Rh6BG416700

Belongs to the MT-A70-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010167
Physical Location & Seq
Forward (+)
64187313 .. 64190306
2994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG416700.1

Sequence Viewer

Length: 960 bp
ATGGAGTACTCCAAAACCACCGATAAGCTAACCGAGTTTTTGGACTCCGGGATTTACCGGTTCGAAGATTCCAACGCCGTTTTCATCGACCCGGTTCGCGTGCTCAACCGCTCCTACACCCGGTTTAGGGTTTCACCTTCCGCTTACTACTGTCGCCGATTCGACTCCACTTGCCCACCGGAGCCTAGCGTCGCTTCGAATTCCAGGAAGCGAAAGCGGAAGGAGAAGAAGAAGAAGAAGCCTCGGGCTCTGAACGAAAGAGAACAAGTCGCCGATCAACGCCACCAGGAAGTGAGACCTTTCTTACTGAAGGCACATGAATCTTTGATCCGAACAAGTGAGGTGTTAGAGGTTATGAGCAATTTGAGGGGTTGTTTGGGTCCTGAAACTTCCTCTCCAGGTGTTGAACAGTCATTTGTTGAACTCGCACAGGTCTGGCAGGCCCCTCTTTACGAGATTACTCTAAACTTCCATACAAATTACAAAGAAGGGGAAGATGGAGGCTCCCTTGCTACGCAAGACTGTGAACAATGTGTTCTCCCTGTGTTTAACAACTTGGTCGTTAATGAGAGCAGTAATGATGTGGAGGCTGAAGTTTTGACCAGTAGATATATTTTGCCTCCGAAGAGTTCCTTCTACATGTCAGATATGGGGCAGATTCACAATCTAATTCCTGCTGAGTCTGATTTTGGCTTCAGTGTTATAGTTGTTGATCCACCATGGGAAAATGGCAGTGCTCGGCAGAAGTCGAGGTACAAAACTTTGCCCAACCGATATTTCTTATCCATTCCGATCAAGCAACTTTGTCACACAGATGGAGCATTTGTCGCCTTATGGGTAACAAATAGGGAGAAGTTGCGTGATTTTGTCGAGAAAGAGCTGTTTCCTGCTTGGGGAGTCACACATGTTGCTACTTTTTTCTGGTTGAAGGTTCTCATGTCTGTTTCTCTTTTTGTGTAG

Protein Analysis

319

Amino Acids

36.67

Weight (kDa)

7.61

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MT-A70 PF05063 232 - 311 8.1e-18 MT-A70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 1 cut(s) 99
AciI CCGC 3 cut(s) 109, 141, 217
AclWI GGATC 2 cut(s) 322, 707
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 3 cut(s) 329, 612, 679
AfaI GTAC 2 cut(s) 8, 755
AfiI CCNNNNNNNGG 4 cut(s) 120, 126, 127, 893
AflIII ACRYGT 2 cut(s) 639, 904
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 3 cut(s) 407, 422, 928
AjnI CCWGG 3 cut(s) 203, 285, 397
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 761, 793
AluBI AGCT 2 cut(s) 28, 880
AluI AGCT 2 cut(s) 28, 880
Alw21I GWGCWC 2 cut(s) 105, 739
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 322, 707
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 1 cut(s) 441
ApoI RAATTY 1 cut(s) 199
AsiGI ACCGGT 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 380, 442
AsuC2I CCSGG 3 cut(s) 49, 92, 121
AsuHPI GGTGA 1 cut(s) 126
AsuII TTCGAA 2 cut(s) 63, 197
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
Bbv12I GWGCWC 2 cut(s) 105, 739
BccI CCATC 2 cut(s) 491, 809
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 205, 287, 399
BcnI CCSGG 3 cut(s) 49, 92, 121
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 6 cut(s) 49, 92, 121, 205, 287, 399
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 2 cut(s) 380, 442
BmiI GGNNCC 4 cut(s) 183, 381, 444, 505
BmrFI CCNGG 6 cut(s) 49, 92, 121, 205, 287, 399
BpmI CTGGAG 1 cut(s) 381
Bpu14I TTCGAA 2 cut(s) 63, 197
BpuMI CCSGG 3 cut(s) 49, 92, 121
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 242, 719
BsaWI WCCGGW 2 cut(s) 57, 178
BsaXI ACNNNNNCTCC 4 cut(s) 379, 409, 810, 840
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 126, 127, 893
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 603
BseBI CCWGG 3 cut(s) 205, 287, 399
BseDI CCNNGG 2 cut(s) 242, 719
BseLI CCNNNNNNNGG 4 cut(s) 120, 126, 127, 893
BseMII CTCAG 1 cut(s) 669
BseNI ACTGG 1 cut(s) 603
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 443
BshTI ACCGGT 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 105, 739
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 5 cut(s) 48, 58, 92, 121, 179
BslI CCNNNNNNNGG 4 cut(s) 120, 126, 127, 893
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 243
Bsp119I TTCGAA 2 cut(s) 63, 197
Bsp1286I GDGCHC 3 cut(s) 105, 250, 739
Bsp143I GATC 4 cut(s) 274, 327, 712, 792
Bsp19I CCATGG 1 cut(s) 719
BspACI CCGC 3 cut(s) 109, 141, 217
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 670
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 4 cut(s) 183, 381, 444, 505
BspPI GGATC 2 cut(s) 322, 707
BspT104I TTCGAA 2 cut(s) 63, 197
BspTNI GGTCTC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 1 cut(s) 603
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 242, 719
BssMI GATC 4 cut(s) 274, 327, 712, 792
BssT1I CCWWGG 1 cut(s) 719
Bst2UI CCWGG 3 cut(s) 205, 287, 399
Bst4CI ACNGT 3 cut(s) 152, 411, 524
Bst6I CTCTTC 1 cut(s) 620
BstBI TTCGAA 2 cut(s) 63, 197
BstC8I GCNNGC 2 cut(s) 101, 441
BstDEI CTNAG 1 cut(s) 678
BstDSI CCRYGG 1 cut(s) 719
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 4 cut(s) 277, 330, 715, 795
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 4 cut(s) 274, 327, 712, 792
BstMWI GCNNNNNNNGC 1 cut(s) 827
BstNI CCWGG 3 cut(s) 205, 287, 399
BstNSI RCATGY 2 cut(s) 643, 908
BstSCI CCNGG 6 cut(s) 47, 90, 119, 203, 285, 397
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 719
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 703, 739
Cac8I GCNNGC 2 cut(s) 101, 441
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 380, 442
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 7, 754
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 5 cut(s) 317, 640, 720, 905, 937
CviJI RGCY 9 cut(s) 28, 184, 241, 248, 443, 504, 590, 693, 880
CviKI_1 RGCY 9 cut(s) 28, 184, 241, 248, 443, 504, 590, 693, 880
CviQI GTAC 2 cut(s) 7, 754
DdeI CTNAG 1 cut(s) 678
DpnI GATC 4 cut(s) 276, 329, 714, 794
DpnII GATC 4 cut(s) 274, 327, 712, 792
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 719
Eco24I GRGCYC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 380
Eco57I CTGAAG 3 cut(s) 329, 612, 679
Eco88I CYCGRG 1 cut(s) 243
EcoO109I RGGNCCY 2 cut(s) 380, 442
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 203, 285, 397
EcoT14I CCWWGG 1 cut(s) 719
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 719
FaeI CATG 5 cut(s) 320, 643, 723, 908, 940
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FatI CATG 5 cut(s) 316, 639, 719, 904, 936
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 443
HapII CCGG 5 cut(s) 48, 58, 92, 121, 179
HgaI GACGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 320, 643, 723, 908, 940
HinfI GANTC 8 cut(s) 44, 68, 159, 164, 320, 658, 680, 897
HpaII CCGG 5 cut(s) 48, 58, 92, 121, 179
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 6 cut(s) 252, 332, 624, 646, 685, 792
Hpy188III TCNNGA 2 cut(s) 383, 871
Hpy8I GTNNAC 1 cut(s) 527
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 6 cut(s) 147, 214, 304, 482, 643, 922
HpyCH4III ACNGT 3 cut(s) 152, 411, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 827
HpyF3I CTNAG 1 cut(s) 678
Hsp92II CATG 5 cut(s) 320, 643, 723, 908, 940
Kzo9I GATC 4 cut(s) 274, 327, 712, 792
LmnI GCTCC 4 cut(s) 116, 181, 509, 818
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 806, 838, 898
MalI GATC 4 cut(s) 276, 329, 714, 794
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 274, 327, 712, 792
MboII GAAGA 7 cut(s) 77, 238, 241, 244, 247, 506, 637
MhlI GDGCHC 3 cut(s) 105, 250, 739
MluCI AATT 4 cut(s) 199, 361, 478, 669
MlyI GAGTC 4 cut(s) 38, 158, 689, 906
MmeI TCCRAC 1 cut(s) 96
MseI TTAA 2 cut(s) 549, 564
MslI CAYNNNNRTG 1 cut(s) 813
MspI CCGG 5 cut(s) 48, 58, 92, 121, 179
MspR9I CCNGG 6 cut(s) 49, 92, 121, 205, 287, 399
MvaI CCWGG 3 cut(s) 205, 287, 399
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 827
NciI CCSGG 3 cut(s) 49, 92, 121
NcoI CCATGG 1 cut(s) 719
NdeII GATC 4 cut(s) 274, 327, 712, 792
NlaIII CATG 5 cut(s) 320, 643, 723, 908, 940
NlaIV GGNNCC 4 cut(s) 183, 381, 444, 505
NmeAIII GCCGAG 1 cut(s) 718
NmuCI GTSAC 2 cut(s) 806, 898
NspI RCATGY 2 cut(s) 643, 908
NspV TTCGAA 2 cut(s) 63, 197
PciI ACATGT 2 cut(s) 639, 904
PfeI GAWTC 4 cut(s) 68, 159, 320, 658
PfoI TCCNGGA 2 cut(s) 47, 203
PinAI ACCGGT 1 cut(s) 57
PleI GAGTC 4 cut(s) 38, 158, 688, 905
PpsI GAGTC 4 cut(s) 38, 158, 688, 905
PpuMI RGGWCCY 1 cut(s) 380
PscI ACATGT 2 cut(s) 639, 904
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 3 cut(s) 203, 285, 397
PspGI CCWGG 3 cut(s) 203, 285, 397
PspN4I GGNNCC 4 cut(s) 183, 381, 444, 505
PspPI GGNCC 2 cut(s) 380, 442
PspPPI RGGWCCY 1 cut(s) 380
RsaI GTAC 2 cut(s) 8, 755
RsaNI GTAC 2 cut(s) 7, 754
RseI CAYNNNNRTG 1 cut(s) 813
SaqAI TTAA 2 cut(s) 549, 564
Sau3AI GATC 4 cut(s) 274, 327, 712, 792
Sau96I GGNCC 2 cut(s) 380, 442
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 4 cut(s) 38, 158, 689, 906
ScrFI CCNGG 6 cut(s) 49, 92, 121, 205, 287, 399
SduI GDGCHC 3 cut(s) 105, 250, 739
SfuI TTCGAA 2 cut(s) 63, 197
SinI GGWCC 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 813
Sse9I AATT 4 cut(s) 199, 361, 478, 669
SsiI CCGC 3 cut(s) 109, 141, 217
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 6 cut(s) 47, 90, 119, 203, 285, 397
StyI CCWWGG 1 cut(s) 719
TaaI ACNGT 3 cut(s) 152, 411, 524
TaqI TCGA 6 cut(s) 63, 87, 162, 197, 749, 870
TasI AATT 4 cut(s) 199, 361, 478, 669
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 4 cut(s) 68, 159, 320, 658
Tru1I TTAA 2 cut(s) 549, 564
Tru9I TTAA 2 cut(s) 549, 564
TscAI CASTG 2 cut(s) 703, 739
TseFI GTSAC 2 cut(s) 806, 898
Tsp45I GTSAC 2 cut(s) 806, 898
TspDTI ATGAA 2 cut(s) 73, 333
TspRI CASTG 2 cut(s) 703, 739
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 1 cut(s) 199
XceI RCATGY 2 cut(s) 643, 908
XspI CTAG 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.