Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010080

Physical Location & Seq

Genomic Coordinates Forward (+)

724402 .. 728623

Gene Structure 4222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01250.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGAAAAAAGAAATGATGGTTTCCGTGGAGGAGAAGCTCAAAACTGGATGCTTGCTTGATGAGATGAAGCTGCTGAAAGAGCTGCAGGACCACTCTGGGACCCGGAAGGCTATAAATTCGGAGCTATGGCACGCCTGCGCCGGCCCGCTTGTTTGCTTGCCGCAGGTTGGGAGTCTCTCGTACTACTTCCCCCAAGGACATAGCGAACAGGTGGCGGTTTCGACGAAAAGAACGGCAACCTCACAAATTCCGAACTATCCCAATCTCCCTTCGCAGTTGCTATGCCAAGTTCAAAATGTTACACTGCATGCAGACAAAGAAACCGACGAAATCTATGCACAAATGAGCCTTAAACCAGTGAGCTCTGAAAGGGATGTCTTCCCGGTACCAGACTATGGAATGAAGCCTAGTAAACATCCATCTGAGTTTTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACACACGGGGGATTCTCCGTGCCGCGTAGGGCAGCAGAAAAGCTCTTTCCTCCGCTGGATTTCACAATGCAACCACCAACCCAAGAACTTGTTGTCCGAGACTTGCACGATAATACCTGGACATTTCGCCACATTTATCGCGGGCAGCCGAAACGACACCTTCTCACAACTGGATGGAGTTTGTTTGTTGGTGCAAAGAGGCTTAGAGCAGGGGATTCCGTTCTATTTATCAGGGATGAGAAGTCACAGCTATTGATCGGCGTGAGACGAGCAAATCGTCAGCAAACAACATTGCCGTCATCAGTTCTATCTGCTGATAGCATGCACATTGGTGTCCTTGCTGCTGCGGCTCATGCTGCAGCTAATCGGAGTCCATTCACTATATTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTCATACCTTTGGCCACATTCCAAAGGGCTGTATTTGGGACACAGCTCTCGATTGGCATGAGGTTTGGAATGATGTTCGAGACAGAGGAGTCGGGCAAGCGCAGATATATGGGTACGATAGTTGGAATTAGTGATTTAGATCCGCTGAGATGGCCTGGTTCGAAATGGCGAAATCTTCAGGTAGAGTGGGATGAGCCAGGGTGTTGTGATAAACAGAACAGGGTTAGTTCATGGGAAATCGAAACTCCGGAAAGTCTTTTCATATTTCCTTCTCTGACTTCGAGTCTTAAAAGACCGATGCACTCTGGATTCTTGGGAGCAGAAGCCGAATGGGGAAATATGACCAAAAGATCGATCATCCGGGTTCCTGAGATTGGAAACGGGAACTCTTTTCCATACCAGATCTCAAATCTATGTTCGGAACAGCTAGTCAATATGCTAATGAAACCTCAACTTGTTAATCATGCCGGAACATTAGCTACTCTACAACAGGAATCAGCTGCTAATGTAGATTCAGTAGATATGAAGGCTATGCAGGCCAAAATCAACCAAAAGAATCCAGCTGATGGCGTAAACGCGAATGCACCATTTCATGGAATTCCACCGGGAAATCTGAACACCGTAGCCAAGTTTGGAAGCCAAGCACCAGTTGGAAGTAGCACTGAGAAGACGAAATCAGAACCTGAACTTTCTGCAGATCAGTTAAGTCAGTTGAGTTCTGCAGGGCAAGGCATCGAGGATAAATTAGTTGCAGGGTTTGCGAGTCCCTATAACATTATGAATCAGCTGACATTTGCCAACCAAAACACCAGTTCAACGCAACTACAAACTAGCCCGCGGCCTACGCAGCCCTTGGATTCACTACTCTACCACTCTCAACAAACTGATTTACCTCATTCGGATTTCAATGGCATGAACAGTTCACTTCCATTCCTAGACAATGATGAATGCATGTTTTACTCTTCTTGCCAACCCTTTTCCGGGGCACTCAGATCACCGGGGGCTTTGTCTGCGTTTTGTTTACCAGATTCTTCAACTGTTTTAACTGACGCAAATACTTCCTCCCTAACTTCAATCGGTCAGGACATGTGGGATAATAGCCTCATTAATTCAAGCAGCCTGAGAGATTTGTCGGATGAGAGCAACAATCAAAGTGGGATCTACGGTTGTCCGAACGCTGATGTTGGTAGCGGCTTAAGTACTGTCGTTGACCCTTGTGTCTCAAGCACTATACTCGATGACTTCTCTACACTGAAGAATGCCAACTTCCAGAATTCTTCGGATTGTTTGGTTAAAAACTTGAGCTCAAGCCAGGATCTTCAGTCGCAGATTACCTCGGCGAGCCTTGGAGACTCTCAGGCTTTCTCTAGGCAAGGCCTGGCAGACGCCTCAGGCGGTACATCCTCGAGCAATGTAGAACTTGATGAGAGCAGTCTACTGCAGAACAGTTCGTGGCATCCGGTGGTTGCACCCATGCGAACCTACACGAAGGTTCAAAAGACGGGTTCTGTTGGGCGGTCAATTGATGTTACTAATTTCAAAAACTACGAAGAACTATGCTCTGCAATCGAATGCATGTTCGGACTAGAAGGGCTGCTAAATGATCCAAGAGGTTCAGGGTGGAAATTGGTTTATGTAGATTATGAGAACGACGTTCTTCTTGTCGGGGATGATCCTTGGGAGGAATTTGTTGGTTGTGTTCGCTGCATCAGAATCCTTTCGCCTACGGAAGTTCAGCAGATGAGCGAAGAAGGCATGAAGCTTCTGAACAGCGCTGCAATGCAAGGGATGAATAGCACCATGTCCGAAGGTGGCCGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009908 GO:0009942 GO:0010033 GO:0010051 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

901

Amino Acids

98.55

Weight (kDa)

5.36

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19850 AT1G19850
fragaria_vesca	FvH4_2g38760 FvH4_2g38760 FvH4_2g38760
malus_domestica	MD08G1015500.v1.1 MD15G1014400.v1.1
prunus_persica	Prupe.1G368300_v2.0.a1
pyrus_communis	pycom08g01360 pycom15g01250
rosa_chinensis	RchiOBHm_Chr6g0302551
rosa_laevigata	RLG00000011162
rosa_multiflora	Rmu_sc0007717.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165620
rosa_rugosa	Rorug06G0315000 Rorug06G0315000
rosa_samantha	Rh6AG428300 Rh6BG474400 Rh6CG440400 Rh6DG427400
rosa_wichuraiana	Rw6G037050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	967, 2096
Acc36I	ACCTGC	1 cut(s)	154
Acc65I	GGTACC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	385
AccB7I	CCANNNNNTGG	3 cut(s)	395, 1445, 1472
AccI	GTMKAC	1 cut(s)	2314
AccII	CGCG	4 cut(s)	487, 603, 1457, 1717
AccIII	TCCGGA	1 cut(s)	1126
AclWI	GGATC	5 cut(s)	1013, 2045, 2202, 2477, 2546
AcoI	YGGCCR	2 cut(s)	891, 2692
AcsI	RAATTY	6 cut(s)	115, 246, 875, 1476, 2152, 2564
AcuI	CTGAAG	4 cut(s)	855, 1040, 2153, 2183
AcyI	GRCGYC	1 cut(s)	2265
AfaI	GTAC	5 cut(s)	182, 387, 994, 2080, 2278
AfeI	AGCGCT	1 cut(s)	2653
AfiI	CCNNNNNNNGG	7 cut(s)	167, 395, 1253, 1445, 1472, 1859, 1860
AflII	CTTAAG	1 cut(s)	2074
AflIII	ACRYGT	1 cut(s)	1965
AgsI	TTSAA	8 cut(s)	293, 1695, 1786, 1914, 1953, 1992, 2375, 2419
AhdI	GACNNNNNGTC	1 cut(s)	1161
AjnI	CCWGG	5 cut(s)	578, 1033, 1075, 2190, 2256
AleI	CACNNNNGTG	1 cut(s)	792
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
Alw21I	GWGCWC	2 cut(s)	365, 2186
Alw26I	GTCTC	6 cut(s)	179, 555, 721, 953, 2104, 2223
AlwI	GGATC	5 cut(s)	1013, 2045, 2202, 2477, 2546
AlwNI	CAGNNNCTG	1 cut(s)	1562
Ama87I	CYCGRG	1 cut(s)	2284
Aor13HI	TCCGGA	1 cut(s)	1126
Aor51HI	AGCGCT	1 cut(s)	2653
AoxI	GGCC	7 cut(s)	142, 891, 1031, 1416, 1718, 2254, 2692
ApoI	RAATTY	6 cut(s)	115, 246, 875, 1476, 2152, 2564
AseI	ATTAAT	1 cut(s)	1986
Asp700I	GAANNNNTTC	1 cut(s)	2596
Asp718I	GGTACC	1 cut(s)	385
AspLEI	GCGC	3 cut(s)	140, 981, 2654
AspS9I	GGNCC	3 cut(s)	88, 99, 143
AsuC2I	CCSGG	6 cut(s)	103, 383, 1241, 1485, 1861, 1878
AsuHPI	GGTGA	1 cut(s)	1866
AsuII	TTCGAA	1 cut(s)	1040
AvaI	CYCGRG	1 cut(s)	2284
AvaII	GGWCC	2 cut(s)	88, 99
AxyI	CCTNAGG	1 cut(s)	2269
BaeGI	GKGCMC	1 cut(s)	1867
BaeI	ACNNNNGTAYC	2 cut(s)	984, 1017
BalI	TGGCCA	1 cut(s)	893
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	365, 2186
BbsI	GAAGAC	2 cut(s)	370, 1553
Bbv12I	GWGCWC	2 cut(s)	365, 2186
BccI	CCATC	5 cut(s)	10, 427, 630, 1023, 1439
BceAI	ACGGC	3 cut(s)	249, 742, 2679
BcgI	CGANNNNNNTGC	4 cut(s)	317, 351, 2095, 2129
BciT130I	CCWGG	5 cut(s)	580, 1035, 1077, 2192, 2258
BcnI	CCSGG	6 cut(s)	103, 383, 1241, 1485, 1861, 1878
BcoDI	GTCTC	6 cut(s)	179, 555, 721, 953, 2104, 2223
BfaI	CTAG	6 cut(s)	408, 1307, 1710, 1814, 2247, 2465
BfmI	CTRYAG	5 cut(s)	83, 819, 1572, 1599, 2318
BfoI	RGCGCY	1 cut(s)	2655
BfrI	CTTAAG	1 cut(s)	2074
BfuAI	ACCTGC	1 cut(s)	154
BglII	AGATCT	1 cut(s)	1281
BmcAI	AGTACT	1 cut(s)	2080
Bme18I	GGWCC	2 cut(s)	88, 99
BmeRI	GACNNNNNGTC	1 cut(s)	1161
BmeT110I	CYCGRG	1 cut(s)	2284
BmgT120I	GGNCC	3 cut(s)	88, 99, 143
BmiI	GGNNCC	4 cut(s)	100, 101, 387, 1245
BmsI	GCATC	5 cut(s)	38, 1167, 1620, 2344, 2595
BpiI	GAAGAC	2 cut(s)	370, 1553
Bpu14I	TTCGAA	1 cut(s)	1040
BpuEI	CTTGAG	3 cut(s)	2086, 2170, 2200
BpuMI	CCSGG	6 cut(s)	103, 383, 1241, 1485, 1861, 1878
Bsa29I	ATCGAT	1 cut(s)	1232
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaHI	GRCGYC	1 cut(s)	2265
BsaWI	WCCGGW	2 cut(s)	1126, 2338
Bsc4I	CCNNNNNNNGG	7 cut(s)	167, 395, 1253, 1445, 1472, 1859, 1860
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	5 cut(s)	49, 356, 637, 1526, 1689
Bse21I	CCTNAGG	1 cut(s)	2269
Bse3DI	GCAATG	3 cut(s)	752, 2296, 2664
Bse8I	GATNNNNATC	1 cut(s)	1017
BseAI	TCCGGA	1 cut(s)	1126
BseBI	CCWGG	5 cut(s)	580, 1035, 1077, 2192, 2258
BseCI	ATCGAT	1 cut(s)	1232
BseJI	GATNNNNATC	1 cut(s)	1017
BseLI	CCNNNNNNNGG	7 cut(s)	167, 395, 1253, 1445, 1472, 1859, 1860
BseMI	GCAATG	3 cut(s)	752, 2296, 2664
BseMII	CTCAG	8 cut(s)	414, 1016, 1239, 1533, 1882, 1991, 2249, 2283
BseNI	ACTGG	5 cut(s)	49, 356, 637, 1526, 1689
BseRI	GAGGAG	2 cut(s)	44, 980
BseSI	GKGCMC	1 cut(s)	1867
Bsh1236I	CGCG	4 cut(s)	487, 603, 1457, 1717
BshFI	GGCC	7 cut(s)	144, 893, 1033, 1418, 1720, 2256, 2694
BshNI	GGYRCC	1 cut(s)	385
BshVI	ATCGAT	1 cut(s)	1232
BsiHKAI	GWGCWC	2 cut(s)	365, 2186
BsiHKCI	CYCGRG	1 cut(s)	2284
BslFI	GGGAC	4 cut(s)	112, 931, 1629, 2682
BslI	CCNNNNNNNGG	7 cut(s)	167, 395, 1253, 1445, 1472, 1859, 1860
BsmAI	GTCTC	6 cut(s)	179, 555, 721, 953, 2104, 2223
BsmBI	CGTCTC	1 cut(s)	721
BsmFI	GGGAC	4 cut(s)	112, 931, 1629, 2682
BsmI	GAATGC	4 cut(s)	1465, 1832, 2143, 2456
BsnI	GGCC	7 cut(s)	144, 893, 1033, 1418, 1720, 2256, 2694
BsoBI	CYCGRG	1 cut(s)	2284
Bsp119I	TTCGAA	1 cut(s)	1040
Bsp1286I	GDGCHC	3 cut(s)	365, 1867, 2186
Bsp13I	TCCGGA	1 cut(s)	1126
BspANI	GGCC	7 cut(s)	144, 893, 1033, 1418, 1720, 2256, 2694
BspCNI	CTCAG	8 cut(s)	415, 1017, 1240, 1534, 1881, 1992, 2248, 2282
BspDI	ATCGAT	1 cut(s)	1232
BspEI	TCCGGA	1 cut(s)	1126
BspFNI	CGCG	4 cut(s)	487, 603, 1457, 1717
BspLI	GGNNCC	4 cut(s)	100, 101, 387, 1245
BspMAI	CTGCAG	5 cut(s)	87, 823, 1576, 1603, 2322
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	5 cut(s)	1013, 2045, 2202, 2477, 2546
BspT104I	TTCGAA	1 cut(s)	1040
BspT107I	GGYRCC	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	2074
BsrDI	GCAATG	3 cut(s)	752, 2296, 2664
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	5 cut(s)	49, 356, 637, 1526, 1689
BssAI	RCCGGY	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	2265
BssT1I	CCWWGG	5 cut(s)	193, 857, 1731, 2224, 2555
Bst2UI	CCWGG	5 cut(s)	580, 1035, 1077, 2192, 2258
Bst4CI	ACNGT	6 cut(s)	1501, 1799, 1918, 2045, 2083, 2327
Bst6I	CTCTTC	1 cut(s)	1846
BstACI	GRCGYC	1 cut(s)	2265
BstAFI	CTTAAG	1 cut(s)	2074
BstAPI	GCANNNNNTGC	1 cut(s)	1637
BstBI	TTCGAA	1 cut(s)	1040
BstDEI	CTNAG	9 cut(s)	423, 665, 1025, 1248, 1542, 1868, 2000, 2235, 2269
BstDSI	CCRYGG	2 cut(s)	24, 1715
BstFNI	CGCG	4 cut(s)	487, 603, 1457, 1717
BstH2I	RGCGCY	1 cut(s)	2655
BstHHI	GCGC	3 cut(s)	140, 981, 2654
BstMAI	GTCTC	6 cut(s)	179, 555, 721, 953, 2104, 2223
BstNI	CCWGG	5 cut(s)	580, 1035, 1077, 2192, 2258
BstNSI	RCATGY	6 cut(s)	311, 787, 867, 1834, 1969, 2458
BstSFI	CTRYAG	5 cut(s)	83, 819, 1572, 1599, 2318
BstSLI	GKGCMC	1 cut(s)	1867
BstUI	CGCG	4 cut(s)	487, 603, 1457, 1717
BstV2I	GAAGAC	2 cut(s)	370, 1553
BstX2I	RGATCY	4 cut(s)	1018, 1281, 2037, 2194
BstYI	RGATCY	4 cut(s)	1018, 1281, 2037, 2194
Bsu15I	ATCGAT	1 cut(s)	1232
Bsu36I	CCTNAGG	1 cut(s)	2269
BsuRI	GGCC	7 cut(s)	144, 893, 1033, 1418, 1720, 2256, 2694
BsuTUI	ATCGAT	1 cut(s)	1232
BtgI	CCRYGG	2 cut(s)	24, 1715
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	4 cut(s)	302, 363, 1539, 2129
BveI	ACCTGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	1562
CfoI	GCGC	3 cut(s)	140, 981, 2654
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	88, 99, 143
Cfr42I	CCGCGG	1 cut(s)	1718
ClaI	ATCGAT	1 cut(s)	1232
CseI	GACGC	2 cut(s)	1937, 2273
Csp6I	GTAC	5 cut(s)	181, 386, 993, 2079, 2277
CspCI	CAANNNNNGTGG	2 cut(s)	2014, 2049
CviQI	GTAC	5 cut(s)	181, 386, 993, 2079, 2277
DdeI	CTNAG	9 cut(s)	423, 665, 1025, 1248, 1542, 1868, 2000, 2235, 2269
DrdI	GACNNNNNNGTC	2 cut(s)	967, 2096
DriI	GACNNNNNGTC	1 cut(s)	1161
DseDI	GACNNNNNNGTC	2 cut(s)	967, 2096
EaeI	YGGCCR	2 cut(s)	891, 2692
Eam1104I	CTCTTC	1 cut(s)	1846
Eam1105I	GACNNNNNGTC	1 cut(s)	1161
EarI	CTCTTC	1 cut(s)	1846
Ecl136II	GAGCTC	2 cut(s)	363, 2184
Eco130I	CCWWGG	5 cut(s)	193, 857, 1731, 2224, 2555
Eco147I	AGGCCT	1 cut(s)	2256
Eco24I	GRGCYC	2 cut(s)	365, 2186
Eco47I	GGWCC	2 cut(s)	88, 99
Eco47III	AGCGCT	1 cut(s)	2653
Eco53kI	GAGCTC	2 cut(s)	363, 2184
Eco57I	CTGAAG	4 cut(s)	855, 1040, 2153, 2183
Eco81I	CCTNAGG	1 cut(s)	2269
Eco88I	CYCGRG	1 cut(s)	2284
EcoICRI	GAGCTC	2 cut(s)	363, 2184
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRI	GAATTC	2 cut(s)	1476, 2152
EcoRII	CCWGG	5 cut(s)	578, 1033, 1075, 2190, 2256
EcoT14I	CCWWGG	5 cut(s)	193, 857, 1731, 2224, 2555
EcoT22I	ATGCAT	2 cut(s)	1832, 2456
EcoT38I	GRGCYC	2 cut(s)	365, 2186
ErhI	CCWWGG	5 cut(s)	193, 857, 1731, 2224, 2555
Esp3I	CGTCTC	1 cut(s)	721
FaqI	GGGAC	4 cut(s)	112, 931, 1629, 2682
FauI	CCCGC	3 cut(s)	153, 596, 1722
FblI	GTMKAC	1 cut(s)	2314
FriOI	GRGCYC	2 cut(s)	365, 2186
FspBI	CTAG	6 cut(s)	408, 1307, 1710, 1814, 2247, 2465
GlaI	GCGC	3 cut(s)	139, 980, 2653
HaeII	RGCGCY	1 cut(s)	2655
HaeIII	GGCC	7 cut(s)	144, 893, 1033, 1418, 1720, 2256, 2694
HgaI	GACGC	2 cut(s)	1937, 2273
HhaI	GCGC	3 cut(s)	140, 981, 2654
Hin1I	GRCGYC	1 cut(s)	2265
Hin6I	GCGC	3 cut(s)	138, 979, 2652
HinP1I	GCGC	3 cut(s)	138, 979, 2652
HincII	GTYRAC	1 cut(s)	2089
HindII	GTYRAC	1 cut(s)	2089
HindIII	AAGCTT	1 cut(s)	2639
HphI	GGTGA	1 cut(s)	1866
Hpy166II	GTNNAC	6 cut(s)	413, 1453, 1802, 1901, 2089, 2315
Hpy188III	TCNNGA	7 cut(s)	928, 958, 1127, 1185, 1247, 1961, 2149
Hpy8I	GTNNAC	6 cut(s)	413, 1453, 1802, 1901, 2089, 2315
Hpy99I	CGWCG	3 cut(s)	226, 329, 2534
HpyCH4III	ACNGT	6 cut(s)	1501, 1799, 1918, 2045, 2083, 2327
HpyCH4IV	ACGT	1 cut(s)	2532
HpyF3I	CTNAG	9 cut(s)	423, 665, 1025, 1248, 1542, 1868, 2000, 2235, 2269
HpySE526I	ACGT	1 cut(s)	2532
Hsp92I	GRCGYC	1 cut(s)	2265
HspAI	GCGC	3 cut(s)	138, 979, 2652
KflI	GGGWCCC	1 cut(s)	99
Kpn2I	TCCGGA	1 cut(s)	1126
KpnI	GGTACC	1 cut(s)	389
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	1718
LmnI	GCTCC	2 cut(s)	121, 1196
LweI	GCATC	5 cut(s)	38, 1167, 1620, 2344, 2595
MaeI	CTAG	6 cut(s)	408, 1307, 1710, 1814, 2247, 2465
MaeII	ACGT	1 cut(s)	2532
MaeIII	GTNAC	4 cut(s)	298, 452, 705, 2407
MfeI	CAATTG	1 cut(s)	2400
MflI	RGATCY	4 cut(s)	1018, 1281, 2037, 2194
MhlI	GDGCHC	3 cut(s)	365, 1867, 2186
MlsI	TGGCCA	1 cut(s)	893
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	6 cut(s)	181, 841, 977, 1171, 1651, 2225
MmeI	TCCRAC	3 cut(s)	982, 1510, 1992
Mox20I	TGGCCA	1 cut(s)	893
Mph1103I	ATGCAT	2 cut(s)	1832, 2456
MroI	TCCGGA	1 cut(s)	1126
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	2596
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	8 cut(s)	351, 1167, 1338, 1583, 1922, 1986, 2075, 2172
MslI	CAYNNNNRTG	1 cut(s)	792
Msp20I	TGGCCA	1 cut(s)	893
MspA1I	CMGCKG	6 cut(s)	517, 1024, 1379, 1442, 1666, 1717
MspCI	CTTAAG	1 cut(s)	2074
MunI	CAATTG	1 cut(s)	2400
Mva1269I	GAATGC	4 cut(s)	1465, 1832, 2143, 2456
MvaI	CCWGG	5 cut(s)	580, 1035, 1077, 2192, 2258
MvnI	CGCG	4 cut(s)	487, 603, 1457, 1717
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	6 cut(s)	103, 383, 1241, 1485, 1861, 1878
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	4 cut(s)	100, 101, 387, 1245
NmeAIII	GCCGAG	1 cut(s)	2195
NmuCI	GTSAC	2 cut(s)	452, 705
NsiI	ATGCAT	2 cut(s)	1832, 2456
NspI	RCATGY	6 cut(s)	311, 787, 867, 1834, 1969, 2458
NspV	TTCGAA	1 cut(s)	1040
OliI	CACNNNNGTG	1 cut(s)	792
PaeI	GCATGC	3 cut(s)	311, 787, 867
PaeR7I	CTCGAG	1 cut(s)	2284
PceI	AGGCCT	1 cut(s)	2256
PciI	ACATGT	1 cut(s)	1965
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PctI	GAATGC	4 cut(s)	1465, 1832, 2143, 2456
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	2596
PflMI	CCANNNNNTGG	3 cut(s)	395, 1445, 1472
PleI	GAGTC	6 cut(s)	180, 840, 976, 1170, 1650, 2225
PpsI	GAGTC	6 cut(s)	180, 840, 976, 1170, 1650, 2225
PpuMI	RGGWCCY	1 cut(s)	99
PscI	ACATGT	1 cut(s)	1965
PshBI	ATTAAT	1 cut(s)	1986
Psp124BI	GAGCTC	2 cut(s)	365, 2186
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	5 cut(s)	578, 1033, 1075, 2190, 2256
PspGI	CCWGG	5 cut(s)	578, 1033, 1075, 2190, 2256
PspN4I	GGNNCC	4 cut(s)	100, 101, 387, 1245
PspPI	GGNCC	3 cut(s)	88, 99, 143
PspPPI	RGGWCCY	1 cut(s)	99
PspXI	VCTCGAGB	1 cut(s)	2284
PsrI	GAACNNNNNNTAC	2 cut(s)	1342, 1374
PstI	CTGCAG	5 cut(s)	87, 823, 1576, 1603, 2322
PstNI	CAGNNNCTG	1 cut(s)	1562
PsuI	RGATCY	4 cut(s)	1018, 1281, 2037, 2194
PvuII	CAGCTG	3 cut(s)	1379, 1442, 1666
RsaI	GTAC	5 cut(s)	182, 387, 994, 2080, 2278
RsaNI	GTAC	5 cut(s)	181, 386, 993, 2079, 2277
RseI	CAYNNNNRTG	1 cut(s)	792
SacI	GAGCTC	2 cut(s)	365, 2186
SacII	CCGCGG	1 cut(s)	1718
SaqAI	TTAA	8 cut(s)	351, 1167, 1338, 1583, 1922, 1986, 2075, 2172
Sau96I	GGNCC	3 cut(s)	88, 99, 143
ScaI	AGTACT	1 cut(s)	2080
SchI	GAGTC	6 cut(s)	181, 841, 977, 1171, 1651, 2225
SduI	GDGCHC	3 cut(s)	365, 1867, 2186
SfaNI	GCATC	5 cut(s)	38, 1167, 1620, 2344, 2595
SfcI	CTRYAG	5 cut(s)	83, 819, 1572, 1599, 2318
Sfr274I	CTCGAG	1 cut(s)	2284
Sfr303I	CCGCGG	1 cut(s)	1718
SfuI	TTCGAA	1 cut(s)	1040
SgrBI	CCGCGG	1 cut(s)	1718
SinI	GGWCC	2 cut(s)	88, 99
SlaI	CTCGAG	1 cut(s)	2284
SmiMI	CAYNNNNRTG	1 cut(s)	792
SmlI	CTYRAG	5 cut(s)	2074, 2101, 2179, 2185, 2284
SmoI	CTYRAG	5 cut(s)	2074, 2101, 2179, 2185, 2284
SphI	GCATGC	3 cut(s)	311, 787, 867
SseBI	AGGCCT	1 cut(s)	2256
SspMI	CTAG	6 cut(s)	408, 1307, 1710, 1814, 2247, 2465
SstI	GAGCTC	2 cut(s)	365, 2186
StuI	AGGCCT	1 cut(s)	2256
StyI	CCWWGG	5 cut(s)	193, 857, 1731, 2224, 2555
TaaI	ACNGT	6 cut(s)	1501, 1799, 1918, 2045, 2083, 2327
TaiI	ACGT	1 cut(s)	2535
TaqII	GACCGA	2 cut(s)	1189, 1946
TatI	WGTACW	1 cut(s)	2078
TauI	GCSGC	5 cut(s)	163, 487, 812, 1720, 2073
Tru1I	TTAA	8 cut(s)	351, 1167, 1338, 1583, 1922, 1986, 2075, 2172
Tru9I	TTAA	8 cut(s)	351, 1167, 1338, 1583, 1922, 1986, 2075, 2172
TscAI	CASTG	4 cut(s)	309, 363, 1546, 2136
TseFI	GTSAC	2 cut(s)	452, 705
Tsp45I	GTSAC	2 cut(s)	452, 705
TspGWI	ACGGA	4 cut(s)	13, 469, 670, 2621
TspRI	CASTG	4 cut(s)	309, 363, 1546, 2136
Van91I	CCANNNNNTGG	3 cut(s)	395, 1445, 1472
Vha464I	CTTAAG	1 cut(s)	2074
VpaK11BI	GGWCC	2 cut(s)	88, 99
VspI	ATTAAT	1 cut(s)	1986
XapI	RAATTY	6 cut(s)	115, 246, 875, 1476, 2152, 2564
XceI	RCATGY	6 cut(s)	311, 787, 867, 1834, 1969, 2458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1526
XhoI	CTCGAG	1 cut(s)	2284
XmiI	GTMKAC	1 cut(s)	2314
XmnI	GAANNNNTTC	1 cut(s)	2596
XspI	CTAG	6 cut(s)	408, 1307, 1710, 1814, 2247, 2465
ZrmI	AGTACT	1 cut(s)	2080
Zsp2I	ATGCAT	2 cut(s)	1832, 2456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.