Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010167

Physical Location & Seq

Genomic Coordinates Reverse (-)

34419027 .. 34422245

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G383100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAGGACTCGAAAACCAGCGATAAGCTATCGGAGTTTTTGGAATCCGGCGTTTACCGGTTGGAAGATTCGAACGCCGTTTTCATCGACCCGGTTCGCGTCCTCAACCGCTCCTACACCCGGTTTAGGGTCTCCCCTTCCGCCTACTACTCTCGCTCATTCGACTCCAAACACGCTGGTCAAGAGGCTAGGGTTTCTTCAAATTTCAGAAAGCGAAAGCGGAAGGAGAAGAAACCTCAGCCTCTCAACGACAGAGAACGAGCCGCCGATCAACGCCATCAGGAAGTGAGACCTTTTTTGCTGAAGGCGCATGAATCTTTAGTTAGAGCAACTGAGCTTTTAGAGGTTGTGAGCAATTTGAAGGGGAATTTGTGTCCTTCAACATCGTCTCCTGGAGCTGAACAGTCACTTGTTGAACTCGGGCGGGTCTGGCAAGCACCGCTCTATGAGATTACTCTGAATTTCCATCCAAATGACAACGCAAGGGAAGATGGAGGTGCCCCTACTATTCAATACGATGAACAACGTGCATTCCCTGTGTTTAACAACTTAGTCGTTAATGAGACCAGTGAAGATGTGGAGGCTGAACTTTTGAATAGTCGATATATCTTACCTCCAGAGAGTTCCTTCTACATGTCTGATCTGGGGCAGATTCACAATCTAATTCCTGCTGAGTCTGATTGCGGCTTCAATCTTATTGTTATTGATCCACCATGGGAAAATGGAAGTGCTCGTCAAAAGCAGAGGTACTCAACTTTGCCTAACCGATATTTCTTATCCCTTCCTGTCAAGCAAATTTGTCATACGGATGGAGCACTTGTTGCTTTATGGGTGACAAATAGAGAGAAGTTGCGTGGTTTTGTTGAGAAAGAGCTATTTCCTGCATGGGGAGTCAAATATGTTGCTACTTTTTTCTGGTTGAAGGTGAAAGCAGATGGTTCGTTGATTTCTGATTTGGACCTCTTTCATCACAGGCCATACGAGTGCCTTCTATTGGGCCTTGTTCATGGGAAGGTTACAGATTCAAAACAGCTATCAAGTACCAAACCTATACTACTGGATAATCAAATCATGTTAAGCATACCGGGAGGTTACTCAAGGAAACCCCCAATTGCAGGATTGTTACATGAGTATGCTCCGAGGCTCCAACGTGGTCGATGTATTGAACTTTTTGCTAGAGAGATGACCGCCGGATGGATTTCTTGGGGGAATGAACCCCTTCATTTTCAGGAGTCCATAAATTTTATGAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009007 GO:0009008 GO:0009987 GO:0016740 GO:0016741 GO:0032259 GO:0032775 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

MT-A70

Protein Analysis

419

Amino Acids

47.73

Weight (kDa)

7.18

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19340
fragaria_vesca	FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230 FvH4_2g40230
malus_domestica	MD04G1062700.v1.1
prunus_persica	Prupe.1G383100_v2.0.a1 Prupe.1G383100_v2.0.a1
pyrus_communis	pycom04g05610
rosa_chinensis	RchiOBHm_Chr6g0300531
rosa_laevigata	RLG00000011326
rosa_multiflora	Rmu_sc0001476.1_g000020
rosa_roxburghii	Rroxscaffold_7G00167690
rosa_rugosa	Rorug06G0296900 Rorug06G0296900
rosa_samantha	Rh6AG409500 Rh6BG416700 Rh6CG424400 Rh6DG410000
rosa_wichuraiana	Rw6G035830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccBSI	CCGCTC	2 cut(s)	111, 442
AccII	CGCG	1 cut(s)	99
AciI	CCGC	8 cut(s)	109, 141, 220, 264, 424, 440, 684, 1188
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	5 cut(s)	202, 367, 460, 795, 1240
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	749, 1042
AfiI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1115, 1194
AflIII	ACRYGT	1 cut(s)	633
AgeI	ACCGGT	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	5 cut(s)	28, 337, 398, 874, 1033
AluI	AGCT	5 cut(s)	28, 337, 398, 874, 1033
Alw21I	GWGCWC	2 cut(s)	733, 817
Alw26I	GTCTC	4 cut(s)	136, 283, 393, 557
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	974, 997
ApoI	RAATTY	5 cut(s)	202, 367, 460, 795, 1240
AsiGI	ACCGGT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	1218
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	958, 997
AsuC2I	CCSGG	3 cut(s)	92, 121, 1086
AsuHPI	GGTGA	2 cut(s)	844, 937
AsuII	TTCGAA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	733, 817
BbvCI	CCTCAGC	1 cut(s)	237
BccI	CCATC	6 cut(s)	285, 474, 485, 803, 929, 1188
BceAI	ACGGC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	921, 955
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	3 cut(s)	92, 121, 1086
BcoDI	GTCTC	4 cut(s)	136, 283, 393, 557
BfaI	CTAG	2 cut(s)	189, 1176
BisI	GCNGC	2 cut(s)	264, 685
BlsI	GCNGC	2 cut(s)	265, 686
Bme1390I	CCNGG	4 cut(s)	92, 121, 393, 1086
Bme18I	GGWCC	1 cut(s)	958
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	958, 997
BmiI	GGNNCC	2 cut(s)	499, 1145
BmrFI	CCNGG	4 cut(s)	92, 121, 393, 1086
BpmI	CTGGAG	2 cut(s)	414, 600
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	1081
BpuMI	CCSGG	3 cut(s)	92, 121, 1086
BsaI	GGTCTC	3 cut(s)	136, 283, 557
BsaJI	CCNNGG	2 cut(s)	713, 1139
BsaWI	WCCGGW	1 cut(s)	57
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 804, 834
Bsc4I	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1115, 1194
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	2 cut(s)	567, 1062
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	713, 1139
BseGI	GGATG	3 cut(s)	466, 814, 1199
BseLI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1115, 1194
BseMII	CTCAG	3 cut(s)	251, 324, 663
BseNI	ACTGG	2 cut(s)	567, 1062
BseSI	GKGCMC	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	976, 999
BshNI	GGYRCC	1 cut(s)	497
BshTI	ACCGGT	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	733, 817
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	6 cut(s)	48, 58, 92, 121, 1085, 1191
BslI	CCNNNNNNNGG	7 cut(s)	120, 126, 127, 887, 994, 1115, 1194
BsmAI	GTCTC	4 cut(s)	136, 283, 393, 557
BsmBI	CGTCTC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	976, 999
Bso31I	GGTCTC	3 cut(s)	136, 283, 557
BsoBI	CYCGRG	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	502, 733, 817
Bsp143I	GATC	3 cut(s)	268, 640, 706
Bsp19I	CCATGG	1 cut(s)	713
BspACI	CCGC	8 cut(s)	109, 141, 220, 264, 424, 440, 684, 1188
BspANI	GGCC	2 cut(s)	976, 999
BspCNI	CTCAG	3 cut(s)	250, 325, 664
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	499, 1145
BspPI	GGATC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	3 cut(s)	136, 283, 557
BsrBI	CCGCTC	2 cut(s)	111, 442
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	567, 1062
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	713, 1139
BssMI	GATC	3 cut(s)	268, 640, 706
BssT1I	CCWWGG	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	237, 333, 550, 672
BstDSI	CCRYGG	1 cut(s)	713
BstF5I	GGATG	3 cut(s)	466, 814, 1199
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	271, 643, 709
BstMAI	GTCTC	4 cut(s)	136, 283, 393, 557
BstMBI	GATC	3 cut(s)	268, 640, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 430, 439, 821
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	4 cut(s)	90, 119, 391, 1084
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	976, 999
BtgI	CCRYGG	1 cut(s)	713
BtsCI	GGATG	3 cut(s)	466, 814, 1199
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	958, 997
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	748, 1041
CspAI	ACCGGT	1 cut(s)	57
CviAII	CATG	7 cut(s)	311, 634, 714, 885, 1007, 1072, 1127
CviQI	GTAC	2 cut(s)	748, 1041
DdeI	CTNAG	4 cut(s)	237, 333, 550, 672
DpnI	GATC	3 cut(s)	270, 642, 708
DpnII	GATC	3 cut(s)	268, 640, 706
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	713
Eco31I	GGTCTC	3 cut(s)	136, 283, 557
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	713
ErhI	CCWWGG	1 cut(s)	713
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	7 cut(s)	314, 637, 717, 888, 1010, 1075, 1130
FatI	CATG	7 cut(s)	310, 633, 713, 884, 1006, 1071, 1126
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	264, 685
FokI	GGATG	3 cut(s)	453, 821, 1206
Fsp4HI	GCNGC	2 cut(s)	264, 685
FspBI	CTAG	2 cut(s)	189, 1176
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	2 cut(s)	264, 685
GsuI	CTGGAG	2 cut(s)	414, 600
HaeIII	GGCC	2 cut(s)	976, 999
HapII	CCGG	6 cut(s)	48, 58, 92, 121, 1085, 1191
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	7 cut(s)	314, 637, 717, 888, 1010, 1075, 1130
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HpaII	CCGG	6 cut(s)	48, 58, 92, 121, 1085, 1191
HphI	GGTGA	2 cut(s)	844, 937
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	7 cut(s)	34, 209, 459, 640, 679, 952, 1140
Hpy188III	TCNNGA	4 cut(s)	182, 281, 617, 1229
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	2 cut(s)	526, 1150
HpyCH4V	TGCA	3 cut(s)	530, 884, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 430, 439, 821
HpyF3I	CTNAG	4 cut(s)	237, 333, 550, 672
HpySE526I	ACGT	2 cut(s)	526, 1150
Hsp92II	CATG	7 cut(s)	314, 637, 717, 888, 1010, 1075, 1130
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	268, 640, 706
LmnI	GCTCC	5 cut(s)	116, 395, 812, 1141, 1149
MaeI	CTAG	2 cut(s)	189, 1176
MaeII	ACGT	2 cut(s)	526, 1150
MaeIII	GTNAC	5 cut(s)	405, 832, 1015, 1091, 1122
MalI	GATC	3 cut(s)	270, 642, 708
MbiI	CCGCTC	2 cut(s)	111, 442
MboI	GATC	3 cut(s)	268, 640, 706
MboII	GAAGA	5 cut(s)	77, 189, 241, 500, 584
MfeI	CAATTG	1 cut(s)	1110
MhlI	GDGCHC	3 cut(s)	502, 733, 817
MluCI	AATT	8 cut(s)	202, 355, 367, 460, 663, 795, 1110, 1240
MlyI	GAGTC	5 cut(s)	2, 158, 683, 900, 1241
MmeI	TCCRAC	2 cut(s)	42, 1171
MroXI	GAANNNNTTC	1 cut(s)	1218
MseI	TTAA	3 cut(s)	543, 558, 1076
MslI	CAYNNNNRTG	4 cut(s)	471, 807, 982, 1131
MspI	CCGG	6 cut(s)	48, 58, 92, 121, 1085, 1191
MspR9I	CCNGG	4 cut(s)	92, 121, 393, 1086
MunI	CAATTG	1 cut(s)	1110
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	307, 430, 439, 821
NciI	CCSGG	3 cut(s)	92, 121, 1086
NcoI	CCATGG	1 cut(s)	713
NdeII	GATC	3 cut(s)	268, 640, 706
NlaIII	CATG	7 cut(s)	314, 637, 717, 888, 1010, 1075, 1130
NlaIV	GGNNCC	2 cut(s)	499, 1145
NmuCI	GTSAC	2 cut(s)	405, 832
NspI	RCATGY	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	71
PciI	ACATGT	1 cut(s)	633
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	1218
PfeI	GAWTC	5 cut(s)	44, 68, 314, 652, 1022
PfoI	TCCNGGA	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	265, 686
PleI	GAGTC	5 cut(s)	2, 158, 682, 899, 1240
PpsI	GAGTC	5 cut(s)	2, 158, 682, 899, 1240
PscI	ACATGT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	499, 1145
PspPI	GGNCC	2 cut(s)	958, 997
RsaI	GTAC	2 cut(s)	749, 1042
RsaNI	GTAC	2 cut(s)	748, 1041
RseI	CAYNNNNRTG	4 cut(s)	471, 807, 982, 1131
SaqAI	TTAA	3 cut(s)	543, 558, 1076
SatI	GCNGC	2 cut(s)	264, 685
Sau3AI	GATC	3 cut(s)	268, 640, 706
Sau96I	GGNCC	2 cut(s)	958, 997
SchI	GAGTC	5 cut(s)	2, 158, 683, 900, 1241
ScrFI	CCNGG	4 cut(s)	92, 121, 393, 1086
SduI	GDGCHC	3 cut(s)	502, 733, 817
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	4 cut(s)	471, 807, 982, 1131
SmlI	CTYRAG	1 cut(s)	1096
SmoI	CTYRAG	1 cut(s)	1096
Sse9I	AATT	8 cut(s)	202, 355, 367, 460, 663, 795, 1110, 1240
SsiI	CCGC	8 cut(s)	109, 141, 220, 264, 424, 440, 684, 1188
SspMI	CTAG	2 cut(s)	189, 1176
StyD4I	CCNGG	4 cut(s)	90, 119, 391, 1084
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	2 cut(s)	529, 1153
TaqI	TCGA	6 cut(s)	11, 71, 87, 162, 601, 1156
TasI	AATT	8 cut(s)	202, 355, 367, 460, 663, 795, 1110, 1240
TauI	GCSGC	2 cut(s)	266, 687
TfiI	GAWTC	5 cut(s)	44, 68, 314, 652, 1022
Tru1I	TTAA	3 cut(s)	543, 558, 1076
Tru9I	TTAA	3 cut(s)	543, 558, 1076
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	2 cut(s)	405, 832
Tsp45I	GTSAC	2 cut(s)	405, 832
TspDTI	ATGAA	7 cut(s)	73, 327, 534, 956, 995, 1211, 1227
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	958
XapI	RAATTY	5 cut(s)	202, 367, 460, 795, 1240
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	1218
XspI	CTAG	2 cut(s)	189, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.