Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010167

Physical Location & Seq

Genomic Coordinates Forward (+)

60432441 .. 60435217

Gene Structure 2777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGTACTCCAAAACCACCGATAAGCTAACCGAGTTTTTGGACTCCGGGATTTACCGGTTCGAGGATTCCAACGCCGTTTTCATCGACCCGGTTCGCGTGCTCAACCGCTCCTACACCCGGTTTAGGGTTTCACCTTCCGCTTACTACTGTCGCCGATTCGACTCCACTTGCCCACCGGAGCCTAGCGTCGCTTCGAATTCCAGAAAGCGAAAGCGGAAGGGGAAGAAGAAGCCTCGGGCTCTGAACGATAGAGAACAAGTCGCCGATCAACGCCACCTGGAAGTGAGACCTTTCTTACTCAAGGCACATGAATCTTTGATCCGAACAAGTGAGGTGTTAGAGGTTATGAGCAATTTGAGGGGTTGTTTGGGTCCTGAAACTTCCTCTCCAGGTGTTGAACAGTCATTTGTTGAACTCGCACAGGTCTGGCAGGCTCCTCTTTACCAGATCACTCTAAACTTCCATACAAATTACAAACAAGGGGAAGATGGAGGCTCCCTTGCTACGCAAGACTGTGAACAATGTGTTCTCCCTGTGTTTAACAACTTGGTCGTTAATGAGAGCAGTAATGATGTGGAGGCTGAAGTTTTGACCAGTCGATATATTTTGCCGCCAAGATCAGATATGGGGCAGATTCACAATCTAATTCCCGCTGAGTCTGATTTTGGCTTCAGTGTTATAGTTGTTGATCCACCATGGGAAAATGGCAGTGCTCGGCAGAAGTCGAGGTACAAAACTTTGCCCAACCGATATTTCTTATCCATTCCTATCAAGCAACTTTGTCACACAGATGGAGCATTTGTCGCCTTATGGGTAACAAATAGGGAGAAGTTGCGTGATTTTGTCGAGAAAGAGCTGTTTCCTGCTTGGGGAGTCACACATGTTGCTACTTTTTTCTGGTTGAAGGTGAAAGCGGACGGTTCCTTGATTTGTGATTTAGACCTGTTTCATCATAGGCCATATGAGTGCCTTCTTGTGGGCATCTGTCATGGGAAGGTTATGAATTCTAAACAGCTATTGGGATCAGATCATATACCAGATAATCAAATTATATTAAGCGTACCGGGGGATTACTCAAGGAAGCCCCCACTAGGAGGATTGTTACAGGAGCTTGCTCCGAGGCTCAAAGGTGGTCGATCCATTGAACTATTTGCTAGAGAAATGACAACCGGATGGGTTTCTTGGGGGAATGAACCCCTTCATTTTCAAGAATCCAGGAATTTTGTAACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009007 GO:0009008 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0032775 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

MT-A70

Protein Analysis

412

Amino Acids

46.92

Weight (kDa)

7.16

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	225 - 399	9.2e-35	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19340
fragaria_vesca	FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230
malus_domestica	MD04G1062700.v1.1
prunus_persica	Prupe.1G383100_v2.0.a1 Prupe.1G383100_v2.0.a1
pyrus_communis	pycom04g05610
rosa_chinensis	RchiOBHm_Chr6g0300531
rosa_laevigata	RLG00000011326
rosa_multiflora	Rmu_sc0001476.1_g000020
rosa_roxburghii	Rroxscaffold_7G00167690
rosa_rugosa	Rorug06G0296900 Rorug06G0296900
rosa_samantha	Rh6AG409500 Rh6BG416700 Rh6CG424400 Rh6DG410000
rosa_wichuraiana	Rw6G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	1 cut(s)	99
AciI	CCGC	6 cut(s)	109, 141, 217, 614, 654, 917
AclWI	GGATC	4 cut(s)	316, 686, 1033, 1134
AcsI	RAATTY	3 cut(s)	199, 1006, 1222
AcuI	CTGAAG	2 cut(s)	606, 658
AfaI	GTAC	3 cut(s)	8, 734, 1065
AfiI	CCNNNNNNNGG	8 cut(s)	64, 120, 126, 127, 872, 979, 1094, 1097
AflIII	ACRYGT	1 cut(s)	883
AgeI	ACCGGT	1 cut(s)	57
AgsI	TTSAA	5 cut(s)	401, 416, 907, 1148, 1211
AjnI	CCWGG	3 cut(s)	279, 391, 1217
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 740, 772
AluBI	AGCT	4 cut(s)	28, 859, 1018, 1114
AluI	AGCT	4 cut(s)	28, 859, 1018, 1114
Alw21I	GWGCWC	2 cut(s)	105, 718
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	4 cut(s)	316, 686, 1033, 1134
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	959
ApoI	RAATTY	3 cut(s)	199, 1006, 1222
AsiGI	ACCGGT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	1200
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	4 cut(s)	49, 92, 121, 1068
AsuHPI	GGTGA	2 cut(s)	126, 922
AsuII	TTCGAA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	244
BarI	GAAGNNNNNNTAC	2 cut(s)	716, 748
Bbv12I	GWGCWC	2 cut(s)	105, 718
BccI	CCATC	3 cut(s)	485, 788, 1170
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	3 cut(s)	281, 393, 1219
BcnI	CCSGG	4 cut(s)	49, 92, 121, 1068
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	3 cut(s)	186, 1094, 1158
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
BmcAI	AGTACT	1 cut(s)	8
Bme1390I	CCNGG	7 cut(s)	49, 92, 121, 281, 393, 1068, 1219
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	5 cut(s)	183, 375, 438, 499, 925
BmrFI	CCNGG	7 cut(s)	49, 92, 121, 281, 393, 1068, 1219
BmsI	GCATC	1 cut(s)	993
BpmI	CTGGAG	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	2 cut(s)	287, 1063
BpuMI	CCSGG	4 cut(s)	49, 92, 121, 1068
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	236, 698, 1067, 1121
BsaWI	WCCGGW	3 cut(s)	57, 178, 1172
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 789, 819
Bsc4I	CCNNNNNNNGG	8 cut(s)	64, 120, 126, 127, 872, 979, 1094, 1097
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	281, 393, 1219
BseDI	CCNNGG	4 cut(s)	236, 698, 1067, 1121
BseGI	GGATG	1 cut(s)	1181
BseLI	CCNNNNNNNGG	8 cut(s)	64, 120, 126, 127, 872, 979, 1094, 1097
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	961
BshTI	ACCGGT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	105, 718
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1067, 1173
BslI	CCNNNNNNNGG	8 cut(s)	64, 120, 126, 127, 872, 979, 1094, 1097
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	961
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	105, 244, 718
Bsp143I	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	6 cut(s)	109, 141, 217, 614, 654, 917
BspANI	GGCC	1 cut(s)	961
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	5 cut(s)	183, 375, 438, 499, 925
BspPI	GGATC	4 cut(s)	316, 686, 1033, 1134
BspT104I	TTCGAA	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	597
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	4 cut(s)	236, 698, 1067, 1121
BssMI	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
BssT1I	CCWWGG	1 cut(s)	698
Bst2UI	CCWGG	3 cut(s)	281, 393, 1219
Bst4CI	ACNGT	4 cut(s)	152, 405, 518, 923
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	101, 435, 1116
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	1181
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	8 cut(s)	271, 324, 453, 623, 694, 1028, 1033, 1142
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstNI	CCWGG	3 cut(s)	281, 393, 1219
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	7 cut(s)	47, 90, 119, 279, 391, 1066, 1217
BstUI	CGCG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	961
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	1 cut(s)	1181
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	2 cut(s)	682, 718
Cac8I	GCNNGC	3 cut(s)	101, 435, 1116
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	7, 733, 1064
CspAI	ACCGGT	1 cut(s)	57
CviAII	CATG	4 cut(s)	311, 699, 884, 992
CviQI	GTAC	3 cut(s)	7, 733, 1064
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	8 cut(s)	270, 323, 452, 622, 693, 1027, 1032, 1141
DpnII	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
Eco130I	CCWWGG	1 cut(s)	698
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	606, 658
Eco88I	CYCGRG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRI	GAATTC	2 cut(s)	199, 1006
EcoRII	CCWGG	3 cut(s)	279, 391, 1217
EcoT14I	CCWWGG	1 cut(s)	698
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	698
FaeI	CATG	4 cut(s)	314, 702, 887, 995
FatI	CATG	4 cut(s)	310, 698, 883, 991
FauI	CCCGC	1 cut(s)	661
FauNDI	CATATG	1 cut(s)	964
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	1 cut(s)	1188
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	614
FspBI	CTAG	3 cut(s)	186, 1094, 1158
GluI	GCNGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	961
HapII	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1067, 1173
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	314, 702, 887, 995
HinfI	GANTC	9 cut(s)	44, 68, 159, 164, 314, 637, 659, 876, 1214
HpaII	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1067, 1173
HphI	GGTGA	2 cut(s)	126, 922
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	6 cut(s)	246, 326, 625, 664, 1030, 1122
Hpy188III	TCNNGA	4 cut(s)	204, 377, 850, 1211
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	6 cut(s)	147, 214, 901, 983, 991, 1211
HpyCH4III	ACNGT	4 cut(s)	152, 405, 518, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	1 cut(s)	657
Hsp92II	CATG	4 cut(s)	314, 702, 887, 995
Kzo9I	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
LmnI	GCTCC	7 cut(s)	116, 181, 442, 503, 797, 1111, 1123
LweI	GCATC	1 cut(s)	993
MaeI	CTAG	3 cut(s)	186, 1094, 1158
MaeIII	GTNAC	5 cut(s)	785, 817, 877, 1104, 1228
MalI	GATC	8 cut(s)	270, 323, 452, 622, 693, 1027, 1032, 1141
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
MboII	GAAGA	3 cut(s)	238, 241, 500
MhlI	GDGCHC	3 cut(s)	105, 244, 718
MluCI	AATT	7 cut(s)	199, 355, 472, 648, 1006, 1050, 1222
MlyI	GAGTC	4 cut(s)	38, 158, 668, 885
MmeI	TCCRAC	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	1200
MseI	TTAA	3 cut(s)	543, 558, 1058
MslI	CAYNNNNRTG	2 cut(s)	792, 967
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	7 cut(s)	48, 58, 92, 121, 179, 1067, 1173
MspR9I	CCNGG	7 cut(s)	49, 92, 121, 281, 393, 1068, 1219
MvaI	CCWGG	3 cut(s)	281, 393, 1219
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	806
NciI	CCSGG	4 cut(s)	49, 92, 121, 1068
NcoI	CCATGG	1 cut(s)	698
NdeI	CATATG	1 cut(s)	964
NdeII	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
NlaIII	CATG	4 cut(s)	314, 702, 887, 995
NlaIV	GGNNCC	5 cut(s)	183, 375, 438, 499, 925
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	2 cut(s)	785, 877
NspI	RCATGY	1 cut(s)	887
NspV	TTCGAA	1 cut(s)	197
PciI	ACATGT	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	1200
PfeI	GAWTC	5 cut(s)	68, 159, 314, 637, 1214
PfoI	TCCNGGA	2 cut(s)	47, 1217
PinAI	ACCGGT	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	615
PleI	GAGTC	4 cut(s)	38, 158, 667, 884
PpsI	GAGTC	4 cut(s)	38, 158, 667, 884
PpuMI	RGGWCCY	1 cut(s)	374
PscI	ACATGT	1 cut(s)	883
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	279, 391, 1217
PspGI	CCWGG	3 cut(s)	279, 391, 1217
PspN4I	GGNNCC	5 cut(s)	183, 375, 438, 499, 925
PspPI	GGNCC	1 cut(s)	374
PspPPI	RGGWCCY	1 cut(s)	374
RsaI	GTAC	3 cut(s)	8, 734, 1065
RsaNI	GTAC	3 cut(s)	7, 733, 1064
RseI	CAYNNNNRTG	2 cut(s)	792, 967
SaqAI	TTAA	3 cut(s)	543, 558, 1058
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	8 cut(s)	268, 321, 450, 620, 691, 1025, 1030, 1139
Sau96I	GGNCC	1 cut(s)	374
ScaI	AGTACT	1 cut(s)	8
SchI	GAGTC	4 cut(s)	38, 158, 668, 885
ScrFI	CCNGG	7 cut(s)	49, 92, 121, 281, 393, 1068, 1219
SduI	GDGCHC	3 cut(s)	105, 244, 718
SfaNI	GCATC	1 cut(s)	993
SfuI	TTCGAA	1 cut(s)	197
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	792, 967
SmlI	CTYRAG	2 cut(s)	302, 1078
SmoI	CTYRAG	2 cut(s)	302, 1078
Sse9I	AATT	7 cut(s)	199, 355, 472, 648, 1006, 1050, 1222
SsiI	CCGC	6 cut(s)	109, 141, 217, 614, 654, 917
SspMI	CTAG	3 cut(s)	186, 1094, 1158
StyD4I	CCNGG	7 cut(s)	47, 90, 119, 279, 391, 1066, 1217
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	4 cut(s)	152, 405, 518, 923
TaqI	TCGA	8 cut(s)	63, 87, 162, 197, 601, 728, 849, 1138
TasI	AATT	7 cut(s)	199, 355, 472, 648, 1006, 1050, 1222
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	5 cut(s)	68, 159, 314, 637, 1214
Tru1I	TTAA	3 cut(s)	543, 558, 1058
Tru9I	TTAA	3 cut(s)	543, 558, 1058
TscAI	CASTG	2 cut(s)	682, 718
TseFI	GTSAC	2 cut(s)	785, 877
Tsp45I	GTSAC	2 cut(s)	785, 877
TspDTI	ATGAA	6 cut(s)	73, 327, 941, 1019, 1193, 1209
TspRI	CASTG	2 cut(s)	682, 718
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	3 cut(s)	199, 1006, 1222
XceI	RCATGY	1 cut(s)	887
XmnI	GAANNNNTTC	1 cut(s)	1200
XspI	CTAG	3 cut(s)	186, 1094, 1158
ZrmI	AGTACT	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.