pycom04g05610

Belongs to the MT-A70-like family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
5412914 .. 5416074
3161 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05610.3

Sequence Viewer

Length: 1242 bp
ATGGAGGACTCGAAACCAGCCGGCAAGCTATCGACGTTTTTGGACTCCGGCGTGTACCGGTTCGAAGACTCGACCGCCGTTTTCATCGACCCGGTTCGCGTCCTCAACCGCTCCTACACCCGGTTCAGGGTGGCCCCTTCCGCCTACTACTCCCGCTCATTCAAATCCAAAATTCAAGAGCCTAGGGTGTGCTCGAATTCCAGAAAGCGGATGCGGAAGGAGAAGAAGCCTCAGACTCTCAATGACAGAGAACGCGCCGCCGATCAACGCCACCAGGAAGCAAGACCTTTTTTGCTGAAGGCGCATAAATCTCTACTTAGATCAACTGAGCTTTTAGAGGTTGTGAGCAATTTGAGGGATGATTTCGATAATTCAGCTTCGTCTCCCGGCACTACGCAGTCGCTGGTTGAACTCGGGCGGGTCTGGCAGGCGCCGCTGTATGAGATAACTTTAAATTCGCAATCACATGACAATGCAAGCGAAGATGGAGGTTCCCCTGTCATGGAATACTGTAAACAACGAGCAGTCCCTGTGTTTAACAACTTAGTCATTAATGAGACCAGTGAAGATGTGGAGGCTGAACTTTTGGGCAGTCGATATATCTTACCTCCAGAGAGTTCCTTCTACATGTCTGATCTGGGGCAGATTCACAATCTAATTCCTGCAGAGTCTGATTGTGGCTTCAATCTTATTGTTGTTGATCCGCCATGGGAAAATGGAAGTGCGCGTCAAAAGCTGAGGTACTCAACTTTGCCCAACCGATATTTCTTATCCCTTCCCATCAAGCAATTGTGTCACACAAATGGAGCACTTGTTGCTTTATGGGTGACCAACAGGGAGAAGTTGCGTGGCTTTGTCGAGAAGGAACTTTTTCCTGCATGGGGAGTCGAATATGCAGCTACTTTTTTCTGGTTGAAGGTCAAAGCAGATGGTTCTTTGATTGGCGATTTGGACCTCTTTCATCACAGGCCATATGAGTGCCTTCTATTGGGCCTTTGTCCAGGGAAGGCTACGGACGACAATTCAAGATCCAAAACTATACCAGATAATCAAATCATGTTAAGCATACCAGGAGACTACTCAAGGAAGCCCCCGGTAGCAAGATTTTTACAGGAGTATTCTCCGGGACTCCAACGTAGTCGGTGTGTTGAACTATTCGCCAGAGAAATGACTGCCGGATGTGTTTCTTGGGGTAATGAACCCCTTCATTTTCAGGAGTCAGGAAATTTTACGAGGGGGTAG

Protein Analysis

414

Amino Acids

46.86

Weight (kDa)

7.59

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccBSI CCGCTC 2 cut(s) 111, 156
AccII CGCG 3 cut(s) 99, 255, 727
AclWI GGATC 2 cut(s) 695, 1023
AcsI RAATTY 4 cut(s) 171, 196, 454, 1225
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 2 cut(s) 56, 743
AfiI CCNNNNNNNGG 7 cut(s) 120, 126, 127, 207, 502, 881, 988
AflIII ACRYGT 1 cut(s) 627
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 7 cut(s) 163, 176, 410, 685, 916, 1026, 1151
AjnI CCWGG 3 cut(s) 273, 1000, 1069
AjuI GAANNNNNNNTTGG 2 cut(s) 749, 781
AluBI AGCT 5 cut(s) 28, 331, 377, 736, 899
AluI AGCT 5 cut(s) 28, 331, 377, 736, 899
Alw21I GWGCWC 2 cut(s) 194, 811
Alw26I GTCTC 3 cut(s) 387, 551, 1068
AlwI GGATC 2 cut(s) 695, 1023
AlwNI CAGNNNCTG 3 cut(s) 403, 530, 671
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 3 cut(s) 132, 968, 991
ApeKI GCWGC 1 cut(s) 896
ApoI RAATTY 4 cut(s) 171, 196, 454, 1225
AseI ATTAAT 1 cut(s) 552
AsiGI ACCGGT 1 cut(s) 57
Asp700I GAANNNNTTC 2 cut(s) 870, 1203
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 4 cut(s) 257, 304, 433, 727
AspS9I GGNCC 3 cut(s) 133, 952, 991
AsuC2I CCSGG 5 cut(s) 92, 121, 387, 1094, 1125
AsuHPI GGTGA 1 cut(s) 838
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 952
AvrII CCTAGG 1 cut(s) 182
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 194, 811
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 1 cut(s) 908
BccI CCATC 3 cut(s) 479, 788, 923
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 275, 1002, 1071
BcnI CCSGG 5 cut(s) 92, 121, 387, 1094, 1125
BcoDI GTCTC 3 cut(s) 387, 551, 1068
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 434
BisI GCNGC 3 cut(s) 258, 434, 897
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 3 cut(s) 259, 435, 898
Bme1390I CCNGG 8 cut(s) 92, 121, 275, 387, 1002, 1071, 1094, 1125
Bme18I GGWCC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 3 cut(s) 133, 952, 991
BmiI GGNNCC 3 cut(s) 135, 432, 493
BmrFI CCNGG 8 cut(s) 92, 121, 275, 387, 1002, 1071, 1094, 1125
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 1066
BpuMI CCSGG 5 cut(s) 92, 121, 387, 1094, 1125
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 182, 707, 1001, 1092
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 7 cut(s) 120, 126, 127, 207, 502, 881, 988
Bse118I RCCGGY 2 cut(s) 20, 57
Bse1I ACTGG 1 cut(s) 561
BseBI CCWGG 3 cut(s) 275, 1002, 1071
BseDI CCNNGG 4 cut(s) 182, 707, 1001, 1092
BseGI GGATG 3 cut(s) 216, 364, 1184
BseLI CCNNNNNNNGG 7 cut(s) 120, 126, 127, 207, 502, 881, 988
BseMII CTCAG 3 cut(s) 245, 318, 728
BseNI ACTGG 1 cut(s) 561
BseXI GCAGC 1 cut(s) 908
Bsh1236I CGCG 3 cut(s) 99, 255, 727
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 134, 970, 993
BshNI GGYRCC 1 cut(s) 430
BshTI ACCGGT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 194, 811
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 9 cut(s) 21, 48, 58, 92, 121, 387, 1094, 1124, 1176
BslFI GGGAC 2 cut(s) 512, 1140
BslI CCNNNNNNNGG 7 cut(s) 120, 126, 127, 207, 502, 881, 988
BsmAI GTCTC 3 cut(s) 387, 551, 1068
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 2 cut(s) 512, 1140
BsnI GGCC 3 cut(s) 134, 970, 993
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 194, 811
Bsp143I GATC 5 cut(s) 262, 320, 634, 700, 1028
Bsp19I CCATGG 1 cut(s) 707
BspANI GGCC 3 cut(s) 134, 970, 993
BspCNI CTCAG 3 cut(s) 244, 319, 729
BspFNI CGCG 3 cut(s) 99, 255, 727
BspLI GGNNCC 3 cut(s) 135, 432, 493
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 2 cut(s) 695, 1023
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 551
BsrBI CCGCTC 2 cut(s) 111, 156
BsrFI RCCGGY 2 cut(s) 20, 57
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 2 cut(s) 20, 57
BssECI CCNNGG 4 cut(s) 182, 707, 1001, 1092
BssMI GATC 5 cut(s) 262, 320, 634, 700, 1028
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 2 cut(s) 182, 707
Bst2UI CCWGG 3 cut(s) 275, 1002, 1071
Bst4CI ACNGT 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 815
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 22, 26, 429, 478
BstDEI CTNAG 5 cut(s) 231, 317, 327, 544, 737
BstDSI CCRYGG 1 cut(s) 707
BstEII GGTNACC 1 cut(s) 826
BstF5I GGATG 3 cut(s) 216, 364, 1184
BstFNI CGCG 3 cut(s) 99, 255, 727
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 4 cut(s) 257, 304, 433, 727
BstKTI GATC 5 cut(s) 265, 323, 637, 703, 1031
BstMAI GTCTC 3 cut(s) 387, 551, 1068
BstMBI GATC 5 cut(s) 262, 320, 634, 700, 1028
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 6 cut(s) 140, 301, 424, 433, 733, 815
BstNI CCWGG 3 cut(s) 275, 1002, 1071
BstNSI RCATGY 1 cut(s) 631
BstPI GGTNACC 1 cut(s) 826
BstSCI CCNGG 8 cut(s) 90, 119, 273, 385, 1000, 1069, 1092, 1123
BstSFI CTRYAG 1 cut(s) 663
BstUI CGCG 3 cut(s) 99, 255, 727
BstV1I GCAGC 1 cut(s) 908
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 1028
BstYI RGATCY 1 cut(s) 1028
BsuRI GGCC 3 cut(s) 134, 970, 993
BtgI CCRYGG 1 cut(s) 707
BtsCI GGATG 3 cut(s) 216, 364, 1184
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 4 cut(s) 22, 26, 429, 478
CaiI CAGNNNCTG 3 cut(s) 403, 530, 671
CfoI GCGC 4 cut(s) 257, 304, 433, 727
Cfr10I RCCGGY 2 cut(s) 20, 57
Cfr13I GGNCC 3 cut(s) 133, 952, 991
CseI GACGC 2 cut(s) 88, 716
Csp6I GTAC 2 cut(s) 55, 742
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 6 cut(s) 467, 502, 628, 708, 879, 1057
CviQI GTAC 2 cut(s) 55, 742
DdeI CTNAG 5 cut(s) 231, 317, 327, 544, 737
DinI GGCGCC 1 cut(s) 432
DpnI GATC 5 cut(s) 264, 322, 636, 702, 1030
DpnII GATC 5 cut(s) 262, 320, 634, 700, 1028
DraI TTTAAA 1 cut(s) 453
EciI GGCGGA 2 cut(s) 130, 693
Eco130I CCWWGG 2 cut(s) 182, 707
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 952
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 413
Eco91I GGTNACC 1 cut(s) 826
EcoO65I GGTNACC 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 273, 1000, 1069
EcoT14I CCWWGG 2 cut(s) 182, 707
EgeI GGCGCC 1 cut(s) 432
EheI GGCGCC 1 cut(s) 432
ErhI CCWWGG 2 cut(s) 182, 707
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 6 cut(s) 470, 505, 631, 711, 882, 1060
FaqI GGGAC 2 cut(s) 512, 1140
FatI CATG 6 cut(s) 466, 501, 627, 707, 878, 1056
FauI CCCGC 2 cut(s) 161, 411
FauNDI CATATG 1 cut(s) 973
Fnu4HI GCNGC 3 cut(s) 258, 434, 897
FokI GGATG 3 cut(s) 223, 371, 1191
Fsp4HI GCNGC 3 cut(s) 258, 434, 897
FspBI CTAG 1 cut(s) 183
GlaI GCGC 4 cut(s) 256, 303, 432, 726
GluI GCNGC 3 cut(s) 258, 434, 897
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 3 cut(s) 134, 970, 993
HapII CCGG 9 cut(s) 21, 48, 58, 92, 121, 387, 1094, 1124, 1176
HgaI GACGC 2 cut(s) 88, 716
HhaI GCGC 4 cut(s) 257, 304, 433, 727
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 6 cut(s) 470, 505, 631, 711, 882, 1060
Hin6I GCGC 4 cut(s) 255, 302, 431, 725
HinP1I GCGC 4 cut(s) 255, 302, 431, 725
HinfI GANTC 9 cut(s) 8, 44, 68, 235, 646, 668, 885, 1128, 1217
HpaII CCGG 9 cut(s) 21, 48, 58, 92, 121, 387, 1094, 1124, 1176
HphI GGTGA 1 cut(s) 838
Hpy166II GTNNAC 2 cut(s) 55, 515
Hpy188I TCNGA 3 cut(s) 234, 634, 673
Hpy188III TCNNGA 7 cut(s) 176, 201, 611, 859, 1026, 1214, 1221
Hpy8I GTNNAC 2 cut(s) 55, 515
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 2 cut(s) 35, 1135
HpyCH4V TGCA 4 cut(s) 476, 665, 878, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 301, 424, 433, 733, 815
HpyF3I CTNAG 5 cut(s) 231, 317, 327, 544, 737
HpySE526I ACGT 2 cut(s) 35, 1135
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 6 cut(s) 470, 505, 631, 711, 882, 1060
HspAI GCGC 4 cut(s) 255, 302, 431, 725
KasI GGCGCC 1 cut(s) 430
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 5 cut(s) 262, 320, 634, 700, 1028
LmnI GCTCC 2 cut(s) 116, 806
Lsp1109I GCAGC 1 cut(s) 908
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 35, 1135
MaeIII GTNAC 2 cut(s) 794, 826
MalI GATC 5 cut(s) 264, 322, 636, 702, 1030
MbiI CCGCTC 2 cut(s) 111, 156
MboI GATC 5 cut(s) 262, 320, 634, 700, 1028
MboII GAAGA 4 cut(s) 77, 235, 494, 578
MfeI CAATTG 1 cut(s) 788
MflI RGATCY 1 cut(s) 1028
MhlI GDGCHC 2 cut(s) 194, 811
MluCI AATT 9 cut(s) 171, 196, 349, 370, 454, 657, 788, 1021, 1225
Mly113I GGCGCC 1 cut(s) 431
MlyI GAGTC 8 cut(s) 2, 38, 62, 229, 677, 894, 1122, 1226
MmeI TCCRAC 1 cut(s) 1156
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 2 cut(s) 870, 1203
MseI TTAA 4 cut(s) 452, 537, 552, 1061
MslI CAYNNNNRTG 3 cut(s) 471, 801, 976
MspA1I CMGCKG 1 cut(s) 436
MspI CCGG 9 cut(s) 21, 48, 58, 92, 121, 387, 1094, 1124, 1176
MspR9I CCNGG 8 cut(s) 92, 121, 275, 387, 1002, 1071, 1094, 1125
MunI CAATTG 1 cut(s) 788
MvaI CCWGG 3 cut(s) 275, 1002, 1071
MvnI CGCG 3 cut(s) 99, 255, 727
MwoI GCNNNNNNNGC 6 cut(s) 140, 301, 424, 433, 733, 815
NaeI GCCGGC 1 cut(s) 22
NarI GGCGCC 1 cut(s) 431
NciI CCSGG 5 cut(s) 92, 121, 387, 1094, 1125
NcoI CCATGG 1 cut(s) 707
NdeI CATATG 1 cut(s) 973
NdeII GATC 5 cut(s) 262, 320, 634, 700, 1028
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 6 cut(s) 470, 505, 631, 711, 882, 1060
NlaIV GGNNCC 3 cut(s) 135, 432, 493
NmuCI GTSAC 2 cut(s) 794, 826
NspI RCATGY 1 cut(s) 631
NspV TTCGAA 1 cut(s) 63
PciI ACATGT 1 cut(s) 627
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 2 cut(s) 870, 1203
PfeI GAWTC 1 cut(s) 646
PfoI TCCNGGA 1 cut(s) 1123
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 3 cut(s) 259, 435, 898
PleI GAGTC 8 cut(s) 2, 38, 62, 229, 676, 893, 1122, 1225
PluTI GGCGCC 1 cut(s) 434
PpsI GAGTC 8 cut(s) 2, 38, 62, 229, 676, 893, 1122, 1225
PscI ACATGT 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 273, 1000, 1069
PspEI GGTNACC 1 cut(s) 826
PspGI CCWGG 3 cut(s) 273, 1000, 1069
PspN4I GGNNCC 3 cut(s) 135, 432, 493
PspPI GGNCC 3 cut(s) 133, 952, 991
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 3 cut(s) 403, 530, 671
PsuI RGATCY 1 cut(s) 1028
RsaI GTAC 2 cut(s) 56, 743
RsaNI GTAC 2 cut(s) 55, 742
RseI CAYNNNNRTG 3 cut(s) 471, 801, 976
SaqAI TTAA 4 cut(s) 452, 537, 552, 1061
SatI GCNGC 3 cut(s) 258, 434, 897
Sau3AI GATC 5 cut(s) 262, 320, 634, 700, 1028
Sau96I GGNCC 3 cut(s) 133, 952, 991
SchI GAGTC 8 cut(s) 2, 38, 62, 229, 677, 894, 1122, 1226
ScrFI CCNGG 8 cut(s) 92, 121, 275, 387, 1002, 1071, 1094, 1125
SduI GDGCHC 2 cut(s) 194, 811
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 663
SfoI GGCGCC 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 1 cut(s) 952
SmiMI CAYNNNNRTG 3 cut(s) 471, 801, 976
SmlI CTYRAG 1 cut(s) 1081
SmoI CTYRAG 1 cut(s) 1081
Sse9I AATT 9 cut(s) 171, 196, 349, 370, 454, 657, 788, 1021, 1225
SspDI GGCGCC 1 cut(s) 430
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 8 cut(s) 90, 119, 273, 385, 1000, 1069, 1092, 1123
StyI CCWWGG 2 cut(s) 182, 707
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 2 cut(s) 38, 1138
TasI AATT 9 cut(s) 171, 196, 349, 370, 454, 657, 788, 1021, 1225
TauI GCSGC 2 cut(s) 260, 436
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 4 cut(s) 452, 537, 552, 1061
Tru9I TTAA 4 cut(s) 452, 537, 552, 1061
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 794, 826
TseI GCWGC 1 cut(s) 896
Tsp45I GTSAC 2 cut(s) 794, 826
TspDTI ATGAA 4 cut(s) 73, 950, 1196, 1212
TspGWI ACGGA 1 cut(s) 1028
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 952
VspI ATTAAT 1 cut(s) 552
XapI RAATTY 4 cut(s) 171, 196, 454, 1225
XceI RCATGY 1 cut(s) 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 870, 1203
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.