Rroxscaffold_7G00166530

dTDP-glucose 4,6-dehydratase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011258
Physical Location & Seq
Forward (+)
7945602 .. 7947886
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00166530.1

Sequence Viewer

Length: 1038 bp
ATGGAGTTGTGTCAAATTTCGGGTCAATTGGCATTCAAATCGGGTCATCTGCCCCCAAGCTCCGTCATTCGAATGACCTGTGCACCGGACGTAAAATCTCGGAACCGGATGTTCATCGCCGGAATGGGTTTCGTCGGACAGGCGTTGACGCTTGACCTCAAGAAGCAGGGATGGGATGTCTCTGGGACTTGTACAAGCATTACCAAGAAGAAGAAACTCGAGGAAGAAATGGGCTTTGATATGTACCTATTTGATGCAAATGAACCAGATGTGACCACCATGGATGTTATGAAGCTCCATACTCACATGGTTGTGTCAATCCCTCCAATTCCTGGTATTGGTGATCCGGTACGCATTGTGCTTTTCGTCGAAGTAATGCAATCTGATATATTGATTGCCAAATGCTTCTGGATTTTAGTTTTGACTATGGTGGAATTGCTTCTGTTAGGTGTATATGGAGATTGTGATGGTGCATGGGTAGATGAGGATTATTCCCCTAACCCCACAAGGGAGGTGGGAAAATTAAGGTTAGCTGCTGAGAAAGGATGGTTACACTTGGGGCAGAGTTTGGGCATCTCAACAAAAGTATTTCGGCTCGGAGGTATCTATGGTCCTGGTAGAAGTGCTGTTGACACCATAATCAAGCAGGAAGCCTTATCAGAAAGTCAGAGAATGAGAGGATATAGGCAGTTCACATCAAGGATTCATGTTGAGGACATTTGCCAAGCCATTGAGGCCAGTATTTGCACAGCTTCCTCCAGGGAAATTTATAATATTGTTGATGATGACCCTGCCCCAAGGGAAGCAGTGTTTGAGTATGCAAGAGACTTGGTTGACAAAAAATGGCCAGGTTGGATCAAACAGGCTTCTGAACAAAGAGAATCAACAGTAACTGTTATGAAAGATGGTTCGATGGGTGAGAAGAGAGTTTGCAATGCTCGTATGAAGAAGGAACTAGGACTTGGGCTTCTTCATCCTAGTTATAGATCAGGATTACAAAGTATTATTGACCAAATGGATAAACCATTTTCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

345

Amino Acids

38.49

Weight (kDa)

6.13

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19690
fragaria_vesca FvH4_2g39320
malus_domestica MD08G1024600.v1.1
prunus_persica Prupe.1G374300_v2.0.a1
pyrus_communis pycom02g18430 pycom08g01950 pycom15g37000
rosa_chinensis RchiOBHm_Chr6g0301681
rosa_laevigata RLG00000011232
rosa_multiflora Rmu_sc0023062.1_g000003 Rmu_sc0034934.1_g000006 Rmu_sc0043116.1_g000002
rosa_roxburghii Rroxscaffold_7G00166530
rosa_rugosa Rorug06G0308000
rosa_samantha Rh6AG420600 Rh6BG427100 Rh6BG427200 Rh6CG433800 Rh6DG420500
rosa_wichuraiana Rw6G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AccB7I CCANNNNNTGG 1 cut(s) 332
AclWI GGATC 2 cut(s) 338, 863
AcoI YGGCCR 1 cut(s) 845
AcsI RAATTY 2 cut(s) 15, 765
AfaI GTAC 3 cut(s) 193, 245, 351
AfiI CCNNNNNNNGG 3 cut(s) 332, 338, 508
AgsI TTSAA 2 cut(s) 37, 1032
AjnI CCWGG 4 cut(s) 331, 613, 758, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AluBI AGCT 4 cut(s) 60, 295, 533, 752
AluI AGCT 4 cut(s) 60, 295, 533, 752
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 184, 819
Alw44I GTGCAC 1 cut(s) 81
AlwI GGATC 2 cut(s) 338, 863
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 2 cut(s) 735, 845
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 15, 765
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 353, 929
AsuII TTCGAA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 520
BccI CCATC 5 cut(s) 165, 461, 540, 899, 907
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 4 cut(s) 333, 615, 760, 849
BcoDI GTCTC 2 cut(s) 184, 819
BfaI CTAG 2 cut(s) 956, 978
BglI GCCNNNNNGGC 1 cut(s) 734
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
Bme1390I CCNGG 4 cut(s) 333, 615, 760, 849
Bme18I GGWCC 1 cut(s) 611
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 4 cut(s) 333, 615, 760, 849
BmsI GCATC 2 cut(s) 244, 582
BpmI CTGGAG 1 cut(s) 742
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 279, 759, 797
BsaWI WCCGGW 3 cut(s) 85, 105, 346
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 338, 508
Bse1I ACTGG 1 cut(s) 738
Bse3DI GCAATG 1 cut(s) 940
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 4 cut(s) 333, 615, 760, 849
BseDI CCNNGG 3 cut(s) 279, 759, 797
BseGI GGATG 6 cut(s) 114, 176, 181, 289, 551, 973
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 3 cut(s) 332, 338, 508
BseMI GCAATG 1 cut(s) 940
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 738
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 737, 847
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 4 cut(s) 86, 106, 120, 347
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 3 cut(s) 332, 338, 508
BsmAI GTCTC 2 cut(s) 184, 819
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 2 cut(s) 737, 847
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 3 cut(s) 343, 855, 986
Bsp19I CCATGG 1 cut(s) 279
BspANI GGCC 2 cut(s) 737, 847
BspCNI CTCAG 1 cut(s) 529
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 2 cut(s) 338, 863
BspT104I TTCGAA 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 940
BsrGI TGTACA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 738
BssECI CCNNGG 3 cut(s) 279, 759, 797
BssMI GATC 3 cut(s) 343, 855, 986
BssT1I CCWWGG 2 cut(s) 279, 797
Bst2UI CCWGG 4 cut(s) 333, 615, 760, 849
Bst4CI ACNGT 2 cut(s) 889, 895
Bst6I CTCTTC 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 537
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 6 cut(s) 114, 176, 181, 289, 551, 973
BstKTI GATC 3 cut(s) 346, 858, 989
BstMAI GTCTC 2 cut(s) 184, 819
BstMBI GATC 3 cut(s) 343, 855, 986
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNI CCWGG 4 cut(s) 333, 615, 760, 849
BstSCI CCNGG 4 cut(s) 331, 613, 758, 847
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 737, 847
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 6 cut(s) 114, 176, 181, 289, 551, 973
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 1 cut(s) 813
CaiI CAGNNNCTG 1 cut(s) 893
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 192, 244, 350
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 4 cut(s) 280, 307, 474, 707
CviQI GTAC 3 cut(s) 192, 244, 350
DdeI CTNAG 1 cut(s) 537
DpnI GATC 3 cut(s) 345, 857, 988
DpnII GATC 3 cut(s) 343, 855, 986
EaeI YGGCCR 1 cut(s) 845
Eam1104I CTCTTC 1 cut(s) 917
EarI CTCTTC 1 cut(s) 917
Eco130I CCWWGG 2 cut(s) 279, 797
Eco47I GGWCC 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 218
EcoRII CCWGG 4 cut(s) 331, 613, 758, 847
EcoT14I CCWWGG 2 cut(s) 279, 797
ErhI CCWWGG 2 cut(s) 279, 797
FaeI CATG 4 cut(s) 283, 310, 477, 710
FaqI GGGAC 1 cut(s) 199
FatI CATG 4 cut(s) 279, 306, 473, 706
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 6 cut(s) 121, 183, 188, 296, 558, 960
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 2 cut(s) 956, 978
GluI GCNGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 742
HaeIII GGCC 2 cut(s) 737, 847
HapII CCGG 4 cut(s) 86, 106, 120, 347
HgaI GACGC 1 cut(s) 157
Hin1II CATG 4 cut(s) 283, 310, 477, 710
HincII GTYRAC 3 cut(s) 147, 631, 835
HindII GTYRAC 3 cut(s) 147, 631, 835
HinfI GANTC 2 cut(s) 703, 881
HpaII CCGG 4 cut(s) 86, 106, 120, 347
HphI GGTGA 2 cut(s) 353, 929
Hpy166II GTNNAC 5 cut(s) 83, 147, 631, 693, 835
Hpy188I TCNGA 7 cut(s) 102, 137, 385, 599, 661, 669, 871
Hpy188III TCNNGA 3 cut(s) 160, 409, 990
Hpy8I GTNNAC 5 cut(s) 83, 147, 631, 693, 835
Hpy99I CGWCG 2 cut(s) 137, 371
HpyAV CCTTC 1 cut(s) 943
HpyCH4III ACNGT 2 cut(s) 889, 895
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 7 cut(s) 83, 257, 379, 473, 747, 821, 933
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 283, 310, 477, 710
Kzo9I GATC 3 cut(s) 343, 855, 986
LmnI GCTCC 2 cut(s) 65, 300
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 2 cut(s) 244, 582
MaeI CTAG 2 cut(s) 956, 978
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 3 cut(s) 271, 549, 889
MalI GATC 3 cut(s) 345, 857, 988
MboI GATC 3 cut(s) 343, 855, 986
MboII GAAGA 6 cut(s) 220, 223, 236, 934, 958, 962
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 847
MluCI AATT 6 cut(s) 15, 26, 327, 434, 521, 765
MluNI TGGCCA 1 cut(s) 847
MmeI TCCRAC 2 cut(s) 115, 833
Mox20I TGGCCA 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 847
MseI TTAA 1 cut(s) 524
MslI CAYNNNNRTG 2 cut(s) 71, 311
Msp20I TGGCCA 1 cut(s) 847
MspI CCGG 4 cut(s) 86, 106, 120, 347
MspR9I CCNGG 4 cut(s) 333, 615, 760, 849
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 4 cut(s) 333, 615, 760, 849
MwoI GCNNNNNNNGC 1 cut(s) 734
NcoI CCATGG 1 cut(s) 279
NdeII GATC 3 cut(s) 343, 855, 986
NlaIII CATG 4 cut(s) 283, 310, 477, 710
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 271
NspV TTCGAA 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 218
PctI GAATGC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 2 cut(s) 703, 881
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 1 cut(s) 535
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 4 cut(s) 331, 613, 758, 847
PspGI CCWGG 4 cut(s) 331, 613, 758, 847
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 611
PspXI VCTCGAGB 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 893
RsaI GTAC 3 cut(s) 193, 245, 351
RsaNI GTAC 3 cut(s) 192, 244, 350
RseI CAYNNNNRTG 2 cut(s) 71, 311
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 3 cut(s) 343, 855, 986
Sau96I GGNCC 1 cut(s) 611
ScrFI CCNGG 4 cut(s) 333, 615, 760, 849
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 2 cut(s) 244, 582
Sfr274I CTCGAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 1 cut(s) 611
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 71, 311
SmlI CTYRAG 2 cut(s) 158, 218
SmoI CTYRAG 2 cut(s) 158, 218
Sse9I AATT 6 cut(s) 15, 26, 327, 434, 521, 765
SspI AATATT 1 cut(s) 775
SspMI CTAG 2 cut(s) 956, 978
StyD4I CCNGG 4 cut(s) 331, 613, 758, 847
StyI CCWWGG 2 cut(s) 279, 797
TaaI ACNGT 2 cut(s) 889, 895
TaiI ACGT 1 cut(s) 93
TaqI TCGA 4 cut(s) 70, 219, 369, 911
TasI AATT 6 cut(s) 15, 26, 327, 434, 521, 765
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 2 cut(s) 703, 881
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 813
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 7 cut(s) 103, 276, 305, 695, 914, 959, 962
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 813
Van91I CCANNNNNTGG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 611
XapI RAATTY 2 cut(s) 15, 765
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 2 cut(s) 956, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.