Prupe.1G374300_v2.0.a1

dTDP-glucose 4,6-dehydratase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011258
Physical Location & Seq
Forward (+)
33992856 .. 33995770
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G374300.1

Sequence Viewer

Length: 1023 bp
ATGGAGTTGCATCAAATATCGGGTTCCATCGCCTTCAAATTTGGTCATGCCCCGAGACATGCCGTCATTCGAATGACCGGTACACCGGAGTTCAATTCTCGGAACCGGATGTTTATTGCGGGGATGGGTTTCGTCGGCCAGGTGTTGGCGCAAGACCTCAAGAACCAAGGATGGGCTGTCTCTGGGACTTGTACGAGCAGTATCAAGAAGAAGAAGCTTGAGGAAGAAAGGGGCTTTGATATCTACCTTTTTGATGCAAACCAGCCAGATGTGACCAGCACCCTAGAAATTATCAAGGACCATACCCACCTGCTTGTCTCCATCCCTCCAGTTCCTGGTATCGGAGACCCGATACTGCAGAATGAACTTAGTCTGAGGAGAGCACTTATGGGTGGAAATCTTCAATGGATTTGTTATTTGTCATCAACTAGTGTATATGGAGACTCAGGCGGTGCATGGGTGGATGAGGATTATCCCCCCAACCCCACAAGTGATGTGGGTAGATTAAGGTTAGCTGCTGAGGAGGGATGGTTAAATTTGGGCCAGAGTCTGGGCATCTCAACAAAAGTTTTTCGGCTTGGAGGCATCTATGGTCCTGGTAGAAGTGCTGTTGATACAATAATCAAGCGGAGAGCTTTATCGGAAAGTCAGAGAATGAGAGGATATAGGCGGTTCACATCAAGAGTTAATGTTCAGGACATTTGTCAAGCCCTGAAGGCCAGTATATGCACATCTTCCTCCAGGCGAGTTTATAATATTGTTGATGATGAGCCAGCCCAAAGGGAAGAAGTATTTGAGTATGCAAGGGACTTGGTTGAGAAAAAGTGGCCTGGCTGGATCAAACATTCTTCTGAGGAAAAAGAGTCTTCGGTTATTGTTAAGAAGGAGGGTTTATCGGGTGAGAAGAGAGTCTCCAATGCTCGTATGAAGAAAGAGCTAGGTGTGAGGCTTCTTCATCCAAGTTATAGGTCAGGATTGCAAAGCATTATTGACCAAATGGATAAACCCTTTTTAGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

341

Amino Acids

38.02

Weight (kDa)

9.04

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19690
fragaria_vesca FvH4_2g39320
malus_domestica MD08G1024600.v1.1
prunus_persica Prupe.1G374300_v2.0.a1
pyrus_communis pycom02g18430 pycom08g01950 pycom15g37000
rosa_chinensis RchiOBHm_Chr6g0301681
rosa_laevigata RLG00000011232
rosa_multiflora Rmu_sc0023062.1_g000003 Rmu_sc0034934.1_g000006 Rmu_sc0043116.1_g000002
rosa_roxburghii Rroxscaffold_7G00166530
rosa_rugosa Rorug06G0308000
rosa_samantha Rh6AG420600 Rh6BG427100 Rh6BG427200 Rh6CG433800 Rh6DG420500
rosa_wichuraiana Rw6G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AarI CACCTGC 1 cut(s) 318
Acc36I ACCTGC 1 cut(s) 318
AccB7I CCANNNNNTGG 3 cut(s) 145, 335, 550
AciI CCGC 4 cut(s) 119, 450, 628, 670
AclWI GGATC 1 cut(s) 845
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 2 cut(s) 38, 535
AcuI CTGAAG 1 cut(s) 734
AfaI GTAC 2 cut(s) 82, 193
AfiI CCNNNNNNNGG 5 cut(s) 145, 172, 335, 341, 550
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 3 cut(s) 37, 94, 404
AhdI GACNNNNNGTC 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 428
AjnI CCWGG 5 cut(s) 138, 334, 595, 740, 829
AluBI AGCT 4 cut(s) 217, 515, 635, 937
AluI AGCT 4 cut(s) 217, 515, 635, 937
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 6 cut(s) 49, 184, 322, 339, 435, 916
AlwI GGATC 1 cut(s) 845
AlwNI CAGNNNCTG 2 cut(s) 335, 550
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 4 cut(s) 136, 541, 717, 827
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 38, 535
AsiGI ACCGGT 1 cut(s) 77
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 298, 541, 593
AsuHPI GGTGA 1 cut(s) 911
AsuII TTCGAA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 298, 593
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 385
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 502
BccI CCATC 5 cut(s) 35, 118, 165, 329, 522
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 5 cut(s) 140, 336, 597, 742, 831
BcoDI GTCTC 6 cut(s) 49, 184, 322, 339, 435, 916
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 3 cut(s) 284, 429, 938
BfmI CTRYAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 5 cut(s) 140, 336, 597, 742, 831
Bme18I GGWCC 2 cut(s) 298, 593
BmeRI GACNNNNNGTC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 298, 541, 593
BmiI GGNNCC 2 cut(s) 25, 104
BmrFI CCNGG 5 cut(s) 140, 336, 597, 742, 831
BmsI GCATC 4 cut(s) 19, 244, 564, 594
BoxI GACNNNNGTC 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 2 cut(s) 312, 724
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 143, 239
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 3 cut(s) 77, 85, 105
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 172, 335, 341, 550
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 329, 720
BseBI CCWGG 5 cut(s) 140, 336, 597, 742, 831
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 7 cut(s) 114, 129, 176, 321, 469, 533, 955
BseLI CCNNNNNNNGG 5 cut(s) 145, 172, 335, 341, 550
BseMII CTCAG 4 cut(s) 365, 459, 510, 843
BseNI ACTGG 2 cut(s) 329, 720
BseRI GAGGAG 2 cut(s) 391, 536
BseXI GCAGC 1 cut(s) 502
BshFI GGCC 4 cut(s) 138, 543, 719, 829
BshTI ACCGGT 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 3 cut(s) 78, 86, 106
BslFI GGGAC 2 cut(s) 199, 821
BslI CCNNNNNNNGG 5 cut(s) 145, 172, 335, 341, 550
BsmAI GTCTC 6 cut(s) 49, 184, 322, 339, 435, 916
BsmFI GGGAC 2 cut(s) 199, 821
BsnI GGCC 4 cut(s) 138, 543, 719, 829
Bso31I GGTCTC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 837
BspACI CCGC 4 cut(s) 119, 450, 628, 670
BspANI GGCC 4 cut(s) 138, 543, 719, 829
BspCNI CTCAG 4 cut(s) 366, 458, 511, 844
BspLI GGNNCC 2 cut(s) 25, 104
BspMAI CTGCAG 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 1 cut(s) 845
BspT104I TTCGAA 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 2 cut(s) 329, 720
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 1 cut(s) 837
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 5 cut(s) 140, 336, 597, 742, 831
Bst6I CTCTTC 1 cut(s) 899
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 5 cut(s) 368, 374, 445, 519, 852
BstF5I GGATG 7 cut(s) 114, 129, 176, 321, 469, 533, 955
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 840
BstMAI GTCTC 6 cut(s) 49, 184, 322, 339, 435, 916
BstMBI GATC 1 cut(s) 837
BstMWI GCNNNNNNNGC 1 cut(s) 716
BstNI CCWGG 5 cut(s) 140, 336, 597, 742, 831
BstNSI RCATGY 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 702
BstSCI CCNGG 5 cut(s) 138, 334, 595, 740, 829
BstSFI CTRYAG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 858
BsuRI GGCC 4 cut(s) 138, 543, 719, 829
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 7 cut(s) 114, 129, 176, 321, 469, 533, 955
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 774
CaiI CAGNNNCTG 2 cut(s) 335, 550
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 298, 541, 593
Csp6I GTAC 2 cut(s) 81, 192
CspAI ACCGGT 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 3 cut(s) 47, 59, 456
CviQI GTAC 2 cut(s) 81, 192
DdeI CTNAG 5 cut(s) 368, 374, 445, 519, 852
DpnI GATC 1 cut(s) 839
DpnII GATC 1 cut(s) 837
DriI GACNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 899
Eam1105I GACNNNNNGTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 339
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 298, 593
Eco57I CTGAAG 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 52
EcoRII CCWGG 5 cut(s) 138, 334, 595, 740, 829
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 3 cut(s) 50, 62, 459
FaqI GGGAC 2 cut(s) 199, 821
FatI CATG 3 cut(s) 46, 58, 455
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 7 cut(s) 121, 136, 183, 308, 476, 540, 942
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 3 cut(s) 284, 429, 938
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 516
GsuI CTGGAG 2 cut(s) 312, 724
HaeIII GGCC 4 cut(s) 138, 543, 719, 829
HapII CCGG 3 cut(s) 78, 86, 106
HhaI GCGC 1 cut(s) 151
Hin1II CATG 3 cut(s) 50, 62, 459
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 443, 547, 863, 909
HpaII CCGG 3 cut(s) 78, 86, 106
HphI GGTGA 1 cut(s) 911
Hpy166II GTNNAC 2 cut(s) 83, 675
Hpy188I TCNGA 6 cut(s) 102, 344, 375, 643, 651, 853
Hpy188III TCNNGA 5 cut(s) 160, 205, 681, 695, 972
Hpy8I GTNNAC 2 cut(s) 83, 675
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 43, 709, 877
HpyCH4V TGCA 7 cut(s) 10, 257, 358, 455, 729, 803, 979
HpyF10VI GCNNNNNNNGC 1 cut(s) 716
HpyF3I CTNAG 5 cut(s) 368, 374, 445, 519, 852
Hsp92II CATG 3 cut(s) 50, 62, 459
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 837
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 4 cut(s) 19, 244, 564, 594
MaeI CTAG 3 cut(s) 284, 429, 938
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 839
MboI GATC 1 cut(s) 837
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 4 cut(s) 38, 94, 288, 535
MlyI GAGTC 4 cut(s) 437, 556, 872, 918
MseI TTAA 4 cut(s) 506, 533, 687, 879
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 3 cut(s) 78, 86, 106
MspR9I CCNGG 5 cut(s) 140, 336, 597, 742, 831
MvaI CCWGG 5 cut(s) 140, 336, 597, 742, 831
MwoI GCNNNNNNNGC 1 cut(s) 716
NdeII GATC 1 cut(s) 837
NlaIII CATG 3 cut(s) 50, 62, 459
NlaIV GGNNCC 2 cut(s) 25, 104
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 62
NspV TTCGAA 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 318
PflMI CCANNNNNTGG 3 cut(s) 145, 335, 550
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 4 cut(s) 437, 555, 871, 917
PpsI GAGTC 4 cut(s) 437, 555, 871, 917
PshAI GACNNNNGTC 1 cut(s) 702
PsiI TTATAA 1 cut(s) 753
Psp6I CCWGG 5 cut(s) 138, 334, 595, 740, 829
PspGI CCWGG 5 cut(s) 138, 334, 595, 740, 829
PspN4I GGNNCC 2 cut(s) 25, 104
PspPI GGNCC 3 cut(s) 298, 541, 593
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 2 cut(s) 335, 550
RsaI GTAC 2 cut(s) 82, 193
RsaNI GTAC 2 cut(s) 81, 192
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 4 cut(s) 506, 533, 687, 879
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 1 cut(s) 837
Sau96I GGNCC 3 cut(s) 298, 541, 593
SchI GAGTC 4 cut(s) 437, 556, 872, 918
ScrFI CCNGG 5 cut(s) 140, 336, 597, 742, 831
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 4 cut(s) 19, 244, 564, 594
SfcI CTRYAG 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 70
SinI GGWCC 2 cut(s) 298, 593
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 158, 218
SmoI CTYRAG 2 cut(s) 158, 218
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 4 cut(s) 38, 94, 288, 535
SsiI CCGC 4 cut(s) 119, 450, 628, 670
SspI AATATT 1 cut(s) 757
SspMI CTAG 3 cut(s) 284, 429, 938
StyD4I CCNGG 5 cut(s) 138, 334, 595, 740, 829
StyI CCWWGG 1 cut(s) 166
TaqI TCGA 1 cut(s) 70
TasI AATT 4 cut(s) 38, 94, 288, 535
Tru1I TTAA 4 cut(s) 506, 533, 687, 879
Tru9I TTAA 4 cut(s) 506, 533, 687, 879
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 378, 941, 944
Van91I CCANNNNNTGG 3 cut(s) 145, 335, 550
VpaK11BI GGWCC 2 cut(s) 298, 593
XapI RAATTY 2 cut(s) 38, 535
XceI RCATGY 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XspI CTAG 3 cut(s) 284, 429, 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.