AT1G19990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013929
Physical Location & Seq
Forward (+)
6935218 .. 6936928
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19990.1

Sequence Viewer

Length: 756 bp
ATGCCACCTTCGGAGGATGTGAAAGCTATGAAGATGAAAGAGGAGGCTGAGGAAGACAATAAGAGCTTGAGTTCCTTTGCGAAGAAGAAACCCACGAACGGTAACAATGCTGGTTCGAAGAAATTGAAGAAAGAAGAGAACGATGACGATGATGATGATAACAAACCTATCAAGTCATCTGTATCTGGGTCTCGAGCTAAGCCAGTGAAGAAGAAGGAAGAGATTGATAAAGACGATGAGAAGAAGCCTGTTTCTAAGAGGAATTCTTCTGTTGGTGTCTCAAAGGAGAATAAGAAACCAGAGAAAGAAGAAGAAGTAAAGAAAAAGAGAGAAAGAAAAGTATATGATTTGCCTGGTCAGAAGAGAGAGCAGCCTGATGAGAGAGATCCACTTAGGATTTTCTACGAGTCACTTTACAAACAAATTCCCACTAGCGACATGGCTCAGATTTGGTTGATGGAGTCTGGATTGCTTCCAGCCGAAAAAGCAAAGAAAGTTCTTGAGAAGAAACTGCAAAAGGGTGGAAAATTAAGTTCTCCAGTAAAATCTGCTGCTTCTACTCCAAGAAGCAACTCCAAATCAGTGACCGTGAAGAAGAAGGAAGTACAAAAGTCGCCATCTGAAGCTTTGTCAAACAAAAAGAAGGGAAATGATTCGAAACCAACCACGAAGAAGAGGAAGAAGAACTCTGATGATGACGACTCAGATGATGATTTTTTGGCTAGCAGAGTCTCTAAAAAGGCTAGAGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

28.24

Weight (kDa)

9.65

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 2 cut(s) 262, 423
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 4 cut(s) 26, 66, 197, 626
AluI AGCT 4 cut(s) 26, 66, 197, 626
Alw26I GTCTC 3 cut(s) 195, 283, 736
AlwI GGATC 1 cut(s) 380
Ama87I CYCGRG 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 370, 551
ApoI RAATTY 2 cut(s) 262, 423
Asp700I GAANNNNTTC 1 cut(s) 652
AsuII TTCGAA 2 cut(s) 116, 656
AsuNHI GCTAGC 1 cut(s) 722
AvaI CYCGRG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 382, 538
BccI CCATC 2 cut(s) 451, 625
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 3 cut(s) 195, 283, 736
BfaI CTAG 3 cut(s) 432, 723, 744
BisI GCNGC 2 cut(s) 371, 552
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 372, 553
Bme1390I CCNGG 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 354
BmtI GCTAGC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 2 cut(s) 116, 656
BpuEI CTTGAG 2 cut(s) 88, 521
BsaI GGTCTC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 203, 539
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 3 cut(s) 39, 458, 717
BseNI ACTGG 2 cut(s) 203, 539
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 382, 538
BsiHKCI CYCGRG 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 3 cut(s) 195, 283, 736
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 192
Bsp119I TTCGAA 2 cut(s) 116, 656
Bsp143I GATC 1 cut(s) 385
Bsp1720I GCTNAGC 1 cut(s) 198
BspCNI CTCAG 3 cut(s) 40, 457, 716
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 1 cut(s) 380
BspT104I TTCGAA 2 cut(s) 116, 656
BspTNI GGTCTC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 203, 539
BssMI GATC 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 101, 589
Bst6I CTCTTC 4 cut(s) 129, 213, 356, 668
BstBI TTCGAA 2 cut(s) 116, 656
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 6 cut(s) 48, 198, 255, 392, 444, 703
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 3 cut(s) 195, 283, 736
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 485
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 382, 538
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 210, 588
Cac8I GCNNGC 1 cut(s) 724
Csp6I GTAC 1 cut(s) 605
CviAII CATG 1 cut(s) 439
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 6 cut(s) 48, 198, 255, 392, 444, 703
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 4 cut(s) 129, 213, 356, 668
EarI CTCTTC 4 cut(s) 129, 213, 356, 668
Eco31I GGTCTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 442
FaiI YATR 4 cut(s) 29, 343, 345, 440
FatI CATG 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 371, 552
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 371, 552
FspBI CTAG 3 cut(s) 432, 723, 744
GluI GCNGC 2 cut(s) 371, 552
GsuI CTGGAG 1 cut(s) 522
Hin1II CATG 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 5 cut(s) 407, 461, 653, 701, 729
Hpy188I TCNGA 6 cut(s) 13, 360, 447, 622, 691, 706
Hpy188III TCNNGA 3 cut(s) 192, 465, 500
HpyAV CCTTC 4 cut(s) 18, 208, 592, 637
HpyCH4III ACNGT 2 cut(s) 101, 589
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 485
HpyF3I CTNAG 6 cut(s) 48, 198, 255, 392, 444, 703
Hsp92II CATG 1 cut(s) 442
Kzo9I GATC 1 cut(s) 385
Lsp1109I GCAGC 2 cut(s) 382, 538
MaeI CTAG 3 cut(s) 432, 723, 744
MaeIII GTNAC 3 cut(s) 101, 408, 583
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MflI RGATCY 1 cut(s) 385
MluCI AATT 4 cut(s) 122, 262, 423, 527
MlyI GAGTC 4 cut(s) 416, 470, 695, 738
MnlI CCTC 6 cut(s) 7, 34, 37, 43, 252, 669
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 485
NdeII GATC 1 cut(s) 385
NheI GCTAGC 1 cut(s) 722
NlaIII CATG 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 408, 583
NspV TTCGAA 2 cut(s) 116, 656
PaeR7I CTCGAG 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 2 cut(s) 372, 553
PleI GAGTC 4 cut(s) 415, 469, 695, 737
PpsI GAGTC 4 cut(s) 415, 469, 695, 737
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 2 cut(s) 371, 552
Sau3AI GATC 1 cut(s) 385
SchI GAGTC 4 cut(s) 416, 470, 695, 738
ScrFI CCNGG 1 cut(s) 354
SetI ASST 6 cut(s) 10, 28, 68, 169, 199, 628
Sfr274I CTCGAG 1 cut(s) 192
SfuI TTCGAA 2 cut(s) 116, 656
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 3 cut(s) 67, 192, 500
SmoI CTYRAG 3 cut(s) 67, 192, 500
Sse9I AATT 4 cut(s) 122, 262, 423, 527
SspMI CTAG 3 cut(s) 432, 723, 744
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 101, 589
TaqI TCGA 3 cut(s) 116, 193, 656
TasI AATT 4 cut(s) 122, 262, 423, 527
TatI WGTACW 1 cut(s) 604
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 2 cut(s) 210, 588
TseFI GTSAC 2 cut(s) 408, 583
TseI GCWGC 2 cut(s) 370, 551
Tsp45I GTSAC 2 cut(s) 408, 583
TspDTI ATGAA 2 cut(s) 44, 50
TspRI CASTG 2 cut(s) 210, 588
XapI RAATTY 2 cut(s) 262, 423
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XhoI CTCGAG 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 3 cut(s) 432, 723, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.