Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19850 AT1G19850 |
| fragaria_vesca | FvH4_2g38760 FvH4_2g38760 FvH4_2g38760 |
| malus_domestica | MD08G1015500.v1.1 MD15G1014400.v1.1 |
| prunus_persica | Prupe.1G368300_v2.0.a1 |
| pyrus_communis | pycom08g01360 pycom15g01250 |
| rosa_chinensis | RchiOBHm_Chr6g0302551 |
| rosa_laevigata | RLG00000011162 |
| rosa_multiflora | Rmu_sc0007717.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165620 |
| rosa_rugosa | Rorug06G0315000 Rorug06G0315000 |
| rosa_samantha | Rh6AG428300 Rh6BG474400 Rh6CG440400 Rh6DG427400 |
| rosa_wichuraiana | Rw6G037050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1656 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 970 |
| AccB1I | GGYRCC | 1 cut(s) | 2388 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 398, 1841 |
| AccI | GTMKAC | 2 cut(s) | 2018, 2368 |
| AciI | CCGC | 2 cut(s) | 539, 1979 |
| AclWI | GGATC | 3 cut(s) | 1016, 2446, 2600 |
| AcoI | YGGCCR | 1 cut(s) | 607 |
| AcsI | RAATTY | 5 cut(s) | 118, 249, 899, 2198, 2618 |
| AcuI | CTGAAG | 8 cut(s) | 425, 828, 858, 1043, 1479, 1917, 1929, 2237 |
| AdeI | CACNNNGTG | 1 cut(s) | 473 |
| AfaI | GTAC | 3 cut(s) | 997, 2119, 2332 |
| AfeI | AGCGCT | 1 cut(s) | 2707 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 129, 170, 398, 1256, 1681, 1841, 2042, 2086 |
| AgsI | TTSAA | 5 cut(s) | 79, 225, 296, 1575, 2429 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1164 |
| AhlI | ACTAGT | 2 cut(s) | 2465, 2560 |
| AjnI | CCWGG | 8 cut(s) | 581, 1036, 1078, 1186, 1344, 1680, 1858, 2300 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2208, 2240 |
| AleI | CACNNNNGTG | 1 cut(s) | 795 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 543, 575 |
| Alw21I | GWGCWC | 5 cut(s) | 46, 1399, 1502, 1601, 2240 |
| Alw26I | GTCTC | 6 cut(s) | 279, 956, 1118, 1172, 1473, 2262 |
| Alw44I | GTGCAC | 2 cut(s) | 1395, 1498 |
| AlwI | GGATC | 3 cut(s) | 1016, 2446, 2600 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1208, 2441 |
| Ama87I | CYCGRG | 2 cut(s) | 2239, 2338 |
| Aor51HI | AGCGCT | 1 cut(s) | 2707 |
| AoxI | GGCC | 9 cut(s) | 111, 145, 607, 1034, 1215, 1413, 1684, 1706, 1862 |
| ApaLI | GTGCAC | 2 cut(s) | 1395, 1498 |
| ApoI | RAATTY | 5 cut(s) | 118, 249, 899, 2198, 2618 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 257, 289 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2650 |
| AspA2I | CCTAGG | 1 cut(s) | 2278 |
| AspLEI | GCGC | 6 cut(s) | 143, 621, 984, 1784, 2637, 2708 |
| AspS9I | GGNCC | 5 cut(s) | 102, 146, 1215, 1684, 1862 |
| AsuC2I | CCSGG | 4 cut(s) | 106, 563, 1244, 1636 |
| AsuHPI | GGTGA | 3 cut(s) | 1175, 1848, 2294 |
| AvaI | CYCGRG | 2 cut(s) | 2239, 2338 |
| AvaII | GGWCC | 1 cut(s) | 102 |
| AvrII | CCTAGG | 1 cut(s) | 2278 |
| AxyI | CCTNAGG | 1 cut(s) | 195 |
| BaeGI | GKGCMC | 3 cut(s) | 1263, 1399, 1502 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 987, 1020, 1183, 1216, 2109, 2142 |
| BalI | TGGCCA | 1 cut(s) | 609 |
| BanI | GGYRCC | 1 cut(s) | 2388 |
| BanII | GRGCYC | 2 cut(s) | 1601, 2240 |
| BauI | CACGAG | 1 cut(s) | 2383 |
| Bbv12I | GWGCWC | 5 cut(s) | 46, 1399, 1502, 1601, 2240 |
| BccI | CCATC | 6 cut(s) | 769, 1026, 1249, 1807, 1903, 2013 |
| BceAI | ACGGC | 1 cut(s) | 1721 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 775, 809 |
| BciT130I | CCWGG | 8 cut(s) | 583, 1038, 1080, 1188, 1346, 1682, 1860, 2302 |
| BciVI | GTATCC | 1 cut(s) | 1184 |
| BclI | TGATCA | 2 cut(s) | 1579, 1987 |
| BcnI | CCSGG | 4 cut(s) | 106, 563, 1244, 1636 |
| BcoDI | GTCTC | 6 cut(s) | 279, 956, 1118, 1172, 1473, 2262 |
| BcuI | ACTAGT | 2 cut(s) | 2465, 2560 |
| BfaI | CTAG | 9 cut(s) | 51, 411, 1310, 1400, 1644, 1698, 2279, 2466, 2561 |
| BfmI | CTRYAG | 3 cut(s) | 1367, 1472, 2372 |
| BfoI | RGCGCY | 2 cut(s) | 622, 2709 |
| BfuI | GTATCC | 1 cut(s) | 1184 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1421 |
| BglII | AGATCT | 2 cut(s) | 333, 2248 |
| BlnI | CCTAGG | 1 cut(s) | 2278 |
| Bme18I | GGWCC | 1 cut(s) | 102 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1164 |
| BmeT110I | CYCGRG | 2 cut(s) | 2239, 2338 |
| BmgT120I | GGNCC | 5 cut(s) | 102, 146, 1215, 1684, 1862 |
| BmiI | GGNNCC | 7 cut(s) | 103, 104, 923, 1042, 1248, 1537, 2390 |
| BmrI | ACTGGG | 1 cut(s) | 1486 |
| BmsI | GCATC | 3 cut(s) | 427, 2649, 2715 |
| BmuI | ACTGGG | 1 cut(s) | 1486 |
| BpmI | CTGGAG | 2 cut(s) | 80, 2284 |
| BpuEI | CTTGAG | 3 cut(s) | 150, 1216, 2254 |
| BpuMI | CCSGG | 4 cut(s) | 106, 563, 1244, 1636 |
| BsaAI | YACGTR | 1 cut(s) | 2569 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1020 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 56, 86 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 129, 170, 398, 1256, 1681, 1841, 2042, 2086 |
| Bse118I | RCCGGY | 1 cut(s) | 143 |
| Bse1I | ACTGG | 8 cut(s) | 359, 640, 1492, 1529, 1591, 1632, 2125, 2523 |
| Bse21I | CCTNAGG | 1 cut(s) | 195 |
| Bse3DI | GCAATG | 2 cut(s) | 1621, 2714 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1020 |
| BseBI | CCWGG | 8 cut(s) | 583, 1038, 1080, 1188, 1346, 1682, 1860, 2302 |
| BseGI | GGATG | 9 cut(s) | 418, 706, 761, 1078, 1799, 2176, 2333, 2608, 2730 |
| BseJI | GATNNNNATC | 1 cut(s) | 1020 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 129, 170, 398, 1256, 1681, 1841, 2042, 2086 |
| BseMI | GCAATG | 2 cut(s) | 1621, 2714 |
| BseNI | ACTGG | 8 cut(s) | 359, 640, 1492, 1529, 1591, 1632, 2125, 2523 |
| BseRI | GAGGAG | 4 cut(s) | 20, 39, 77, 983 |
| BseSI | GKGCMC | 3 cut(s) | 1263, 1399, 1502 |
| BsgI | GTGCAG | 1 cut(s) | 1221 |
| BshFI | GGCC | 9 cut(s) | 113, 147, 609, 1036, 1217, 1415, 1686, 1708, 1864 |
| BshNI | GGYRCC | 1 cut(s) | 2388 |
| BsiHKAI | GWGCWC | 5 cut(s) | 46, 1399, 1502, 1601, 2240 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2239, 2338 |
| BsiSI | CCGG | 5 cut(s) | 106, 144, 562, 1243, 1635 |
| BslFI | GGGAC | 6 cut(s) | 88, 213, 578, 1620, 1987, 2085 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 129, 170, 398, 1256, 1681, 1841, 2042, 2086 |
| BsmAI | GTCTC | 6 cut(s) | 279, 956, 1118, 1172, 1473, 2262 |
| BsmBI | CGTCTC | 1 cut(s) | 279 |
| BsmFI | GGGAC | 6 cut(s) | 88, 213, 578, 1620, 1987, 2085 |
| BsmI | GAATGC | 1 cut(s) | 1823 |
| BsnI | GGCC | 9 cut(s) | 113, 147, 609, 1036, 1217, 1415, 1686, 1708, 1864 |
| BsoBI | CYCGRG | 2 cut(s) | 2239, 2338 |
| Bsp1286I | GDGCHC | 6 cut(s) | 46, 1263, 1399, 1502, 1601, 2240 |
| BspACI | CCGC | 2 cut(s) | 539, 1979 |
| BspANI | GGCC | 9 cut(s) | 113, 147, 609, 1036, 1217, 1415, 1686, 1708, 1864 |
| BspLI | GGNNCC | 7 cut(s) | 103, 104, 923, 1042, 1248, 1537, 2390 |
| BspMAI | CTGCAG | 2 cut(s) | 1476, 2376 |
| BspPI | GGATC | 3 cut(s) | 1016, 2446, 2600 |
| BspT107I | GGYRCC | 1 cut(s) | 2388 |
| BsrDI | GCAATG | 2 cut(s) | 1621, 2714 |
| BsrFI | RCCGGY | 1 cut(s) | 143 |
| BsrI | ACTGG | 8 cut(s) | 359, 640, 1492, 1529, 1591, 1632, 2125, 2523 |
| BssAI | RCCGGY | 1 cut(s) | 143 |
| BssSI | CACGAG | 1 cut(s) | 2383 |
| BssT1I | CCWWGG | 5 cut(s) | 519, 860, 2278, 2421, 2609 |
| Bst2BI | CACGAG | 1 cut(s) | 2383 |
| Bst2UI | CCWGG | 8 cut(s) | 583, 1038, 1080, 1188, 1346, 1682, 1860, 2302 |
| Bst4CI | ACNGT | 4 cut(s) | 48, 206, 605, 2737 |
| Bst6I | CTCTTC | 2 cut(s) | 1278, 2676 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 818, 1417, 2725 |
| BstBAI | YACGTR | 1 cut(s) | 2569 |
| BstDSI | CCRYGG | 3 cut(s) | 488, 604, 1703 |
| BstF5I | GGATG | 9 cut(s) | 418, 706, 761, 1078, 1799, 2176, 2333, 2608, 2730 |
| BstH2I | RGCGCY | 2 cut(s) | 622, 2709 |
| BstHHI | GCGC | 6 cut(s) | 143, 621, 984, 1784, 2637, 2708 |
| BstMAI | GTCTC | 6 cut(s) | 279, 956, 1118, 1172, 1473, 2262 |
| BstNI | CCWGG | 8 cut(s) | 583, 1038, 1080, 1188, 1346, 1682, 1860, 2302 |
| BstNSI | RCATGY | 6 cut(s) | 137, 790, 870, 1825, 2195, 2512 |
| BstSFI | CTRYAG | 3 cut(s) | 1367, 1472, 2372 |
| BstSLI | GKGCMC | 3 cut(s) | 1263, 1399, 1502 |
| BstX2I | RGATCY | 3 cut(s) | 333, 2248, 2438 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1032 |
| BstYI | RGATCY | 3 cut(s) | 333, 2248, 2438 |
| Bsu36I | CCTNAGG | 1 cut(s) | 195 |
| BsuI | GTATCC | 1 cut(s) | 1184 |
| BsuRI | GGCC | 9 cut(s) | 113, 147, 609, 1036, 1217, 1415, 1686, 1708, 1864 |
| BtgI | CCRYGG | 3 cut(s) | 488, 604, 1703 |
| BtsCI | GGATG | 9 cut(s) | 418, 706, 761, 1078, 1799, 2176, 2333, 2608, 2730 |
| BtsIMutI | CAGTG | 5 cut(s) | 211, 1025, 1542, 1941, 2733 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1208, 2441 |
| CfoI | GCGC | 6 cut(s) | 143, 621, 984, 1784, 2637, 2708 |
| Cfr10I | RCCGGY | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 5 cut(s) | 102, 146, 1215, 1684, 1862 |
| Csp6I | GTAC | 3 cut(s) | 996, 2118, 2331 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2065, 2100, 2308, 2343 |
| CviQI | GTAC | 3 cut(s) | 996, 2118, 2331 |
| DraIII | CACNNNGTG | 1 cut(s) | 473 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 970 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 970 |
| EaeI | YGGCCR | 1 cut(s) | 607 |
| Eam1104I | CTCTTC | 2 cut(s) | 1278, 2676 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1164 |
| EarI | CTCTTC | 2 cut(s) | 1278, 2676 |
| Ecl136II | GAGCTC | 2 cut(s) | 1599, 2238 |
| Eco130I | CCWWGG | 5 cut(s) | 519, 860, 2278, 2421, 2609 |
| Eco24I | GRGCYC | 2 cut(s) | 1601, 2240 |
| Eco47I | GGWCC | 1 cut(s) | 102 |
| Eco47III | AGCGCT | 1 cut(s) | 2707 |
| Eco53kI | GAGCTC | 2 cut(s) | 1599, 2238 |
| Eco57I | CTGAAG | 8 cut(s) | 425, 828, 858, 1043, 1479, 1917, 1929, 2237 |
| Eco81I | CCTNAGG | 1 cut(s) | 195 |
| Eco88I | CYCGRG | 2 cut(s) | 2239, 2338 |
| EcoICRI | GAGCTC | 2 cut(s) | 1599, 2238 |
| EcoO109I | RGGNCCY | 2 cut(s) | 102, 1862 |
| EcoRI | GAATTC | 1 cut(s) | 2198 |
| EcoRII | CCWGG | 8 cut(s) | 581, 1036, 1078, 1186, 1344, 1680, 1858, 2300 |
| EcoT14I | CCWWGG | 5 cut(s) | 519, 860, 2278, 2421, 2609 |
| EcoT22I | ATGCAT | 3 cut(s) | 1666, 1823, 2730 |
| EcoT38I | GRGCYC | 2 cut(s) | 1601, 2240 |
| ErhI | CCWWGG | 5 cut(s) | 519, 860, 2278, 2421, 2609 |
| Esp3I | CGTCTC | 1 cut(s) | 279 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2514, 2546 |
| FaqI | GGGAC | 6 cut(s) | 88, 213, 578, 1620, 1987, 2085 |
| FauNDI | CATATG | 1 cut(s) | 1876 |
| FbaI | TGATCA | 2 cut(s) | 1579, 1987 |
| FblI | GTMKAC | 2 cut(s) | 2018, 2368 |
| FokI | GGATG | 9 cut(s) | 405, 713, 748, 1085, 1786, 2183, 2320, 2615, 2737 |
| FriOI | GRGCYC | 2 cut(s) | 1601, 2240 |
| FspBI | CTAG | 9 cut(s) | 51, 411, 1310, 1400, 1644, 1698, 2279, 2466, 2561 |
| GlaI | GCGC | 6 cut(s) | 142, 620, 983, 1783, 2636, 2707 |
| GsuI | CTGGAG | 2 cut(s) | 80, 2284 |
| HaeII | RGCGCY | 2 cut(s) | 622, 2709 |
| HaeIII | GGCC | 9 cut(s) | 113, 147, 609, 1036, 1217, 1415, 1686, 1708, 1864 |
| HapII | CCGG | 5 cut(s) | 106, 144, 562, 1243, 1635 |
| HhaI | GCGC | 6 cut(s) | 143, 621, 984, 1784, 2637, 2708 |
| Hin6I | GCGC | 6 cut(s) | 141, 619, 982, 1782, 2635, 2706 |
| HinP1I | GCGC | 6 cut(s) | 141, 619, 982, 1782, 2635, 2706 |
| HincII | GTYRAC | 1 cut(s) | 1672 |
| HindII | GTYRAC | 1 cut(s) | 1672 |
| HindIII | AAGCTT | 1 cut(s) | 2693 |
| HpaII | CCGG | 5 cut(s) | 106, 144, 562, 1243, 1635 |
| HphI | GGTGA | 3 cut(s) | 1175, 1848, 2294 |
| Hpy166II | GTNNAC | 9 cut(s) | 209, 1397, 1500, 1672, 1793, 2019, 2369, 2566, 2572 |
| Hpy8I | GTNNAC | 9 cut(s) | 209, 1397, 1500, 1672, 1793, 2019, 2369, 2566, 2572 |
| HpyAV | CCTTC | 9 cut(s) | 103, 635, 882, 1161, 1454, 1497, 2157, 2220, 2516 |
| HpyCH4III | ACNGT | 4 cut(s) | 48, 206, 605, 2737 |
| HpyCH4IV | ACGT | 3 cut(s) | 755, 1174, 2568 |
| HpySE526I | ACGT | 3 cut(s) | 755, 1174, 2568 |
| HspAI | GCGC | 6 cut(s) | 141, 619, 982, 1782, 2635, 2706 |
| KflI | GGGWCCC | 1 cut(s) | 102 |
| KroI | GCCGGC | 1 cut(s) | 143 |
| KroNI | GCCGGC | 1 cut(s) | 145 |
| Ksp22I | TGATCA | 2 cut(s) | 1579, 1987 |
| LmnI | GCTCC | 2 cut(s) | 41, 1535 |
| LweI | GCATC | 3 cut(s) | 427, 2649, 2715 |
| MaeI | CTAG | 9 cut(s) | 51, 411, 1310, 1400, 1644, 1698, 2279, 2466, 2561 |
| MaeII | ACGT | 3 cut(s) | 755, 1174, 2568 |
| MaeIII | GTNAC | 5 cut(s) | 301, 756, 2152, 2461, 2468 |
| MboII | GAAGA | 8 cut(s) | 22, 328, 1049, 1265, 1415, 2243, 2495, 2693 |
| MfeI | CAATTG | 2 cut(s) | 2454, 2499 |
| MflI | RGATCY | 3 cut(s) | 333, 2248, 2438 |
| MhlI | GDGCHC | 6 cut(s) | 46, 1263, 1399, 1502, 1601, 2240 |
| MlsI | TGGCCA | 1 cut(s) | 609 |
| MluNI | TGGCCA | 1 cut(s) | 609 |
| MlyI | GAGTC | 8 cut(s) | 184, 980, 1113, 1120, 1174, 1486, 1883, 2251 |
| MmeI | TCCRAC | 2 cut(s) | 620, 1513 |
| Mox20I | TGGCCA | 1 cut(s) | 609 |
| Mph1103I | ATGCAT | 3 cut(s) | 1666, 1823, 2730 |
| MroNI | GCCGGC | 1 cut(s) | 143 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2650 |
| MscI | TGGCCA | 1 cut(s) | 609 |
| MslI | CAYNNNNRTG | 5 cut(s) | 344, 423, 795, 1030, 2165 |
| Msp20I | TGGCCA | 1 cut(s) | 609 |
| MspA1I | CMGCKG | 3 cut(s) | 500, 715, 1382 |
| MspI | CCGG | 5 cut(s) | 106, 144, 562, 1243, 1635 |
| MunI | CAATTG | 2 cut(s) | 2454, 2499 |
| Mva1269I | GAATGC | 1 cut(s) | 1823 |
| MvaI | CCWGG | 8 cut(s) | 583, 1038, 1080, 1188, 1346, 1682, 1860, 2302 |
| NaeI | GCCGGC | 1 cut(s) | 145 |
| NciI | CCSGG | 4 cut(s) | 106, 563, 1244, 1636 |
| NdeI | CATATG | 1 cut(s) | 1876 |
| NgoMIV | GCCGGC | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 7 cut(s) | 103, 104, 923, 1042, 1248, 1537, 2390 |
| NsiI | ATGCAT | 3 cut(s) | 1666, 1823, 2730 |
| NspI | RCATGY | 6 cut(s) | 137, 790, 870, 1825, 2195, 2512 |
| OliI | CACNNNNGTG | 1 cut(s) | 795 |
| PaeI | GCATGC | 4 cut(s) | 137, 790, 870, 2195 |
| PaeR7I | CTCGAG | 2 cut(s) | 2239, 2338 |
| PctI | GAATGC | 1 cut(s) | 1823 |
| PdiI | GCCGGC | 1 cut(s) | 145 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2650 |
| PfeI | GAWTC | 6 cut(s) | 680, 1376, 1441, 1727, 2285, 2646 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 398, 1841 |
| PfoI | TCCNGGA | 2 cut(s) | 104, 561 |
| PleI | GAGTC | 8 cut(s) | 183, 979, 1112, 1120, 1173, 1485, 1883, 2250 |
| PpsI | GAGTC | 8 cut(s) | 183, 979, 1112, 1120, 1173, 1485, 1883, 2250 |
| Ppu21I | YACGTR | 1 cut(s) | 2569 |
| PpuMI | RGGWCCY | 1 cut(s) | 102 |
| PsiI | TTATAA | 1 cut(s) | 1656 |
| Psp124BI | GAGCTC | 2 cut(s) | 1601, 2240 |
| Psp5II | RGGWCCY | 1 cut(s) | 102 |
| Psp6I | CCWGG | 8 cut(s) | 581, 1036, 1078, 1186, 1344, 1680, 1858, 2300 |
| PspGI | CCWGG | 8 cut(s) | 581, 1036, 1078, 1186, 1344, 1680, 1858, 2300 |
| PspN4I | GGNNCC | 7 cut(s) | 103, 104, 923, 1042, 1248, 1537, 2390 |
| PspPI | GGNCC | 5 cut(s) | 102, 146, 1215, 1684, 1862 |
| PspPPI | RGGWCCY | 1 cut(s) | 102 |
| PspXI | VCTCGAGB | 2 cut(s) | 2239, 2338 |
| PstI | CTGCAG | 2 cut(s) | 1476, 2376 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1208, 2441 |
| PsuI | RGATCY | 3 cut(s) | 333, 2248, 2438 |
| PvuII | CAGCTG | 3 cut(s) | 500, 715, 1382 |
| RsaI | GTAC | 3 cut(s) | 997, 2119, 2332 |
| RsaNI | GTAC | 3 cut(s) | 996, 2118, 2331 |
| RseI | CAYNNNNRTG | 5 cut(s) | 344, 423, 795, 1030, 2165 |
| SacI | GAGCTC | 2 cut(s) | 1601, 2240 |
| Sau96I | GGNCC | 5 cut(s) | 102, 146, 1215, 1684, 1862 |
| SchI | GAGTC | 8 cut(s) | 184, 980, 1113, 1120, 1174, 1486, 1883, 2251 |
| SduI | GDGCHC | 6 cut(s) | 46, 1263, 1399, 1502, 1601, 2240 |
| SfaNI | GCATC | 3 cut(s) | 427, 2649, 2715 |
| SfcI | CTRYAG | 3 cut(s) | 1367, 1472, 2372 |
| Sfr274I | CTCGAG | 2 cut(s) | 2239, 2338 |
| SinI | GGWCC | 1 cut(s) | 102 |
| SlaI | CTCGAG | 2 cut(s) | 2239, 2338 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 344, 423, 795, 1030, 2165 |
| SmlI | CTYRAG | 5 cut(s) | 165, 1195, 2233, 2239, 2338 |
| SmoI | CTYRAG | 5 cut(s) | 165, 1195, 2233, 2239, 2338 |
| SpeI | ACTAGT | 2 cut(s) | 2465, 2560 |
| SphI | GCATGC | 4 cut(s) | 137, 790, 870, 2195 |
| SsiI | CCGC | 2 cut(s) | 539, 1979 |
| SspI | AATATT | 1 cut(s) | 1009 |
| SspMI | CTAG | 9 cut(s) | 51, 411, 1310, 1400, 1644, 1698, 2279, 2466, 2561 |
| SstI | GAGCTC | 2 cut(s) | 1601, 2240 |
| StyI | CCWWGG | 5 cut(s) | 519, 860, 2278, 2421, 2609 |
| TaaI | ACNGT | 4 cut(s) | 48, 206, 605, 2737 |
| TaiI | ACGT | 3 cut(s) | 758, 1177, 2571 |
| TaqI | TCGA | 5 cut(s) | 832, 1020, 1163, 2240, 2339 |
| TfiI | GAWTC | 6 cut(s) | 680, 1376, 1441, 1727, 2285, 2646 |
| TscAI | CASTG | 5 cut(s) | 211, 1032, 1549, 1941, 2740 |
| TspDTI | ATGAA | 8 cut(s) | 83, 1101, 1132, 1280, 1445, 1830, 2496, 2705 |
| TspGWI | ACGGA | 1 cut(s) | 505 |
| TspRI | CASTG | 5 cut(s) | 211, 1032, 1549, 1941, 2740 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 398, 1841 |
| VneI | GTGCAC | 2 cut(s) | 1395, 1498 |
| VpaK11BI | GGWCC | 1 cut(s) | 102 |
| XapI | RAATTY | 5 cut(s) | 118, 249, 899, 2198, 2618 |
| XceI | RCATGY | 6 cut(s) | 137, 790, 870, 1825, 2195, 2512 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 602, 932, 1838, 2308 |
| XhoI | CTCGAG | 2 cut(s) | 2239, 2338 |
| XmaJI | CCTAGG | 1 cut(s) | 2278 |
| XmiI | GTMKAC | 2 cut(s) | 2018, 2368 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2650 |
| XspI | CTAG | 9 cut(s) | 51, 411, 1310, 1400, 1644, 1698, 2279, 2466, 2561 |
| Zsp2I | ATGCAT | 3 cut(s) | 1666, 1823, 2730 |