Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19850 AT1G19850 |
| fragaria_vesca | FvH4_2g38760 FvH4_2g38760 FvH4_2g38760 |
| malus_domestica | MD08G1015500.v1.1 MD15G1014400.v1.1 |
| prunus_persica | Prupe.1G368300_v2.0.a1 |
| pyrus_communis | pycom08g01360 pycom15g01250 |
| rosa_chinensis | RchiOBHm_Chr6g0302551 |
| rosa_laevigata | RLG00000011162 |
| rosa_multiflora | Rmu_sc0007717.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00165620 |
| rosa_rugosa | Rorug06G0315000 Rorug06G0315000 |
| rosa_samantha | Rh6AG428300 Rh6BG474400 Rh6CG440400 Rh6DG427400 |
| rosa_wichuraiana | Rw6G037050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1402 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 982 |
| Acc36I | ACCTGC | 2 cut(s) | 987, 1402 |
| Acc65I | GGTACC | 1 cut(s) | 400 |
| AccB1I | GGYRCC | 3 cut(s) | 400, 633, 2837 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 410 |
| AccBSI | CCGCTC | 1 cut(s) | 686 |
| AccI | GTMKAC | 1 cut(s) | 2473 |
| AccII | CGCG | 2 cut(s) | 502, 618 |
| AciI | CCGC | 8 cut(s) | 230, 500, 618, 631, 686, 1063, 1811, 2433 |
| AclI | AACGTT | 1 cut(s) | 2214 |
| AclWI | GGATC | 9 cut(s) | 111, 1028, 1524, 2103, 2361, 2554, 2708, 2749, 2762 |
| AcoI | YGGCCR | 2 cut(s) | 1187, 2854 |
| AcsI | RAATTY | 6 cut(s) | 130, 440, 890, 1231, 1675, 2726 |
| AcuI | CTGAAG | 6 cut(s) | 83, 870, 1055, 1980, 2031, 2342 |
| AfaI | GTAC | 8 cut(s) | 402, 1009, 1021, 1292, 1477, 2437, 2535, 2860 |
| AfeI | AGCGCT | 1 cut(s) | 2239 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 182, 410, 930, 1268, 1400, 1943, 1944 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1176 |
| AhlI | ACTAGT | 2 cut(s) | 1022, 2573 |
| AjiI | CACGTC | 1 cut(s) | 1537 |
| AjnI | CCWGG | 8 cut(s) | 1048, 1090, 1564, 2122, 2349, 2394, 2405, 2415 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2604, 2636 |
| AleI | CACNNNNGTG | 1 cut(s) | 807 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 555, 587 |
| Alw21I | GWGCWC | 2 cut(s) | 58, 2345 |
| Alw26I | GTCTC | 7 cut(s) | 570, 736, 968, 1130, 2162, 2367, 2382 |
| Alw44I | GTGCAC | 1 cut(s) | 54 |
| AlwI | GGATC | 9 cut(s) | 111, 1028, 1524, 2103, 2361, 2554, 2708, 2749, 2762 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1220 |
| Ama87I | CYCGRG | 1 cut(s) | 2344 |
| Aor51HI | AGCGCT | 1 cut(s) | 2239 |
| AoxI | GGCC | 8 cut(s) | 157, 921, 1046, 1187, 1425, 1799, 1964, 2854 |
| ApaLI | GTGCAC | 1 cut(s) | 54 |
| ApoI | RAATTY | 6 cut(s) | 130, 440, 890, 1231, 1675, 2726 |
| AseI | ATTAAT | 1 cut(s) | 2832 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 190 |
| Asp718I | GGTACC | 1 cut(s) | 400 |
| AspA2I | CCTAGG | 1 cut(s) | 2383 |
| AspLEI | GCGC | 5 cut(s) | 155, 504, 996, 1780, 2240 |
| AspS9I | GGNCC | 5 cut(s) | 114, 158, 933, 1964, 2120 |
| AsuC2I | CCSGG | 4 cut(s) | 118, 398, 1458, 1945 |
| AsuHPI | GGTGA | 3 cut(s) | 701, 1383, 2754 |
| AvaI | CYCGRG | 1 cut(s) | 2344 |
| AvaII | GGWCC | 3 cut(s) | 114, 933, 2120 |
| AvrII | CCTAGG | 1 cut(s) | 2383 |
| AxyI | CCTNAGG | 1 cut(s) | 177 |
| BaeGI | GKGCMC | 1 cut(s) | 58 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 999, 1032 |
| BamHI | GGATCC | 1 cut(s) | 2754 |
| BanI | GGYRCC | 3 cut(s) | 400, 633, 2837 |
| BanII | GRGCYC | 2 cut(s) | 14, 2345 |
| BbsI | GAAGAC | 1 cut(s) | 385 |
| Bbv12I | GWGCWC | 2 cut(s) | 58, 2345 |
| BccI | CCATC | 5 cut(s) | 292, 645, 1038, 1198, 2121 |
| BceAI | ACGGC | 5 cut(s) | 264, 757, 1202, 1814, 2841 |
| BciT130I | CCWGG | 8 cut(s) | 1050, 1092, 1566, 2124, 2351, 2396, 2407, 2417 |
| BcnI | CCSGG | 4 cut(s) | 118, 398, 1458, 1945 |
| BcoDI | GTCTC | 7 cut(s) | 570, 736, 968, 1130, 2162, 2367, 2382 |
| BcuI | ACTAGT | 2 cut(s) | 1022, 2573 |
| BfaI | CTAG | 8 cut(s) | 423, 533, 1023, 1322, 1791, 1898, 2384, 2574 |
| BfmI | CTRYAG | 7 cut(s) | 822, 834, 1484, 1680, 1710, 2477, 2766 |
| BfoI | RGCGCY | 1 cut(s) | 2241 |
| BfuAI | ACCTGC | 2 cut(s) | 987, 1402 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 631, 1433 |
| BglII | AGATCT | 2 cut(s) | 1405, 2455 |
| BlnI | CCTAGG | 1 cut(s) | 2383 |
| BmcAI | AGTACT | 1 cut(s) | 1021 |
| Bme18I | GGWCC | 3 cut(s) | 114, 933, 2120 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1176 |
| BmeT110I | CYCGRG | 1 cut(s) | 2344 |
| BmgBI | CACGTC | 1 cut(s) | 1537 |
| BmgT120I | GGNCC | 5 cut(s) | 114, 158, 933, 1964, 2120 |
| BmrI | ACTGGG | 1 cut(s) | 1697 |
| BmsI | GCATC | 1 cut(s) | 2506 |
| BmuI | ACTGGG | 1 cut(s) | 1697 |
| BpiI | GAAGAC | 1 cut(s) | 385 |
| BpmI | CTGGAG | 1 cut(s) | 2389 |
| BpuEI | CTTGAG | 4 cut(s) | 192, 2134, 2359, 2428 |
| BpuMI | CCSGG | 4 cut(s) | 118, 398, 1458, 1945 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1032 |
| BsaJI | CCNNGG | 6 cut(s) | 872, 1091, 1796, 2383, 2394, 2717 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 182, 410, 930, 1268, 1400, 1943, 1944 |
| Bse118I | RCCGGY | 1 cut(s) | 155 |
| Bse1I | ACTGG | 9 cut(s) | 371, 652, 1204, 1607, 1669, 1692, 1924, 2277, 2631 |
| Bse21I | CCTNAGG | 1 cut(s) | 177 |
| Bse3DI | GCAATG | 2 cut(s) | 767, 2826 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1032 |
| BseBI | CCWGG | 8 cut(s) | 1050, 1092, 1566, 2124, 2351, 2396, 2407, 2417 |
| BseDI | CCNNGG | 6 cut(s) | 872, 1091, 1796, 2383, 2394, 2717 |
| BseJI | GATNNNNATC | 1 cut(s) | 1032 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 182, 410, 930, 1268, 1400, 1943, 1944 |
| BseMI | GCAATG | 2 cut(s) | 767, 2826 |
| BseNI | ACTGG | 9 cut(s) | 371, 652, 1204, 1607, 1669, 1692, 1924, 2277, 2631 |
| BseRI | GAGGAG | 2 cut(s) | 35, 2804 |
| BseSI | GKGCMC | 1 cut(s) | 58 |
| BseYI | CCCAGC | 1 cut(s) | 936 |
| BsgI | GTGCAG | 1 cut(s) | 1794 |
| Bsh1236I | CGCG | 2 cut(s) | 502, 618 |
| BshFI | GGCC | 8 cut(s) | 159, 923, 1048, 1189, 1427, 1801, 1966, 2856 |
| BshNI | GGYRCC | 3 cut(s) | 400, 633, 2837 |
| BsiHKAI | GWGCWC | 2 cut(s) | 58, 2345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2344 |
| BsiSI | CCGG | 5 cut(s) | 118, 156, 398, 1457, 1944 |
| BslFI | GGGAC | 4 cut(s) | 100, 946, 1710, 1960 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 182, 410, 930, 1268, 1400, 1943, 1944 |
| BsmAI | GTCTC | 7 cut(s) | 570, 736, 968, 1130, 2162, 2367, 2382 |
| BsmBI | CGTCTC | 1 cut(s) | 736 |
| BsmFI | GGGAC | 4 cut(s) | 100, 946, 1710, 1960 |
| BsmI | GAATGC | 3 cut(s) | 1916, 2302, 2618 |
| BsnI | GGCC | 8 cut(s) | 159, 923, 1048, 1189, 1427, 1801, 1966, 2856 |
| BsoBI | CYCGRG | 1 cut(s) | 2344 |
| Bsp1286I | GDGCHC | 3 cut(s) | 14, 58, 2345 |
| BspACI | CCGC | 8 cut(s) | 230, 500, 618, 631, 686, 1063, 1811, 2433 |
| BspANI | GGCC | 8 cut(s) | 159, 923, 1048, 1189, 1427, 1801, 1966, 2856 |
| BspFNI | CGCG | 2 cut(s) | 502, 618 |
| BspMAI | CTGCAG | 4 cut(s) | 826, 838, 1714, 2481 |
| BspMI | ACCTGC | 2 cut(s) | 987, 1402 |
| BspPI | GGATC | 9 cut(s) | 111, 1028, 1524, 2103, 2361, 2554, 2708, 2749, 2762 |
| BspQI | GCTCTTC | 1 cut(s) | 527 |
| BspT107I | GGYRCC | 3 cut(s) | 400, 633, 2837 |
| BsrBI | CCGCTC | 1 cut(s) | 686 |
| BsrDI | GCAATG | 2 cut(s) | 767, 2826 |
| BsrFI | RCCGGY | 1 cut(s) | 155 |
| BsrI | ACTGG | 9 cut(s) | 371, 652, 1204, 1607, 1669, 1692, 1924, 2277, 2631 |
| BssAI | RCCGGY | 1 cut(s) | 155 |
| BssECI | CCNNGG | 6 cut(s) | 872, 1091, 1796, 2383, 2394, 2717 |
| BssT1I | CCWWGG | 3 cut(s) | 872, 2383, 2717 |
| Bst2UI | CCWGG | 8 cut(s) | 1050, 1092, 1566, 2124, 2351, 2396, 2407, 2417 |
| Bst4CI | ACNGT | 1 cut(s) | 2489 |
| Bst6I | CTCTTC | 2 cut(s) | 527, 975 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 830 |
| BstDSI | CCRYGG | 1 cut(s) | 1796 |
| BstFNI | CGCG | 2 cut(s) | 502, 618 |
| BstH2I | RGCGCY | 1 cut(s) | 2241 |
| BstHHI | GCGC | 5 cut(s) | 155, 504, 996, 1780, 2240 |
| BstMAI | GTCTC | 7 cut(s) | 570, 736, 968, 1130, 2162, 2367, 2382 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 628, 631, 824, 830, 833, 1433, 1807 |
| BstNI | CCWGG | 8 cut(s) | 1050, 1092, 1566, 2124, 2351, 2396, 2407, 2417 |
| BstNSI | RCATGY | 5 cut(s) | 149, 326, 802, 882, 2620 |
| BstSFI | CTRYAG | 7 cut(s) | 822, 834, 1484, 1680, 1710, 2477, 2766 |
| BstSLI | GKGCMC | 1 cut(s) | 58 |
| BstUI | CGCG | 2 cut(s) | 502, 618 |
| BstV2I | GAAGAC | 1 cut(s) | 385 |
| BstX2I | RGATCY | 6 cut(s) | 1033, 1405, 2353, 2455, 2546, 2754 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1044 |
| BstYI | RGATCY | 6 cut(s) | 1033, 1405, 2353, 2455, 2546, 2754 |
| Bsu36I | CCTNAGG | 1 cut(s) | 177 |
| BsuRI | GGCC | 8 cut(s) | 159, 923, 1048, 1189, 1427, 1801, 1966, 2856 |
| BtgI | CCRYGG | 1 cut(s) | 1796 |
| BtrI | CACGTC | 1 cut(s) | 1537 |
| BtsI | GCAGTG | 1 cut(s) | 317 |
| BtsIMutI | CAGTG | 5 cut(s) | 317, 378, 1037, 1197, 1620 |
| BveI | ACCTGC | 2 cut(s) | 987, 1402 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1220 |
| CfoI | GCGC | 5 cut(s) | 155, 504, 996, 1780, 2240 |
| Cfr10I | RCCGGY | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 5 cut(s) | 114, 158, 933, 1964, 2120 |
| Csp6I | GTAC | 8 cut(s) | 401, 1008, 1020, 1291, 1476, 2436, 2534, 2859 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2173, 2208 |
| CviQI | GTAC | 8 cut(s) | 401, 1008, 1020, 1291, 1476, 2436, 2534, 2859 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 982 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1176 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 982 |
| EaeI | YGGCCR | 2 cut(s) | 1187, 2854 |
| Eam1104I | CTCTTC | 2 cut(s) | 527, 975 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1176 |
| EarI | CTCTTC | 2 cut(s) | 527, 975 |
| EciI | GGCGGA | 1 cut(s) | 1078 |
| Ecl136II | GAGCTC | 1 cut(s) | 2343 |
| Eco130I | CCWWGG | 3 cut(s) | 872, 2383, 2717 |
| Eco24I | GRGCYC | 2 cut(s) | 14, 2345 |
| Eco47I | GGWCC | 3 cut(s) | 114, 933, 2120 |
| Eco47III | AGCGCT | 1 cut(s) | 2239 |
| Eco53kI | GAGCTC | 1 cut(s) | 2343 |
| Eco57I | CTGAAG | 6 cut(s) | 83, 870, 1055, 1980, 2031, 2342 |
| Eco81I | CCTNAGG | 1 cut(s) | 177 |
| Eco88I | CYCGRG | 1 cut(s) | 2344 |
| EcoICRI | GAGCTC | 1 cut(s) | 2343 |
| EcoO109I | RGGNCCY | 4 cut(s) | 114, 933, 1964, 2120 |
| EcoRI | GAATTC | 2 cut(s) | 1675, 2726 |
| EcoRII | CCWGG | 8 cut(s) | 1048, 1090, 1564, 2122, 2349, 2394, 2405, 2415 |
| EcoT14I | CCWWGG | 3 cut(s) | 872, 2383, 2717 |
| EcoT22I | ATGCAT | 2 cut(s) | 1916, 2618 |
| EcoT38I | GRGCYC | 2 cut(s) | 14, 2345 |
| ErhI | CCWWGG | 3 cut(s) | 872, 2383, 2717 |
| Esp3I | CGTCTC | 1 cut(s) | 736 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 377, 409 |
| FaqI | GGGAC | 4 cut(s) | 100, 946, 1710, 1960 |
| FauI | CCCGC | 2 cut(s) | 611, 679 |
| FblI | GTMKAC | 1 cut(s) | 2473 |
| FriOI | GRGCYC | 2 cut(s) | 14, 2345 |
| FspBI | CTAG | 8 cut(s) | 423, 533, 1023, 1322, 1791, 1898, 2384, 2574 |
| GlaI | GCGC | 5 cut(s) | 154, 503, 995, 1779, 2239 |
| GsaI | CCCAGC | 1 cut(s) | 940 |
| GsuI | CTGGAG | 1 cut(s) | 2389 |
| HaeII | RGCGCY | 1 cut(s) | 2241 |
| HaeIII | GGCC | 8 cut(s) | 159, 923, 1048, 1189, 1427, 1801, 1966, 2856 |
| HapII | CCGG | 5 cut(s) | 118, 156, 398, 1457, 1944 |
| HhaI | GCGC | 5 cut(s) | 155, 504, 996, 1780, 2240 |
| Hin6I | GCGC | 5 cut(s) | 153, 502, 994, 1778, 2238 |
| HinP1I | GCGC | 5 cut(s) | 153, 502, 994, 1778, 2238 |
| HindIII | AAGCTT | 1 cut(s) | 2801 |
| HpaII | CCGG | 5 cut(s) | 118, 156, 398, 1457, 1944 |
| HphI | GGTGA | 3 cut(s) | 701, 1383, 2754 |
| Hpy166II | GTNNAC | 4 cut(s) | 56, 376, 1741, 2474 |
| Hpy188III | TCNNGA | 8 cut(s) | 101, 973, 1142, 1262, 1514, 2045, 2459, 2752 |
| Hpy8I | GTNNAC | 4 cut(s) | 56, 376, 1741, 2474 |
| HpyCH4III | ACNGT | 1 cut(s) | 2489 |
| HpyCH4IV | ACGT | 3 cut(s) | 1536, 2214, 2694 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 628, 631, 824, 830, 833, 1433, 1807 |
| HpySE526I | ACGT | 3 cut(s) | 1536, 2214, 2694 |
| HspAI | GCGC | 5 cut(s) | 153, 502, 994, 1778, 2238 |
| KflI | GGGWCCC | 2 cut(s) | 114, 933 |
| KpnI | GGTACC | 1 cut(s) | 404 |
| KroI | GCCGGC | 1 cut(s) | 155 |
| KroNI | GCCGGC | 1 cut(s) | 157 |
| LguI | GCTCTTC | 1 cut(s) | 527 |
| LmnI | GCTCC | 1 cut(s) | 1211 |
| LweI | GCATC | 1 cut(s) | 2506 |
| MaeI | CTAG | 8 cut(s) | 423, 533, 1023, 1322, 1791, 1898, 2384, 2574 |
| MaeII | ACGT | 3 cut(s) | 1536, 2214, 2694 |
| MaeIII | GTNAC | 4 cut(s) | 313, 720, 2333, 2569 |
| MbiI | CCGCTC | 1 cut(s) | 686 |
| MboII | GAAGA | 9 cut(s) | 37, 385, 514, 992, 1061, 1709, 1986, 2348, 2603 |
| MfeI | CAATTG | 3 cut(s) | 2037, 2562, 2607 |
| MflI | RGATCY | 6 cut(s) | 1033, 1405, 2353, 2455, 2546, 2754 |
| MhlI | GDGCHC | 3 cut(s) | 14, 58, 2345 |
| MlyI | GAGTC | 6 cut(s) | 370, 992, 1132, 1186, 1498, 2384 |
| MmeI | TCCRAC | 3 cut(s) | 928, 1591, 2533 |
| Mph1103I | ATGCAT | 2 cut(s) | 1916, 2618 |
| MroNI | GCCGGC | 1 cut(s) | 155 |
| MroXI | GAANNNNTTC | 1 cut(s) | 190 |
| MslI | CAYNNNNRTG | 3 cut(s) | 435, 807, 1042 |
| MspA1I | CMGCKG | 2 cut(s) | 1747, 2000 |
| MspI | CCGG | 5 cut(s) | 118, 156, 398, 1457, 1944 |
| MunI | CAATTG | 3 cut(s) | 2037, 2562, 2607 |
| Mva1269I | GAATGC | 3 cut(s) | 1916, 2302, 2618 |
| MvaI | CCWGG | 8 cut(s) | 1050, 1092, 1566, 2124, 2351, 2396, 2407, 2417 |
| MvnI | CGCG | 2 cut(s) | 502, 618 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 628, 631, 824, 830, 833, 1433, 1807 |
| NaeI | GCCGGC | 1 cut(s) | 157 |
| NciI | CCSGG | 4 cut(s) | 118, 398, 1458, 1945 |
| NgoMIV | GCCGGC | 1 cut(s) | 155 |
| NmuCI | GTSAC | 1 cut(s) | 720 |
| NsiI | ATGCAT | 2 cut(s) | 1916, 2618 |
| NspI | RCATGY | 5 cut(s) | 149, 326, 802, 882, 2620 |
| OliI | CACNNNNGTG | 1 cut(s) | 807 |
| PaeI | GCATGC | 4 cut(s) | 149, 326, 802, 882 |
| PaeR7I | CTCGAG | 1 cut(s) | 2344 |
| PaqCI | CACCTGC | 1 cut(s) | 1402 |
| PciSI | GCTCTTC | 1 cut(s) | 527 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 751 |
| PctI | GAATGC | 3 cut(s) | 1916, 2302, 2618 |
| PdiI | GCCGGC | 1 cut(s) | 157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 190 |
| PfeI | GAWTC | 8 cut(s) | 262, 277, 692, 1066, 1203, 1453, 1820, 1991 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 410 |
| PfoI | TCCNGGA | 1 cut(s) | 116 |
| PleI | GAGTC | 6 cut(s) | 369, 991, 1132, 1185, 1497, 2384 |
| PpsI | GAGTC | 6 cut(s) | 369, 991, 1132, 1185, 1497, 2384 |
| PpuMI | RGGWCCY | 3 cut(s) | 114, 933, 2120 |
| PshBI | ATTAAT | 1 cut(s) | 2832 |
| Psp124BI | GAGCTC | 1 cut(s) | 2345 |
| Psp1406I | AACGTT | 1 cut(s) | 2214 |
| Psp5II | RGGWCCY | 3 cut(s) | 114, 933, 2120 |
| Psp6I | CCWGG | 8 cut(s) | 1048, 1090, 1564, 2122, 2349, 2394, 2405, 2415 |
| PspFI | CCCAGC | 1 cut(s) | 936 |
| PspGI | CCWGG | 8 cut(s) | 1048, 1090, 1564, 2122, 2349, 2394, 2405, 2415 |
| PspPI | GGNCC | 5 cut(s) | 114, 158, 933, 1964, 2120 |
| PspPPI | RGGWCCY | 3 cut(s) | 114, 933, 2120 |
| PspXI | VCTCGAGB | 1 cut(s) | 2344 |
| PstI | CTGCAG | 4 cut(s) | 826, 838, 1714, 2481 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1220 |
| PsuI | RGATCY | 6 cut(s) | 1033, 1405, 2353, 2455, 2546, 2754 |
| PvuII | CAGCTG | 2 cut(s) | 1747, 2000 |
| RsaI | GTAC | 8 cut(s) | 402, 1009, 1021, 1292, 1477, 2437, 2535, 2860 |
| RsaNI | GTAC | 8 cut(s) | 401, 1008, 1020, 1291, 1476, 2436, 2534, 2859 |
| RseI | CAYNNNNRTG | 3 cut(s) | 435, 807, 1042 |
| SacI | GAGCTC | 1 cut(s) | 2345 |
| SapI | GCTCTTC | 1 cut(s) | 527 |
| Sau96I | GGNCC | 5 cut(s) | 114, 158, 933, 1964, 2120 |
| ScaI | AGTACT | 1 cut(s) | 1021 |
| SchI | GAGTC | 6 cut(s) | 370, 992, 1132, 1186, 1498, 2384 |
| SduI | GDGCHC | 3 cut(s) | 14, 58, 2345 |
| SfaNI | GCATC | 1 cut(s) | 2506 |
| SfcI | CTRYAG | 7 cut(s) | 822, 834, 1484, 1680, 1710, 2477, 2766 |
| Sfr274I | CTCGAG | 1 cut(s) | 2344 |
| SinI | GGWCC | 3 cut(s) | 114, 933, 2120 |
| SlaI | CTCGAG | 1 cut(s) | 2344 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 435, 807, 1042 |
| SmlI | CTYRAG | 5 cut(s) | 207, 2149, 2338, 2344, 2443 |
| SmoI | CTYRAG | 5 cut(s) | 207, 2149, 2338, 2344, 2443 |
| SpeI | ACTAGT | 2 cut(s) | 1022, 2573 |
| SphI | GCATGC | 4 cut(s) | 149, 326, 802, 882 |
| SsiI | CCGC | 8 cut(s) | 230, 500, 618, 631, 686, 1063, 1811, 2433 |
| SspI | AATATT | 1 cut(s) | 1150 |
| SspMI | CTAG | 8 cut(s) | 423, 533, 1023, 1322, 1791, 1898, 2384, 2574 |
| SstI | GAGCTC | 1 cut(s) | 2345 |
| StyI | CCWWGG | 3 cut(s) | 872, 2383, 2717 |
| TaaI | ACNGT | 1 cut(s) | 2489 |
| TaiI | ACGT | 3 cut(s) | 1539, 2217, 2697 |
| TaqI | TCGA | 5 cut(s) | 844, 972, 1175, 1295, 2345 |
| TatI | WGTACW | 2 cut(s) | 1019, 2533 |
| TauI | GCSGC | 3 cut(s) | 502, 634, 1813 |
| TfiI | GAWTC | 8 cut(s) | 262, 277, 692, 1066, 1203, 1453, 1820, 1991 |
| TscAI | CASTG | 5 cut(s) | 324, 378, 1044, 1204, 1627 |
| TseFI | GTSAC | 1 cut(s) | 720 |
| Tsp45I | GTSAC | 1 cut(s) | 720 |
| TspGWI | ACGGA | 2 cut(s) | 1244, 1278 |
| TspRI | CASTG | 5 cut(s) | 324, 378, 1044, 1204, 1627 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 410 |
| VneI | GTGCAC | 1 cut(s) | 54 |
| VpaK11BI | GGWCC | 3 cut(s) | 114, 933, 2120 |
| VspI | ATTAAT | 1 cut(s) | 2832 |
| XapI | RAATTY | 6 cut(s) | 130, 440, 890, 1231, 1675, 2726 |
| XceI | RCATGY | 5 cut(s) | 149, 326, 802, 882, 2620 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 944, 2120, 2413 |
| XhoI | CTCGAG | 1 cut(s) | 2344 |
| XmaJI | CCTAGG | 1 cut(s) | 2383 |
| XmiI | GTMKAC | 1 cut(s) | 2473 |
| XmnI | GAANNNNTTC | 1 cut(s) | 190 |
| XspI | CTAG | 8 cut(s) | 423, 533, 1023, 1322, 1791, 1898, 2384, 2574 |
| ZrmI | AGTACT | 1 cut(s) | 1021 |
| Zsp2I | ATGCAT | 2 cut(s) | 1916, 2618 |