Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19850 AT1G19850 |
| fragaria_vesca | FvH4_2g38760 FvH4_2g38760 FvH4_2g38760 |
| malus_domestica | MD08G1015500.v1.1 MD15G1014400.v1.1 |
| prunus_persica | Prupe.1G368300_v2.0.a1 |
| pyrus_communis | pycom08g01360 pycom15g01250 |
| rosa_chinensis | RchiOBHm_Chr6g0302551 |
| rosa_laevigata | RLG00000011162 |
| rosa_multiflora | Rmu_sc0007717.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165620 |
| rosa_rugosa | Rorug06G0315000 Rorug06G0315000 |
| rosa_samantha | Rh6AG428300 Rh6BG474400 Rh6CG440400 Rh6DG427400 |
| rosa_wichuraiana | Rw6G037050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1212 |
| Acc36I | ACCTGC | 1 cut(s) | 238 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 434, 1811 |
| AccII | CGCG | 2 cut(s) | 1298, 2373 |
| AciI | CCGC | 8 cut(s) | 578, 818, 864, 957, 1296, 1952, 2326, 2371 |
| AclWI | GGATC | 8 cut(s) | 703, 919, 1055, 1068, 1796, 1885, 2078, 2567 |
| AcoI | YGGCCR | 2 cut(s) | 1271, 1549 |
| AcuI | CTGAAG | 4 cut(s) | 1026, 1082, 1706, 1902 |
| AdeI | CACNNNGTG | 1 cut(s) | 1692 |
| AfaI | GTAC | 8 cut(s) | 136, 426, 874, 941, 1028, 1389, 1749, 2287 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 206, 434, 1302, 1333, 1811 |
| AflII | CTTAAG | 1 cut(s) | 2690 |
| AflIII | ACRYGT | 1 cut(s) | 1282 |
| AjnI | CCWGG | 5 cut(s) | 1075, 1117, 1671, 1824, 1908 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2463, 2495 |
| AleI | CACNNNNGTG | 2 cut(s) | 174, 834 |
| Alw21I | GWGCWC | 1 cut(s) | 1585 |
| Alw26I | GTCTC | 7 cut(s) | 200, 652, 966, 1181, 1858, 1872, 1994 |
| AlwI | GGATC | 8 cut(s) | 703, 919, 1055, 1068, 1796, 1885, 2078, 2567 |
| Ama87I | CYCGRG | 2 cut(s) | 1140, 2515 |
| AoxI | GGCC | 6 cut(s) | 181, 1073, 1271, 1367, 1549, 2241 |
| AspLEI | GCGC | 1 cut(s) | 2675 |
| AspS9I | GGNCC | 3 cut(s) | 182, 2026, 2632 |
| AsuC2I | CCSGG | 3 cut(s) | 1015, 1731, 2404 |
| AsuHPI | GGTGA | 3 cut(s) | 1253, 1941, 2495 |
| AsuNHI | GCTAGC | 1 cut(s) | 2222 |
| AvaI | CYCGRG | 2 cut(s) | 1140, 2515 |
| AvaII | GGWCC | 2 cut(s) | 2026, 2632 |
| AxyI | CCTNAGG | 1 cut(s) | 1201 |
| BalI | TGGCCA | 1 cut(s) | 1551 |
| BamHI | GGATCC | 1 cut(s) | 1060 |
| BbsI | GAAGAC | 2 cut(s) | 33, 380 |
| Bbv12I | GWGCWC | 1 cut(s) | 1585 |
| BccI | CCATC | 9 cut(s) | 316, 672, 1065, 1230, 1234, 1399, 1489, 1537, 2132 |
| BceAI | ACGGC | 1 cut(s) | 1286 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 233, 267, 356, 390 |
| BciT130I | CCWGG | 5 cut(s) | 1077, 1119, 1673, 1826, 1910 |
| BclI | TGATCA | 1 cut(s) | 1756 |
| BcnI | CCSGG | 3 cut(s) | 1015, 1731, 2404 |
| BcoDI | GTCTC | 7 cut(s) | 200, 652, 966, 1181, 1858, 1872, 1994 |
| BfaI | CTAG | 7 cut(s) | 932, 1329, 1445, 2037, 2081, 2184, 2223 |
| BfmI | CTRYAG | 2 cut(s) | 537, 672 |
| BfrI | CTTAAG | 1 cut(s) | 2690 |
| BfuAI | ACCTGC | 1 cut(s) | 238 |
| BglII | AGATCT | 1 cut(s) | 604 |
| Bme1390I | CCNGG | 8 cut(s) | 1015, 1077, 1119, 1673, 1731, 1826, 1910, 2404 |
| Bme18I | GGWCC | 2 cut(s) | 2026, 2632 |
| BmeT110I | CYCGRG | 2 cut(s) | 1140, 2515 |
| BmgT120I | GGNCC | 3 cut(s) | 182, 2026, 2632 |
| BmiI | GGNNCC | 1 cut(s) | 1062 |
| BmrFI | CCNGG | 8 cut(s) | 1015, 1077, 1119, 1673, 1731, 1826, 1910, 2404 |
| BmsI | GCATC | 5 cut(s) | 1328, 1398, 1449, 2007, 2585 |
| BmtI | GCTAGC | 1 cut(s) | 2226 |
| BpiI | GAAGAC | 2 cut(s) | 33, 380 |
| BpmI | CTGGAG | 1 cut(s) | 2295 |
| BpuEI | CTTGAG | 4 cut(s) | 186, 1667, 1976, 2178 |
| BpuMI | CCSGG | 3 cut(s) | 1015, 1731, 2404 |
| BsaAI | YACGTR | 2 cut(s) | 530, 1283 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1059 |
| BsaI | GGTCTC | 2 cut(s) | 966, 1994 |
| BsaJI | CCNNGG | 4 cut(s) | 643, 1151, 1908, 2576 |
| BsaWI | WCCGGW | 1 cut(s) | 1933 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1203, 1233 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 206, 434, 1302, 1333, 1811 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| Bse1I | ACTGG | 6 cut(s) | 127, 1864, 2002, 2070, 2203, 2287 |
| Bse21I | CCTNAGG | 1 cut(s) | 1201 |
| Bse3DI | GCAATG | 1 cut(s) | 2305 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1059 |
| BseBI | CCWGG | 5 cut(s) | 1077, 1119, 1673, 1826, 1910 |
| BseDI | CCNNGG | 4 cut(s) | 643, 1151, 1908, 2576 |
| BseGI | GGATG | 8 cut(s) | 683, 745, 1117, 1127, 1222, 1682, 2600, 2661 |
| BseJI | GATNNNNATC | 1 cut(s) | 1059 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 206, 434, 1302, 1333, 1811 |
| BseMI | GCAATG | 1 cut(s) | 2305 |
| BseNI | ACTGG | 6 cut(s) | 127, 1864, 2002, 2070, 2203, 2287 |
| BseRI | GAGGAG | 1 cut(s) | 2465 |
| BseYI | CCCAGC | 1 cut(s) | 713 |
| BsgI | GTGCAG | 2 cut(s) | 198, 1520 |
| Bsh1236I | CGCG | 2 cut(s) | 1298, 2373 |
| BshFI | GGCC | 6 cut(s) | 183, 1075, 1273, 1369, 1551, 2243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1585 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1140, 2515 |
| BsiSI | CCGG | 6 cut(s) | 146, 1014, 1730, 1875, 1934, 2403 |
| BslFI | GGGAC | 2 cut(s) | 1985, 1995 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 206, 434, 1302, 1333, 1811 |
| BsmAI | GTCTC | 7 cut(s) | 200, 652, 966, 1181, 1858, 1872, 1994 |
| BsmFI | GGGAC | 2 cut(s) | 1985, 1995 |
| BsmI | GAATGC | 2 cut(s) | 444, 2477 |
| BsnI | GGCC | 6 cut(s) | 183, 1075, 1273, 1369, 1551, 2243 |
| Bso31I | GGTCTC | 2 cut(s) | 966, 1994 |
| BsoBI | CYCGRG | 2 cut(s) | 1140, 2515 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1585 |
| Bsp1407I | TGTACA | 1 cut(s) | 1747 |
| Bsp19I | CCATGG | 2 cut(s) | 1151, 2576 |
| BspACI | CCGC | 8 cut(s) | 578, 818, 864, 957, 1296, 1952, 2326, 2371 |
| BspANI | GGCC | 6 cut(s) | 183, 1075, 1273, 1369, 1551, 2243 |
| BspFNI | CGCG | 2 cut(s) | 1298, 2373 |
| BspHI | TCATGA | 2 cut(s) | 610, 1960 |
| BspLI | GGNNCC | 1 cut(s) | 1062 |
| BspMAI | CTGCAG | 1 cut(s) | 541 |
| BspMI | ACCTGC | 1 cut(s) | 238 |
| BspOI | GCTAGC | 1 cut(s) | 2226 |
| BspPI | GGATC | 8 cut(s) | 703, 919, 1055, 1068, 1796, 1885, 2078, 2567 |
| BspTI | CTTAAG | 1 cut(s) | 2690 |
| BspTNI | GGTCTC | 2 cut(s) | 966, 1994 |
| BsrDI | GCAATG | 1 cut(s) | 2305 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BsrGI | TGTACA | 1 cut(s) | 1747 |
| BsrI | ACTGG | 6 cut(s) | 127, 1864, 2002, 2070, 2203, 2287 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssECI | CCNNGG | 4 cut(s) | 643, 1151, 1908, 2576 |
| BssT1I | CCWWGG | 2 cut(s) | 1151, 2576 |
| Bst2UI | CCWGG | 5 cut(s) | 1077, 1119, 1673, 1826, 1910 |
| Bst4CI | ACNGT | 8 cut(s) | 362, 872, 944, 1522, 1690, 1797, 1988, 2104 |
| Bst6I | CTCTTC | 6 cut(s) | 99, 348, 695, 1184, 1861, 2577 |
| BstAFI | CTTAAG | 1 cut(s) | 2690 |
| BstAUI | TGTACA | 1 cut(s) | 1747 |
| BstBAI | YACGTR | 2 cut(s) | 530, 1283 |
| BstC8I | GCNNGC | 7 cut(s) | 171, 181, 245, 774, 1669, 2224, 2677 |
| BstDSI | CCRYGG | 2 cut(s) | 1151, 2576 |
| BstF5I | GGATG | 8 cut(s) | 683, 745, 1117, 1127, 1222, 1682, 2600, 2661 |
| BstFNI | CGCG | 2 cut(s) | 1298, 2373 |
| BstHHI | GCGC | 1 cut(s) | 2675 |
| BstMAI | GTCTC | 7 cut(s) | 200, 652, 966, 1181, 1858, 1872, 1994 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 583, 851, 857, 911, 2228, 2604 |
| BstNI | CCWGG | 5 cut(s) | 1077, 1119, 1673, 1826, 1910 |
| BstNSI | RCATGY | 1 cut(s) | 2479 |
| BstSCI | CCNGG | 8 cut(s) | 1013, 1075, 1117, 1671, 1729, 1824, 1908, 2402 |
| BstSFI | CTRYAG | 2 cut(s) | 537, 672 |
| BstUI | CGCG | 2 cut(s) | 1298, 2373 |
| BstV2I | GAAGAC | 2 cut(s) | 33, 380 |
| BstX2I | RGATCY | 3 cut(s) | 604, 1060, 2083 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2156 |
| BstYI | RGATCY | 3 cut(s) | 604, 1060, 2083 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1201 |
| BsuRI | GGCC | 6 cut(s) | 183, 1075, 1273, 1369, 1551, 2243 |
| BtgI | CCRYGG | 2 cut(s) | 1151, 2576 |
| BtsCI | GGATG | 8 cut(s) | 683, 745, 1117, 1127, 1222, 1682, 2600, 2661 |
| BtsIMutI | CAGTG | 6 cut(s) | 367, 528, 1527, 1695, 2133, 2280 |
| BveI | ACCTGC | 1 cut(s) | 238 |
| Cac8I | GCNNGC | 7 cut(s) | 171, 181, 245, 774, 1669, 2224, 2677 |
| CciI | TCATGA | 2 cut(s) | 610, 1960 |
| CfoI | GCGC | 1 cut(s) | 2675 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 3 cut(s) | 182, 2026, 2632 |
| CseI | GACGC | 1 cut(s) | 2362 |
| Csp6I | GTAC | 8 cut(s) | 135, 425, 873, 940, 1027, 1388, 1748, 2286 |
| CviQI | GTAC | 8 cut(s) | 135, 425, 873, 940, 1027, 1388, 1748, 2286 |
| DraI | TTTAAA | 1 cut(s) | 2440 |
| DraIII | CACNNNGTG | 1 cut(s) | 1692 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1212 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1212 |
| EaeI | YGGCCR | 2 cut(s) | 1271, 1549 |
| Eam1104I | CTCTTC | 6 cut(s) | 99, 348, 695, 1184, 1861, 2577 |
| EarI | CTCTTC | 6 cut(s) | 99, 348, 695, 1184, 1861, 2577 |
| Eco130I | CCWWGG | 2 cut(s) | 1151, 2576 |
| Eco147I | AGGCCT | 2 cut(s) | 1369, 2243 |
| Eco31I | GGTCTC | 2 cut(s) | 966, 1994 |
| Eco32I | GATATC | 1 cut(s) | 1159 |
| Eco47I | GGWCC | 2 cut(s) | 2026, 2632 |
| Eco57I | CTGAAG | 4 cut(s) | 1026, 1082, 1706, 1902 |
| Eco81I | CCTNAGG | 1 cut(s) | 1201 |
| Eco88I | CYCGRG | 2 cut(s) | 1140, 2515 |
| EcoO109I | RGGNCCY | 2 cut(s) | 182, 2026 |
| EcoRII | CCWGG | 5 cut(s) | 1075, 1117, 1671, 1824, 1908 |
| EcoRV | GATATC | 1 cut(s) | 1159 |
| EcoT14I | CCWWGG | 2 cut(s) | 1151, 2576 |
| EcoT22I | ATGCAT | 2 cut(s) | 1321, 2477 |
| ErhI | CCWWGG | 2 cut(s) | 1151, 2576 |
| FaqI | GGGAC | 2 cut(s) | 1985, 1995 |
| FauI | CCCGC | 2 cut(s) | 950, 2378 |
| FauNDI | CATATG | 1 cut(s) | 1315 |
| FbaI | TGATCA | 1 cut(s) | 1756 |
| FokI | GGATG | 8 cut(s) | 690, 752, 1124, 1134, 1209, 1669, 2607, 2668 |
| FspBI | CTAG | 7 cut(s) | 932, 1329, 1445, 2037, 2081, 2184, 2223 |
| GlaI | GCGC | 1 cut(s) | 2674 |
| GsaI | CCCAGC | 1 cut(s) | 717 |
| GsuI | CTGGAG | 1 cut(s) | 2295 |
| HaeIII | GGCC | 6 cut(s) | 183, 1075, 1273, 1369, 1551, 2243 |
| HapII | CCGG | 6 cut(s) | 146, 1014, 1730, 1875, 1934, 2403 |
| HgaI | GACGC | 1 cut(s) | 2362 |
| HhaI | GCGC | 1 cut(s) | 2675 |
| Hin6I | GCGC | 1 cut(s) | 2673 |
| HinP1I | GCGC | 1 cut(s) | 2673 |
| HindIII | AAGCTT | 3 cut(s) | 2434, 2525, 2660 |
| HpaII | CCGG | 6 cut(s) | 146, 1014, 1730, 1875, 1934, 2403 |
| HphI | GGTGA | 3 cut(s) | 1253, 1941, 2495 |
| Hpy166II | GTNNAC | 2 cut(s) | 400, 1525 |
| Hpy8I | GTNNAC | 2 cut(s) | 400, 1525 |
| Hpy99I | CGWCG | 1 cut(s) | 1744 |
| HpyCH4III | ACNGT | 8 cut(s) | 362, 872, 944, 1522, 1690, 1797, 1988, 2104 |
| HpyCH4IV | ACGT | 3 cut(s) | 529, 1213, 1282 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 583, 851, 857, 911, 2228, 2604 |
| HpySE526I | ACGT | 3 cut(s) | 529, 1213, 1282 |
| HspAI | GCGC | 1 cut(s) | 2673 |
| Ksp22I | TGATCA | 1 cut(s) | 1756 |
| LmnI | GCTCC | 6 cut(s) | 160, 210, 1224, 1342, 1588, 2452 |
| LweI | GCATC | 5 cut(s) | 1328, 1398, 1449, 2007, 2585 |
| MaeI | CTAG | 7 cut(s) | 932, 1329, 1445, 2037, 2081, 2184, 2223 |
| MaeII | ACGT | 3 cut(s) | 529, 1213, 1282 |
| MaeIII | GTNAC | 9 cut(s) | 337, 362, 494, 747, 1091, 1675, 1929, 2072, 2428 |
| MfeI | CAATTG | 1 cut(s) | 2421 |
| MflI | RGATCY | 3 cut(s) | 604, 1060, 2083 |
| MhlI | GDGCHC | 1 cut(s) | 1585 |
| MlsI | TGGCCA | 1 cut(s) | 1551 |
| MluCI | AATT | 4 cut(s) | 292, 2269, 2358, 2421 |
| MluNI | TGGCCA | 1 cut(s) | 1551 |
| MlyI | GAGTC | 4 cut(s) | 394, 1200, 1641, 2228 |
| MmeI | TCCRAC | 5 cut(s) | 673, 1024, 1660, 2149, 2501 |
| Mox20I | TGGCCA | 1 cut(s) | 1551 |
| Mph1103I | ATGCAT | 2 cut(s) | 1321, 2477 |
| MscI | TGGCCA | 1 cut(s) | 1551 |
| MseI | TTAA | 5 cut(s) | 54, 1710, 2439, 2682, 2691 |
| MslI | CAYNNNNRTG | 2 cut(s) | 174, 834 |
| Msp20I | TGGCCA | 1 cut(s) | 1551 |
| MspA1I | CMGCKG | 3 cut(s) | 818, 1922, 1954 |
| MspCI | CTTAAG | 1 cut(s) | 2690 |
| MspI | CCGG | 6 cut(s) | 146, 1014, 1730, 1875, 1934, 2403 |
| MspR9I | CCNGG | 8 cut(s) | 1015, 1077, 1119, 1673, 1731, 1826, 1910, 2404 |
| MunI | CAATTG | 1 cut(s) | 2421 |
| Mva1269I | GAATGC | 2 cut(s) | 444, 2477 |
| MvaI | CCWGG | 5 cut(s) | 1077, 1119, 1673, 1826, 1910 |
| MvnI | CGCG | 2 cut(s) | 1298, 2373 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 583, 851, 857, 911, 2228, 2604 |
| NciI | CCSGG | 3 cut(s) | 1015, 1731, 2404 |
| NcoI | CCATGG | 2 cut(s) | 1151, 2576 |
| NdeI | CATATG | 1 cut(s) | 1315 |
| NheI | GCTAGC | 1 cut(s) | 2222 |
| NlaIV | GGNNCC | 1 cut(s) | 1062 |
| NmuCI | GTSAC | 4 cut(s) | 362, 494, 747, 2428 |
| NsiI | ATGCAT | 2 cut(s) | 1321, 2477 |
| NspI | RCATGY | 1 cut(s) | 2479 |
| OliI | CACNNNNGTG | 2 cut(s) | 174, 834 |
| PagI | TCATGA | 2 cut(s) | 610, 1960 |
| PceI | AGGCCT | 2 cut(s) | 1369, 2243 |
| PctI | GAATGC | 2 cut(s) | 444, 2477 |
| PfeI | GAWTC | 8 cut(s) | 719, 1010, 1047, 1292, 1561, 1815, 1913, 1937 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 434, 1811 |
| PfoI | TCCNGGA | 2 cut(s) | 1013, 1824 |
| PleI | GAGTC | 4 cut(s) | 393, 1200, 1640, 2228 |
| PpsI | GAGTC | 4 cut(s) | 393, 1200, 1640, 2228 |
| Ppu21I | YACGTR | 2 cut(s) | 530, 1283 |
| PpuMI | RGGWCCY | 1 cut(s) | 2026 |
| Psp5II | RGGWCCY | 1 cut(s) | 2026 |
| Psp6I | CCWGG | 5 cut(s) | 1075, 1117, 1671, 1824, 1908 |
| PspFI | CCCAGC | 1 cut(s) | 713 |
| PspGI | CCWGG | 5 cut(s) | 1075, 1117, 1671, 1824, 1908 |
| PspN4I | GGNNCC | 1 cut(s) | 1062 |
| PspPI | GGNCC | 3 cut(s) | 182, 2026, 2632 |
| PspPPI | RGGWCCY | 1 cut(s) | 2026 |
| PstI | CTGCAG | 1 cut(s) | 541 |
| PsuI | RGATCY | 3 cut(s) | 604, 1060, 2083 |
| PvuII | CAGCTG | 1 cut(s) | 1922 |
| RsaI | GTAC | 8 cut(s) | 136, 426, 874, 941, 1028, 1389, 1749, 2287 |
| RsaNI | GTAC | 8 cut(s) | 135, 425, 873, 940, 1027, 1388, 1748, 2286 |
| RseI | CAYNNNNRTG | 2 cut(s) | 174, 834 |
| SaqAI | TTAA | 5 cut(s) | 54, 1710, 2439, 2682, 2691 |
| Sau96I | GGNCC | 3 cut(s) | 182, 2026, 2632 |
| SchI | GAGTC | 4 cut(s) | 394, 1200, 1641, 2228 |
| ScrFI | CCNGG | 8 cut(s) | 1015, 1077, 1119, 1673, 1731, 1826, 1910, 2404 |
| SduI | GDGCHC | 1 cut(s) | 1585 |
| SfaNI | GCATC | 5 cut(s) | 1328, 1398, 1449, 2007, 2585 |
| SfcI | CTRYAG | 2 cut(s) | 537, 672 |
| SinI | GGWCC | 2 cut(s) | 2026, 2632 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 174, 834 |
| SmlI | CTYRAG | 5 cut(s) | 201, 1646, 1991, 2193, 2690 |
| SmoI | CTYRAG | 5 cut(s) | 201, 1646, 1991, 2193, 2690 |
| Sse9I | AATT | 4 cut(s) | 292, 2269, 2358, 2421 |
| SseBI | AGGCCT | 2 cut(s) | 1369, 2243 |
| SsiI | CCGC | 8 cut(s) | 578, 818, 864, 957, 1296, 1952, 2326, 2371 |
| SspI | AATATT | 1 cut(s) | 1420 |
| SspMI | CTAG | 7 cut(s) | 932, 1329, 1445, 2037, 2081, 2184, 2223 |
| StuI | AGGCCT | 2 cut(s) | 1369, 2243 |
| StyD4I | CCNGG | 8 cut(s) | 1013, 1075, 1117, 1671, 1729, 1824, 1908, 2402 |
| StyI | CCWWGG | 2 cut(s) | 1151, 2576 |
| TaaI | ACNGT | 8 cut(s) | 362, 872, 944, 1522, 1690, 1797, 1988, 2104 |
| TaiI | ACGT | 3 cut(s) | 532, 1216, 1285 |
| TaqI | TCGA | 4 cut(s) | 601, 698, 1161, 2469 |
| TasI | AATT | 4 cut(s) | 292, 2269, 2358, 2421 |
| TatI | WGTACW | 1 cut(s) | 1747 |
| TauI | GCSGC | 2 cut(s) | 580, 2329 |
| TfiI | GAWTC | 8 cut(s) | 719, 1010, 1047, 1292, 1561, 1815, 1913, 1937 |
| Tru1I | TTAA | 5 cut(s) | 54, 1710, 2439, 2682, 2691 |
| Tru9I | TTAA | 5 cut(s) | 54, 1710, 2439, 2682, 2691 |
| TscAI | CASTG | 6 cut(s) | 367, 528, 1527, 1695, 2140, 2287 |
| TseFI | GTSAC | 4 cut(s) | 362, 494, 747, 2428 |
| Tsp45I | GTSAC | 4 cut(s) | 362, 494, 747, 2428 |
| TspGWI | ACGGA | 1 cut(s) | 1053 |
| TspRI | CASTG | 6 cut(s) | 367, 528, 1527, 1695, 2140, 2287 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 434, 1811 |
| Vha464I | CTTAAG | 1 cut(s) | 2690 |
| VpaK11BI | GGWCC | 2 cut(s) | 2026, 2632 |
| XbaI | TCTAGA | 1 cut(s) | 2080 |
| XceI | RCATGY | 1 cut(s) | 2479 |
| XspI | CTAG | 7 cut(s) | 932, 1329, 1445, 2037, 2081, 2184, 2223 |
| Zsp2I | ATGCAT | 2 cut(s) | 1321, 2477 |