AT1G19690

NAD dependent epimerase/dehydratase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011258
Physical Location & Seq
Reverse (-)
6807715 .. 6809642
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19690.1

Sequence Viewer

Length: 1059 bp
ATGGCGGTTTTTCAGTTACCAAGTTTGTCACCGGAGATTCCTTTCCGTTTTACTCCCACACCACTTAAATTTTCAAATCGTAGGAGAATCAACTTTTTCCGGCCATTATCAGCAACCGACGATTCTCGATCCGGTGCACCAGATCCAGAATCGCCGAACCAAATGTTCATTCTCGGGATGGGATTCGTCGGAGGTTTTTTTGCGCAACAGCTCAAAGAATCAGACTGGGTGGTTTCAGGGACTTGCAGGAGTGATTCTAAGAAGAAAGAATGGGAAAAGAGAGGAATTAATCTTCATCCATTTTCTGCAGACTCACCTGAATGGAGCTTGCTAGATTCAGTGAAAGATTACACTCATCTACTCATTTCCATTCCTCCTTTAGCTGACATTGGTGATCCGATGTTGCGGAATGTAGAACTTGTGAGAGACAAGCTTTCGAGTGGAAATCTTCGATGGCTTTGTTATCTCTCATCAACAAGTGTGTATGGAGATTGTGGTGGTGCGTGGGTCAATGAAAATCATCTCCCAAATCCTAAAACTCAGTCAGCCAAAGTGAGATTAGCTGCAGAACAAGGATGGTTAAGCTTGGGTCGTGATCTTGGGGTTTCGACTCAAATACTTCGACTTGGGGGTATTTATGGACCTGGTCGAAGTGCAATTGATACCTTGTTAAAGCAGGAGCGTTTGTCTGAAGGTCAAAAGAGAAGAGCGTCCCGTAAATTCACGTCGAGAGTTCATGTTGAAGATATATGCCAAGTTCTTAAAGCTGCCACTGAAAAGCCAGCATCAGGGGAGATCTACAATATTGTTGATGATGATCCGGCAGCAAGAGAAGAGGTGTTTGAATATGCCTTGGAGTTGATCGAGAAACGTTGGCCGGGGAATATCACCACAAAACCATTTCCATTTCTGTATGAATCTCGGGAGGAAAGTTCATTGAGAGGCGAGAAACGAGTCTGCAACGAACGCATGAAGGATAAACTAGGAGTGAAATTGTTATATCCTTCGTATAAGTCAGGACTGCAAAGCATAGTCGAGAACATGGACAACCGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

352

Amino Acids

39.75

Weight (kDa)

8.68

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 57 - 269 1.1e-07 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19690
fragaria_vesca FvH4_2g39320
malus_domestica MD08G1024600.v1.1
prunus_persica Prupe.1G374300_v2.0.a1
pyrus_communis pycom02g18430 pycom08g01950 pycom15g37000
rosa_chinensis RchiOBHm_Chr6g0301681
rosa_laevigata RLG00000011232
rosa_multiflora Rmu_sc0023062.1_g000003 Rmu_sc0034934.1_g000006 Rmu_sc0043116.1_g000002
rosa_roxburghii Rroxscaffold_7G00166530
rosa_rugosa Rorug06G0308000
rosa_samantha Rh6AG420600 Rh6BG427100 Rh6BG427200 Rh6CG433800 Rh6DG420500
rosa_wichuraiana Rw6G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AciI CCGC 2 cut(s) 5, 406
AclI AACGTT 1 cut(s) 871
AclWI GGATC 4 cut(s) 123, 137, 389, 812
AcoI YGGCCR 2 cut(s) 101, 875
AcsI RAATTY 2 cut(s) 68, 719
AcuI CTGAAG 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 788
AgsI TTSAA 3 cut(s) 75, 743, 845
AjiI CACGTC 1 cut(s) 726
AjnI CCWGG 1 cut(s) 643
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 7 cut(s) 211, 327, 383, 433, 563, 585, 767
AluI AGCT 7 cut(s) 211, 327, 383, 433, 563, 585, 767
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 420
Alw44I GTGCAC 1 cut(s) 135
AlwI GGATC 4 cut(s) 123, 137, 389, 812
Ama87I CYCGRG 2 cut(s) 173, 921
AoxI GGCC 2 cut(s) 101, 875
ApaLI GTGCAC 1 cut(s) 135
ApeKI GCWGC 3 cut(s) 563, 767, 824
ApoI RAATTY 2 cut(s) 68, 719
AseI ATTAAT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 641
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 4 cut(s) 21, 306, 404, 880
AvaI CYCGRG 2 cut(s) 173, 921
AvaII GGWCC 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 550, 754, 836
BccI CCATC 3 cut(s) 172, 447, 570
BciT130I CCWGG 1 cut(s) 645
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 420
BfaI CTAG 2 cut(s) 332, 983
BfmI CTRYAG 2 cut(s) 306, 564
BglII AGATCT 1 cut(s) 795
BisI GCNGC 3 cut(s) 564, 768, 825
BlsI GCNGC 3 cut(s) 565, 769, 826
Bme1390I CCNGG 2 cut(s) 645, 879
Bme18I GGWCC 1 cut(s) 641
BmeT110I CYCGRG 2 cut(s) 173, 921
BmgBI CACGTC 1 cut(s) 726
BmgT120I GGNCC 1 cut(s) 641
BmrFI CCNGG 2 cut(s) 645, 879
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 794
BmuI ACTGGG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 2 cut(s) 852, 878
BsaWI WCCGGW 2 cut(s) 31, 131
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 852, 878
BseGI GGATG 3 cut(s) 183, 295, 581
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 3 cut(s) 550, 754, 836
BshFI GGCC 2 cut(s) 103, 877
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 173, 921
BsiSI CCGG 5 cut(s) 32, 100, 132, 821, 878
BslFI GGGAC 2 cut(s) 253, 697
BslI CCNNNNNNNGG 1 cut(s) 788
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 2 cut(s) 253, 697
BsnI GGCC 2 cut(s) 103, 877
BsoBI CYCGRG 2 cut(s) 173, 921
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
BspACI CCGC 2 cut(s) 5, 406
BspANI GGCC 2 cut(s) 103, 877
BspCNI CTCAG 1 cut(s) 553
BspMAI CTGCAG 2 cut(s) 310, 568
BspPI GGATC 4 cut(s) 123, 137, 389, 812
BspQI GCTCTTC 1 cut(s) 700
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 852, 878
BssMI GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 1 cut(s) 1052
Bst6I CTCTTC 2 cut(s) 700, 828
BstC8I GCNNGC 2 cut(s) 329, 783
BstDEI CTNAG 2 cut(s) 258, 540
BstF5I GGATG 3 cut(s) 183, 295, 581
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 7 cut(s) 131, 145, 397, 598, 798, 820, 864
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
BstMWI GCNNNNNNNGC 1 cut(s) 966
BstNI CCWGG 1 cut(s) 645
BstSCI CCNGG 2 cut(s) 643, 877
BstSFI CTRYAG 2 cut(s) 306, 564
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 3 cut(s) 550, 754, 836
BstX2I RGATCY 2 cut(s) 142, 795
BstYI RGATCY 2 cut(s) 142, 795
BsuRI GGCC 2 cut(s) 103, 877
BtrI CACGTC 1 cut(s) 726
BtsCI GGATG 3 cut(s) 183, 295, 581
BtsIMutI CAGTG 2 cut(s) 345, 771
Cac8I GCNNGC 2 cut(s) 329, 783
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 641
CseI GACGC 1 cut(s) 699
CsiI ACCWGGT 1 cut(s) 643
CviAII CATG 3 cut(s) 737, 970, 1042
DdeI CTNAG 2 cut(s) 258, 540
DpnI GATC 7 cut(s) 130, 144, 396, 597, 797, 819, 863
DpnII GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
EaeI YGGCCR 2 cut(s) 101, 875
Eam1104I CTCTTC 2 cut(s) 700, 828
EarI CTCTTC 2 cut(s) 700, 828
Eco130I CCWWGG 1 cut(s) 852
Eco47I GGWCC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 711
Eco88I CYCGRG 2 cut(s) 173, 921
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 3 cut(s) 740, 973, 1045
FaqI GGGAC 2 cut(s) 253, 697
FatI CATG 3 cut(s) 736, 969, 1041
Fnu4HI GCNGC 3 cut(s) 564, 768, 825
FokI GGATG 3 cut(s) 190, 282, 588
Fsp4HI GCNGC 3 cut(s) 564, 768, 825
FspBI CTAG 2 cut(s) 332, 983
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 1 cut(s) 204
GluI GCNGC 3 cut(s) 564, 768, 825
HaeIII GGCC 2 cut(s) 103, 877
HapII CCGG 5 cut(s) 32, 100, 132, 821, 878
HgaI GACGC 1 cut(s) 699
HhaI GCGC 1 cut(s) 205
Hin1II CATG 3 cut(s) 740, 973, 1045
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HindIII AAGCTT 2 cut(s) 431, 583
HpaII CCGG 5 cut(s) 32, 100, 132, 821, 878
HphI GGTGA 4 cut(s) 21, 306, 404, 880
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 4 cut(s) 191, 223, 399, 691
Hpy188III TCNNGA 9 cut(s) 126, 146, 175, 593, 729, 865, 923, 1017, 1036
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 3 cut(s) 122, 191, 730
HpyAV CCTTC 3 cut(s) 686, 967, 1014
HpyCH4III ACNGT 1 cut(s) 1052
HpyCH4IV ACGT 2 cut(s) 725, 871
HpyCH4V TGCA 7 cut(s) 137, 246, 308, 566, 656, 960, 1024
HpyF10VI GCNNNNNNNGC 1 cut(s) 966
HpyF3I CTNAG 2 cut(s) 258, 540
HpySE526I ACGT 2 cut(s) 725, 871
Hsp92II CATG 3 cut(s) 740, 973, 1045
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
LguI GCTCTTC 1 cut(s) 700
LmnI GCTCC 2 cut(s) 324, 679
Lsp1109I GCAGC 3 cut(s) 550, 754, 836
LweI GCATC 1 cut(s) 794
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 2 cut(s) 332, 983
MaeII ACGT 2 cut(s) 725, 871
MaeIII GTNAC 2 cut(s) 15, 27
MalI GATC 7 cut(s) 130, 144, 396, 597, 797, 819, 863
MboI GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
MboII GAAGA 6 cut(s) 274, 284, 440, 717, 755, 845
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 142, 795
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 5 cut(s) 68, 285, 657, 719, 992
MlyI GAGTC 3 cut(s) 305, 604, 963
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 6 cut(s) 185, 275, 384, 829, 919, 935
MseI TTAA 5 cut(s) 66, 288, 581, 671, 762
MslI CAYNNNNRTG 1 cut(s) 319
MspI CCGG 5 cut(s) 32, 100, 132, 821, 878
MspR9I CCNGG 2 cut(s) 645, 879
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 966
NciI CCSGG 1 cut(s) 879
NdeII GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
NlaIII CATG 3 cut(s) 740, 973, 1045
NmuCI GTSAC 1 cut(s) 27
NsbI TGCGCA 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 700
PfeI GAWTC 9 cut(s) 37, 87, 122, 149, 183, 218, 254, 335, 917
PflFI GACNNNGTC 1 cut(s) 645
PkrI GCNGC 3 cut(s) 565, 769, 826
PleI GAGTC 3 cut(s) 305, 604, 962
PpsI GAGTC 3 cut(s) 305, 604, 962
PshBI ATTAAT 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 871
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspPI GGNCC 1 cut(s) 641
PstI CTGCAG 2 cut(s) 310, 568
PsuI RGATCY 2 cut(s) 142, 795
PsyI GACNNNGTC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 700
SaqAI TTAA 5 cut(s) 66, 288, 581, 671, 762
SatI GCNGC 3 cut(s) 564, 768, 825
Sau3AI GATC 7 cut(s) 128, 142, 394, 595, 795, 817, 861
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 3 cut(s) 305, 604, 963
ScrFI CCNGG 2 cut(s) 645, 879
SduI GDGCHC 1 cut(s) 139
SexAI ACCWGGT 1 cut(s) 643
SfaNI GCATC 1 cut(s) 794
SfcI CTRYAG 2 cut(s) 306, 564
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 319
Sse9I AATT 5 cut(s) 68, 285, 657, 719, 992
SsiI CCGC 2 cut(s) 5, 406
SspI AATATT 1 cut(s) 805
SspMI CTAG 2 cut(s) 332, 983
StyD4I CCNGG 2 cut(s) 643, 877
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 1 cut(s) 1052
TaiI ACGT 2 cut(s) 728, 874
TaqI TCGA 9 cut(s) 127, 437, 451, 608, 622, 649, 728, 864, 1035
TasI AATT 5 cut(s) 68, 285, 657, 719, 992
TfiI GAWTC 9 cut(s) 37, 87, 122, 149, 183, 218, 254, 335, 917
Tru1I TTAA 5 cut(s) 66, 288, 581, 671, 762
Tru9I TTAA 5 cut(s) 66, 288, 581, 671, 762
TscAI CASTG 2 cut(s) 345, 778
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 3 cut(s) 563, 767, 824
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 7 cut(s) 157, 284, 528, 725, 924, 930, 986
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 2 cut(s) 345, 778
Tth111I GACNNNGTC 1 cut(s) 645
VneI GTGCAC 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 641
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 2 cut(s) 68, 719
XspI CTAG 2 cut(s) 332, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.