cut(s)	73, 324, 372, 953, 1031, 1205, 1221
TspRI	CASTG	2 cut(s)	694, 730
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	3 cut(s)	199, 1018, 1234
XceI	RCATGY	2 cut(s)	634, 899
XmnI	GAANNNNTTC	1 cut(s)	1212
XspI	CTAG	2 cut(s)	186, 1170
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.