Rh6AG420600

dTDP-glucose 4,6-dehydratase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011258
Physical Location & Seq
Reverse (-)
61404271 .. 61406633
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG420600.1

Sequence Viewer

Length: 909 bp
ATGGAGTTGTGTCAAATTTCGGGTCAATTGGCATTCAAATCGGGTCATCTGCCCCCAAGCTCTGTCATTCGAATGACCTGTGCACCGGACGTAAAATCTCGGAACCGGATGTTCATCGCCGGAATGGGTTTCGTCGGACAGGCGTTGACGCTTGCCCTCAAGAAGCAGGGATGGGATGTCTCTGGGACTTGTACAAGCATTACCAAGAAGAAGAAACTCGAGGAAGAAATGGGCTTTGATGTGTACCTATTTGATGCAAATGAACCAGATGTGACCACCATGGATGTTATGAAGCTCCATACTCACATGGTTGTGTCAATCCCTCCAATTCCTGGTATTGGTGATCCGATGCTGCAACATGAACAACTTCTGAGGAAAGCACTTTTGGGGGGAAATCTTCAATGGCTTTGCTATTTGTCCTCAACTAGTATGTATCCATTCAGTTTAGTAGTTGTTTTATTAGTATCTTATTTGAAAGAGTTTTCTGGACAATATAGCATTTTGATATTCATCAAAGTAATGCAATCTGATATATTGATTGCCAAATGCTTCTGGATTTTAGTTTTGACTATGGTGGAATTGCTTCTGTTAGGTGTATATGGAGATTGTGGTGGTGAATGGGTAGATGAGGATTATCCCCCTAACCCCACAAGGGAAGTGGGAAAATTACGGTTAGCTGCTGAGAAAGGATGGTTACACTTGGGGCAGAGTTTGGGTATCTCAACAAAAGTATTTCGGCTCGGAGGTATCTATGGTCCTGGTAGAAGTGCTGTTGACACCATAATCAAGCAGGAAGCCTTATCAAAAAGTCAGAGAATGAGAGGATATAGGCAGTTCACATCAAGGATTCATGTTGAGGACATTTGTCAAGCCATTGAGGCCAGTATTTGCACAGCTTCCTCCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

302

Amino Acids

33.55

Weight (kDa)

8.35

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19690
fragaria_vesca FvH4_2g39320
malus_domestica MD08G1024600.v1.1
prunus_persica Prupe.1G374300_v2.0.a1
pyrus_communis pycom02g18430 pycom08g01950 pycom15g37000
rosa_chinensis RchiOBHm_Chr6g0301681
rosa_laevigata RLG00000011232
rosa_multiflora Rmu_sc0023062.1_g000003 Rmu_sc0034934.1_g000006 Rmu_sc0043116.1_g000002
rosa_roxburghii Rroxscaffold_7G00166530
rosa_rugosa Rorug06G0308000
rosa_samantha Rh6AG420600 Rh6BG427100 Rh6BG427200 Rh6CG433800 Rh6DG420500
rosa_wichuraiana Rw6G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 2 cut(s) 193, 245
AfiI CCNNNNNNNGG 3 cut(s) 332, 338, 652
AgsI TTSAA 3 cut(s) 37, 401, 475
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 3 cut(s) 331, 757, 902
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 4 cut(s) 60, 295, 677, 896
AluI AGCT 4 cut(s) 60, 295, 677, 896
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 184
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 1 cut(s) 338
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 1 cut(s) 879
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 352, 677
ApoI RAATTY 1 cut(s) 15
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp700I GAANNNNTTC 2 cut(s) 366, 582
AspS9I GGNCC 1 cut(s) 755
AsuHPI GGTGA 2 cut(s) 353, 626
AsuII TTCGAA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 339, 664
BccI CCATC 2 cut(s) 165, 684
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 3 cut(s) 333, 759, 904
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 184
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 1 cut(s) 426
BfuI GTATCC 1 cut(s) 444
BglI GCCNNNNNGGC 1 cut(s) 878
BisI GCNGC 2 cut(s) 353, 678
BlsI GCNGC 2 cut(s) 354, 679
Bme1390I CCNGG 3 cut(s) 333, 759, 904
Bme18I GGWCC 1 cut(s) 755
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 755
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 3 cut(s) 333, 759, 904
BmsI GCATC 2 cut(s) 244, 339
BoxI GACNNNNGTC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 886
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 143
BsaBI GATNNNNATC 2 cut(s) 113, 509
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 2 cut(s) 85, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 338, 652
Bse1I ACTGG 1 cut(s) 882
Bse8I GATNNNNATC 2 cut(s) 113, 509
BseBI CCWGG 3 cut(s) 333, 759, 904
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 5 cut(s) 114, 176, 181, 289, 695
BseJI GATNNNNATC 2 cut(s) 113, 509
BseLI CCNNNNNNNGG 3 cut(s) 332, 338, 652
BseMII CTCAG 2 cut(s) 362, 672
BseNI ACTGG 1 cut(s) 882
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 339, 664
BshFI GGCC 1 cut(s) 881
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 3 cut(s) 86, 106, 120
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 3 cut(s) 332, 338, 652
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 279
BspANI GGCC 1 cut(s) 881
BspCNI CTCAG 2 cut(s) 363, 673
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 338
BspT104I TTCGAA 1 cut(s) 70
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 882
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 3 cut(s) 333, 759, 904
Bst4CI ACNGT 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 371, 681
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 5 cut(s) 114, 176, 181, 289, 695
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 878
BstNI CCWGG 3 cut(s) 333, 759, 904
BstPAI GACNNNNGTC 1 cut(s) 864
BstSCI CCNGG 3 cut(s) 331, 757, 902
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 2 cut(s) 339, 664
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 1 cut(s) 881
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 5 cut(s) 114, 176, 181, 289, 695
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 755
CseI GACGC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 192, 244
CspCI CAANNNNNGTGG 2 cut(s) 639, 674
CviAII CATG 4 cut(s) 280, 307, 359, 851
CviQI GTAC 2 cut(s) 192, 244
DdeI CTNAG 2 cut(s) 371, 681
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 218
EcoRII CCWGG 3 cut(s) 331, 757, 902
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 4 cut(s) 283, 310, 362, 854
FaqI GGGAC 1 cut(s) 199
FatI CATG 4 cut(s) 279, 306, 358, 850
Fnu4HI GCNGC 2 cut(s) 353, 678
FokI GGATG 5 cut(s) 121, 183, 188, 296, 702
Fsp4HI GCNGC 2 cut(s) 353, 678
FspBI CTAG 1 cut(s) 426
GluI GCNGC 2 cut(s) 353, 678
GsuI CTGGAG 1 cut(s) 886
HaeIII GGCC 1 cut(s) 881
HapII CCGG 3 cut(s) 86, 106, 120
HgaI GACGC 1 cut(s) 157
Hin1II CATG 4 cut(s) 283, 310, 362, 854
HincII GTYRAC 2 cut(s) 147, 775
HindII GTYRAC 2 cut(s) 147, 775
HinfI GANTC 1 cut(s) 847
HpaII CCGG 3 cut(s) 86, 106, 120
HphI GGTGA 2 cut(s) 353, 626
Hpy166II GTNNAC 5 cut(s) 83, 147, 244, 775, 837
Hpy188I TCNGA 7 cut(s) 102, 137, 348, 372, 529, 743, 813
Hpy188III TCNNGA 3 cut(s) 160, 486, 553
Hpy8I GTNNAC 5 cut(s) 83, 147, 244, 775, 837
Hpy99I CGWCG 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 83, 257, 355, 523, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 878
HpyF3I CTNAG 2 cut(s) 371, 681
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 283, 310, 362, 854
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 2 cut(s) 339, 664
LweI GCATC 2 cut(s) 244, 339
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 271, 693
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 4 cut(s) 220, 223, 236, 389
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 5 cut(s) 15, 26, 327, 578, 665
MmeI TCCRAC 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 366, 582
MslI CAYNNNNRTG 2 cut(s) 71, 311
MspI CCGG 3 cut(s) 86, 106, 120
MspR9I CCNGG 3 cut(s) 333, 759, 904
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 3 cut(s) 333, 759, 904
MwoI GCNNNNNNNGC 1 cut(s) 878
NcoI CCATGG 1 cut(s) 279
NdeII GATC 1 cut(s) 343
NlaIII CATG 4 cut(s) 283, 310, 362, 854
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 218
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 2 cut(s) 366, 582
PfeI GAWTC 1 cut(s) 847
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 2 cut(s) 354, 679
PshAI GACNNNNGTC 1 cut(s) 864
Psp6I CCWGG 3 cut(s) 331, 757, 902
PspGI CCWGG 3 cut(s) 331, 757, 902
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 755
PspXI VCTCGAGB 1 cut(s) 218
RsaI GTAC 2 cut(s) 193, 245
RsaNI GTAC 2 cut(s) 192, 244
RseI CAYNNNNRTG 2 cut(s) 71, 311
SatI GCNGC 2 cut(s) 353, 678
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 755
ScrFI CCNGG 3 cut(s) 333, 759, 904
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 2 cut(s) 244, 339
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 755
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 71, 311
SmlI CTYRAG 2 cut(s) 158, 218
SmoI CTYRAG 2 cut(s) 158, 218
SpeI ACTAGT 1 cut(s) 425
Sse9I AATT 5 cut(s) 15, 26, 327, 578, 665
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 3 cut(s) 331, 757, 902
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 70, 219
TasI AATT 5 cut(s) 15, 26, 327, 578, 665
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 1 cut(s) 847
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 352, 677
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 103, 276, 305, 375, 499, 839
Van91I CCANNNNNTGG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 755
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 2 cut(s) 366, 582
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.