MD04G1062700.v1.1

Belongs to the MT-A70-like family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
8231269 .. 8234696
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1062700.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGGAGGACTCGAAACCAGCCGGCAAGCTATCGACGTTTTTGGACTCCGGCGTGTACCGGTTCGAAGACTCGACCGCCGTTTTCATCGATCCGGTTCGCGTCCTCAACCGCTCCTACACCCGGTTCAGGGTGTCCCCTTCCGCCTACTACTCCCGCTCATTCAAATCCAAAATTCAAGAGCCTAGGGTTTGTTCGAATTCCAGAAAGCGGAAGCGGAAGGAGAAGAAGCCTCAGAATCTCAATGACAGAGAACGCGCCGCCGATCAACGCCACCAGGAAGCAAGACCTTTTTTGCTGAAGGCGCATAAATCTCTACTTAGATCAACTGAGCTTTTAGAGGTTGTGAGCAATTTGAGGGATGATTTCGATAATTCAGCTTCGTCTCCCGGCACTACGCAGTCGCTGGTTGAACTCGGGCGGGTCTGGCAGGCGCCGCTGTATGAGATAACTTTAAATTCGCAATCACATGACAATGCAAGCGAAGATGGAGGTTCCCCTGTCATGGAATACTGTAAACAACGAGCAGTTCCTGTGTTTAACAACTTAGTCGTTAATGAGACCAGTGAAGATGTGGAGGCTGAACTTTTGGGCAGTCGATATATCTTACCTCCAGAGAGTTCCTTCTACATGTCTGATCTGGGGCAGATTCACAATCTAATTCCTGAGTCTGATTGTGGCTTCAATCTTATTGTTGTTGATCCACCATGGGAAAATGGAAGTGCGCGTCAAAAGCTGAGGTACTCAACTTTGCCCAACCGATATTTCTTATCCCTTCCCATCAAGCAATTGTGTCACACAAATGGAGCACTTGTTGCTTTATGGGTGACCAACAGGGAGAAGTTGCGTGGCTTTGTCGAGAAGGAACTTTTTCCTGCATGGGGAGTCGAATATGCTGCTACTTTTTTCTGGTTGAAGGTTCTCAGTTTGGGCGTCAAAGCAGATGGTTCTTTGATTGGCGATTTGGACCTCTTTCATCACAGGCCATATGAGTGCCTTCTATTAGGCCTTTGTCCAGGGGAGGCTACGGACGACAATTCAAGATCCAAACCTATACCAGATAATCAAATCATGTTAAGCATACCAGGAGACTACTCAAGGAAGCCCCCGGTAGCAAGATTTTTACAGGAGTATTCTCCTACACTCCAACGTAATCGGTGTGTTGAACTATTCGCCAGAGAAATGACTGCCGGATGTGTTTCTTGGGGGAATGAACCCCTTCATTTTCAGGAGTCAGGAAATTTTACGAGGGGGTAG

Protein Analysis

418

Amino Acids

47.34

Weight (kDa)

7.08

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MT-A70 PF05063 227 - 404 8.3e-30 MT-A70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccBSI CCGCTC 2 cut(s) 111, 156
AccII CGCG 3 cut(s) 99, 255, 724
AciI CCGC 9 cut(s) 75, 109, 141, 154, 208, 214, 258, 418, 434
AclWI GGATC 3 cut(s) 83, 692, 1035
AcsI RAATTY 4 cut(s) 171, 196, 454, 1237
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 2 cut(s) 431, 930
AfaI GTAC 2 cut(s) 56, 740
AfiI CCNNNNNNNGG 6 cut(s) 120, 126, 127, 207, 502, 878
AflIII ACRYGT 1 cut(s) 627
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 7 cut(s) 163, 176, 410, 682, 913, 1038, 1163
AjnI CCWGG 3 cut(s) 273, 1012, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 4 cut(s) 28, 331, 377, 733
AluI AGCT 4 cut(s) 28, 331, 377, 733
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 3 cut(s) 387, 551, 1080
AlwI GGATC 3 cut(s) 83, 692, 1035
AlwNI CAGNNNCTG 2 cut(s) 403, 530
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 2 cut(s) 980, 1003
ApeKI GCWGC 1 cut(s) 893
ApoI RAATTY 4 cut(s) 171, 196, 454, 1237
AsiGI ACCGGT 1 cut(s) 57
Asp700I GAANNNNTTC 2 cut(s) 867, 1215
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 4 cut(s) 257, 304, 433, 724
AspS9I GGNCC 1 cut(s) 964
AsuC2I CCSGG 3 cut(s) 121, 387, 1106
AsuHPI GGTGA 1 cut(s) 835
AsuII TTCGAA 2 cut(s) 63, 194
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 964
AvrII CCTAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 808
BbvCI CCTCAGC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 880
BccI CCATC 3 cut(s) 479, 785, 935
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 3 cut(s) 275, 1014, 1083
BcnI CCSGG 3 cut(s) 121, 387, 1106
BcoDI GTCTC 3 cut(s) 387, 551, 1080
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 434
BisI GCNGC 3 cut(s) 258, 434, 894
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 3 cut(s) 259, 435, 895
Bme1390I CCNGG 6 cut(s) 121, 275, 387, 1014, 1083, 1106
Bme18I GGWCC 1 cut(s) 964
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 2 cut(s) 432, 493
BmrFI CCNGG 6 cut(s) 121, 275, 387, 1014, 1083, 1106
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 734
Bpu14I TTCGAA 2 cut(s) 63, 194
BpuEI CTTGAG 1 cut(s) 1078
BpuMI CCSGG 3 cut(s) 121, 387, 1106
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 431, 930
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 182, 704, 1013, 1104
BsaWI WCCGGW 2 cut(s) 57, 91
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 126, 127, 207, 502, 878
Bse118I RCCGGY 2 cut(s) 20, 57
Bse1I ACTGG 1 cut(s) 561
BseBI CCWGG 3 cut(s) 275, 1014, 1083
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 4 cut(s) 182, 704, 1013, 1104
BseGI GGATG 2 cut(s) 364, 1196
BseLI CCNNNNNNNGG 6 cut(s) 120, 126, 127, 207, 502, 878
BseMII CTCAG 5 cut(s) 245, 318, 654, 725, 934
BseNI ACTGG 1 cut(s) 561
BseXI GCAGC 1 cut(s) 880
Bsh1236I CGCG 3 cut(s) 99, 255, 724
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 982, 1005
BshNI GGYRCC 1 cut(s) 430
BshTI ACCGGT 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 8 cut(s) 21, 48, 58, 92, 121, 387, 1106, 1188
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 6 cut(s) 120, 126, 127, 207, 502, 878
BsmAI GTCTC 3 cut(s) 387, 551, 1080
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 2 cut(s) 982, 1005
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 413
Bsp119I TTCGAA 2 cut(s) 63, 194
Bsp1286I GDGCHC 1 cut(s) 808
Bsp143I GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 9 cut(s) 75, 109, 141, 154, 208, 214, 258, 418, 434
BspANI GGCC 2 cut(s) 982, 1005
BspCNI CTCAG 5 cut(s) 244, 319, 655, 726, 933
BspDI ATCGAT 1 cut(s) 87
BspFNI CGCG 3 cut(s) 99, 255, 724
BspLI GGNNCC 2 cut(s) 432, 493
BspPI GGATC 3 cut(s) 83, 692, 1035
BspT104I TTCGAA 2 cut(s) 63, 194
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 551
BsrBI CCGCTC 2 cut(s) 111, 156
BsrFI RCCGGY 2 cut(s) 20, 57
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 2 cut(s) 20, 57
BssECI CCNNGG 4 cut(s) 182, 704, 1013, 1104
BssMI GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
BssNI GRCGYC 2 cut(s) 431, 930
BssT1I CCWWGG 2 cut(s) 182, 704
Bst2UI CCWGG 3 cut(s) 275, 1014, 1083
Bst4CI ACNGT 1 cut(s) 512
BstACI GRCGYC 2 cut(s) 431, 930
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBI TTCGAA 2 cut(s) 63, 194
BstC8I GCNNGC 4 cut(s) 22, 26, 429, 478
BstDEI CTNAG 7 cut(s) 231, 317, 327, 544, 663, 734, 920
BstDSI CCRYGG 1 cut(s) 704
BstEII GGTNACC 1 cut(s) 823
BstF5I GGATG 2 cut(s) 364, 1196
BstFNI CGCG 3 cut(s) 99, 255, 724
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 4 cut(s) 257, 304, 433, 724
BstKTI GATC 6 cut(s) 91, 265, 323, 637, 700, 1043
BstMAI GTCTC 3 cut(s) 387, 551, 1080
BstMBI GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 5 cut(s) 301, 424, 433, 730, 812
BstNI CCWGG 3 cut(s) 275, 1014, 1083
BstNSI RCATGY 1 cut(s) 631
BstPI GGTNACC 1 cut(s) 823
BstSCI CCNGG 6 cut(s) 119, 273, 385, 1012, 1081, 1104
BstUI CGCG 3 cut(s) 99, 255, 724
BstV1I GCAGC 1 cut(s) 880
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 1040
BstYI RGATCY 1 cut(s) 1040
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 2 cut(s) 982, 1005
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 704
BtsCI GGATG 2 cut(s) 364, 1196
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 4 cut(s) 22, 26, 429, 478
CaiI CAGNNNCTG 2 cut(s) 403, 530
CfoI GCGC 4 cut(s) 257, 304, 433, 724
Cfr10I RCCGGY 2 cut(s) 20, 57
Cfr13I GGNCC 1 cut(s) 964
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 3 cut(s) 88, 713, 919
Csp6I GTAC 2 cut(s) 55, 739
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 6 cut(s) 467, 502, 628, 705, 876, 1069
CviQI GTAC 2 cut(s) 55, 739
DdeI CTNAG 7 cut(s) 231, 317, 327, 544, 663, 734, 920
DinI GGCGCC 1 cut(s) 432
DpnI GATC 6 cut(s) 90, 264, 322, 636, 699, 1042
DpnII GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
DraI TTTAAA 1 cut(s) 453
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 182, 704
Eco147I AGGCCT 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 823
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 273, 1012, 1081
EcoT14I CCWWGG 2 cut(s) 182, 704
EgeI GGCGCC 1 cut(s) 432
EheI GGCGCC 1 cut(s) 432
ErhI CCWWGG 2 cut(s) 182, 704
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 6 cut(s) 470, 505, 631, 708, 879, 1072
FaqI GGGAC 1 cut(s) 118
FatI CATG 6 cut(s) 466, 501, 627, 704, 875, 1068
FauI CCCGC 2 cut(s) 161, 411
FauNDI CATATG 1 cut(s) 985
Fnu4HI GCNGC 3 cut(s) 258, 434, 894
FokI GGATG 2 cut(s) 371, 1203
Fsp4HI GCNGC 3 cut(s) 258, 434, 894
FspBI CTAG 1 cut(s) 183
GlaI GCGC 4 cut(s) 256, 303, 432, 723
GluI GCNGC 3 cut(s) 258, 434, 894
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 2 cut(s) 982, 1005
HapII CCGG 8 cut(s) 21, 48, 58, 92, 121, 387, 1106, 1188
HgaI GACGC 3 cut(s) 88, 713, 919
HhaI GCGC 4 cut(s) 257, 304, 433, 724
Hin1I GRCGYC 2 cut(s) 431, 930
Hin1II CATG 6 cut(s) 470, 505, 631, 708, 879, 1072
Hin6I GCGC 4 cut(s) 255, 302, 431, 722
HinP1I GCGC 4 cut(s) 255, 302, 431, 722
HinfI GANTC 8 cut(s) 8, 44, 68, 235, 646, 665, 882, 1229
HpaII CCGG 8 cut(s) 21, 48, 58, 92, 121, 387, 1106, 1188
HphI GGTGA 1 cut(s) 835
Hpy166II GTNNAC 2 cut(s) 55, 515
Hpy188I TCNGA 3 cut(s) 234, 634, 670
Hpy188III TCNNGA 8 cut(s) 176, 201, 611, 662, 856, 1038, 1226, 1233
Hpy8I GTNNAC 2 cut(s) 55, 515
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 9 cut(s) 147, 211, 292, 631, 782, 853, 907, 1004, 1226
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 2 cut(s) 35, 1147
HpyCH4V TGCA 2 cut(s) 476, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 301, 424, 433, 730, 812
HpyF3I CTNAG 7 cut(s) 231, 317, 327, 544, 663, 734, 920
HpySE526I ACGT 2 cut(s) 35, 1147
Hsp92I GRCGYC 2 cut(s) 431, 930
Hsp92II CATG 6 cut(s) 470, 505, 631, 708, 879, 1072
HspAI GCGC 4 cut(s) 255, 302, 431, 722
KasI GGCGCC 1 cut(s) 430
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
LmnI GCTCC 2 cut(s) 116, 803
Lsp1109I GCAGC 1 cut(s) 880
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 35, 1147
MaeIII GTNAC 2 cut(s) 791, 823
MalI GATC 6 cut(s) 90, 264, 322, 636, 699, 1042
MbiI CCGCTC 2 cut(s) 111, 156
MboI GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
MboII GAAGA 4 cut(s) 77, 235, 494, 578
MfeI CAATTG 1 cut(s) 785
MflI RGATCY 1 cut(s) 1040
MhlI GDGCHC 1 cut(s) 808
MluCI AATT 9 cut(s) 171, 196, 349, 370, 454, 657, 785, 1033, 1237
Mly113I GGCGCC 1 cut(s) 431
MlyI GAGTC 6 cut(s) 2, 38, 62, 674, 891, 1238
MmeI TCCRAC 1 cut(s) 1168
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 2 cut(s) 867, 1215
MseI TTAA 4 cut(s) 452, 537, 552, 1073
MslI CAYNNNNRTG 3 cut(s) 471, 798, 988
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 8 cut(s) 21, 48, 58, 92, 121, 387, 1106, 1188
MspR9I CCNGG 6 cut(s) 121, 275, 387, 1014, 1083, 1106
MunI CAATTG 1 cut(s) 785
MvaI CCWGG 3 cut(s) 275, 1014, 1083
MvnI CGCG 3 cut(s) 99, 255, 724
MwoI GCNNNNNNNGC 5 cut(s) 301, 424, 433, 730, 812
NaeI GCCGGC 1 cut(s) 22
NarI GGCGCC 1 cut(s) 431
NciI CCSGG 3 cut(s) 121, 387, 1106
NcoI CCATGG 1 cut(s) 704
NdeI CATATG 1 cut(s) 985
NdeII GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 6 cut(s) 470, 505, 631, 708, 879, 1072
NlaIV GGNNCC 2 cut(s) 432, 493
NmuCI GTSAC 2 cut(s) 791, 823
NspI RCATGY 1 cut(s) 631
NspV TTCGAA 2 cut(s) 63, 194
PceI AGGCCT 1 cut(s) 1005
PciI ACATGT 1 cut(s) 627
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 867, 1215
PfeI GAWTC 2 cut(s) 235, 646
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 3 cut(s) 259, 435, 895
PleI GAGTC 6 cut(s) 2, 38, 62, 673, 890, 1237
PluTI GGCGCC 1 cut(s) 434
PpsI GAGTC 6 cut(s) 2, 38, 62, 673, 890, 1237
PscI ACATGT 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 273, 1012, 1081
PspEI GGTNACC 1 cut(s) 823
PspGI CCWGG 3 cut(s) 273, 1012, 1081
PspN4I GGNNCC 2 cut(s) 432, 493
PspPI GGNCC 1 cut(s) 964
PstNI CAGNNNCTG 2 cut(s) 403, 530
PsuI RGATCY 1 cut(s) 1040
RsaI GTAC 2 cut(s) 56, 740
RsaNI GTAC 2 cut(s) 55, 739
RseI CAYNNNNRTG 3 cut(s) 471, 798, 988
SaqAI TTAA 4 cut(s) 452, 537, 552, 1073
SatI GCNGC 3 cut(s) 258, 434, 894
Sau3AI GATC 6 cut(s) 88, 262, 320, 634, 697, 1040
Sau96I GGNCC 1 cut(s) 964
SchI GAGTC 6 cut(s) 2, 38, 62, 674, 891, 1238
ScrFI CCNGG 6 cut(s) 121, 275, 387, 1014, 1083, 1106
SduI GDGCHC 1 cut(s) 808
SfoI GGCGCC 1 cut(s) 432
SfuI TTCGAA 2 cut(s) 63, 194
SinI GGWCC 1 cut(s) 964
SmiMI CAYNNNNRTG 3 cut(s) 471, 798, 988
SmlI CTYRAG 1 cut(s) 1093
SmoI CTYRAG 1 cut(s) 1093
Sse9I AATT 9 cut(s) 171, 196, 349, 370, 454, 657, 785, 1033, 1237
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 9 cut(s) 75, 109, 141, 154, 208, 214, 258, 418, 434
SspDI GGCGCC 1 cut(s) 430
SspMI CTAG 1 cut(s) 183
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 6 cut(s) 119, 273, 385, 1012, 1081, 1104
StyI CCWWGG 2 cut(s) 182, 704
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 2 cut(s) 38, 1150
TasI AATT 9 cut(s) 171, 196, 349, 370, 454, 657, 785, 1033, 1237
TauI GCSGC 2 cut(s) 260, 436
TfiI GAWTC 2 cut(s) 235, 646
Tru1I TTAA 4 cut(s) 452, 537, 552, 1073
Tru9I TTAA 4 cut(s) 452, 537, 552, 1073
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 791, 823
TseI GCWGC 1 cut(s) 893
Tsp45I GTSAC 2 cut(s) 791, 823
TspDTI ATGAA 4 cut(s) 73, 962, 1208, 1224
TspGWI ACGGA 1 cut(s) 1040
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 964
XapI RAATTY 4 cut(s) 171, 196, 454, 1237
XceI RCATGY 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 867, 1215
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.