pycom08g01110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013929
Physical Location & Seq
Reverse (-)
859648 .. 861660
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01110.1

Sequence Viewer

Length: 873 bp
ATGCCGCCAAAAGATGAGAAGCCTGCGAAGCCGCGGAGGGAGGTGAAAGAGGAAGAAAACGACGACGATGAGAAGAGCTTGGGTTCGATTGCGTTGGAGCGCAAGAAGAAGCAACCCACGAAAAGCAGTGGCAATGCGAATGGAACGGCGAAATCTACGGGCAGAGAAGCCGCTAAGGTGAAGAAGGAGGACAAGATGGACCAAGATTGGGATAAGGCCACGAAGGCGAAACCTAAACAAGAAGCCAGAGTGAAGAAGGAGGAGAACGGCGGCGATAGCAACGAGGAATTGGGTTTGAAGCCGAGAAAGGGTTCGAATTCAAAGCCCCAAAAGGAAATCAAGAACAACAAGGTGAAGAAAATGGAGGAGGAGGAGGAGGAGGAGAAGGGGAAGAAGAGGAAGGCGTCGGAGGCTGCGACAGAGGAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAAGGACCCTCCCGAGAAGAAGGACCCACTTAGGCAATTCTACGAGTCGCTTCACCAGCAAATTCCAAGTAGCGAAATGGCGCAGTTCTGGATGATGGAGTACGGTTTGCTACCCAAAGTGGAGGCAGAGAAAGTGTTTGAGAAGAAGCAGAAGAAGAGTCAACTGCAAAAGCTCACTTCTCCAACAAAATCTGTATCTTCTGTAAAGACGAGCACAAAGTCAGTTACTGTTAAGAAGAACACAGCATCACCCGCAGCGCCTTCAAATAACAAGAAACCGACAACAGTCTCCAAAAGCGCAACAAACCAGTCGAAGAAGCGGAAGACGGAAGATAGCAGCTCAGAGAGAGACTCTGATGATGACTTTGTGGCCAGAATAGTAAAGAAGAAGCAAGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

32.76

Weight (kDa)

9.68

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 7 cut(s) 5, 32, 34, 171, 270, 723, 790
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 2 cut(s) 316, 531
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 2 cut(s) 208, 308
AgsI TTSAA 3 cut(s) 298, 321, 735
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 4 cut(s) 78, 643, 810, 869
AluI AGCT 4 cut(s) 78, 643, 810, 869
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 2 cut(s) 763, 813
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 2 cut(s) 216, 840
ApeKI GCWGC 4 cut(s) 413, 725, 807, 866
ApoI RAATTY 2 cut(s) 316, 531
Asp700I GAANNNNTTC 1 cut(s) 310
AspLEI GCGC 4 cut(s) 102, 553, 730, 770
AspS9I GGNCC 3 cut(s) 199, 475, 493
AsuHPI GGTGA 5 cut(s) 55, 190, 364, 515, 711
AsuII TTCGAA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 3 cut(s) 199, 475, 493
BalI TGGCCA 1 cut(s) 842
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 3 cut(s) 400, 737, 819
BccI CCATC 2 cut(s) 190, 559
BceAI ACGGC 2 cut(s) 162, 283
BciT130I CCWGG 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 763, 813
BfoI RGCGCY 1 cut(s) 731
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 8 cut(s) 5, 32, 171, 271, 414, 726, 808, 867
BlsI GCNGC 8 cut(s) 6, 33, 172, 272, 415, 727, 809, 868
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 3 cut(s) 199, 475, 493
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 3 cut(s) 199, 475, 493
BmiI GGNNCC 2 cut(s) 477, 495
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 725
BoxI GACNNNNGTC 1 cut(s) 755
BpiI GAAGAC 1 cut(s) 800
BplI GAGNNNNNCTC 2 cut(s) 806, 838
Bpu10I CCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 308
Bse1I ACTGG 1 cut(s) 778
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 208, 308
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 8 cut(s) 275, 380, 383, 386, 389, 392, 395, 437
BseXI GCAGC 3 cut(s) 400, 737, 819
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 218, 842
BsiHKAI GWGCWC 1 cut(s) 686
BsiHKCI CYCGRG 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 208, 308
BsmAI GTCTC 2 cut(s) 763, 813
BsnI GGCC 2 cut(s) 218, 842
BsoBI CYCGRG 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 686
BspACI CCGC 7 cut(s) 5, 32, 34, 171, 270, 723, 790
BspANI GGCC 2 cut(s) 218, 842
BspCNI CTCAG 1 cut(s) 824
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 477, 495
BspQI GCTCTTC 1 cut(s) 68
BspT104I TTCGAA 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 778
BssECI CCNNGG 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 3 cut(s) 575, 700, 757
Bst6I CTCTTC 4 cut(s) 68, 389, 428, 620
BstACI GRCGYC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 24, 864
BstDEI CTNAG 4 cut(s) 174, 500, 811, 870
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 34
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 4 cut(s) 102, 553, 730, 770
BstMAI GTCTC 2 cut(s) 763, 813
BstMWI GCNNNNNNNGC 6 cut(s) 28, 224, 276, 410, 526, 722
BstNI CCWGG 1 cut(s) 462
BstPAI GACNNNNGTC 1 cut(s) 755
BstSCI CCNGG 1 cut(s) 460
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 400, 737, 819
BstV2I GAAGAC 1 cut(s) 800
BsuRI GGCC 2 cut(s) 218, 842
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 24, 864
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 4 cut(s) 102, 553, 730, 770
Cfr13I GGNCC 3 cut(s) 199, 475, 493
Cfr42I CCGCGG 1 cut(s) 35
CseI GACGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 571
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 4 cut(s) 174, 500, 811, 870
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 4 cut(s) 68, 389, 428, 620
EarI CTCTTC 4 cut(s) 68, 389, 428, 620
Eco47I GGWCC 3 cut(s) 199, 475, 493
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 2 cut(s) 475, 493
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 460
FaiI YATR 1 cut(s) 453
FauI CCCGC 1 cut(s) 730
Fnu4HI GCNGC 8 cut(s) 5, 32, 171, 271, 414, 726, 808, 867
FokI GGATG 1 cut(s) 574
Fsp4HI GCNGC 8 cut(s) 5, 32, 171, 271, 414, 726, 808, 867
GlaI GCGC 4 cut(s) 101, 552, 729, 769
GluI GCNGC 8 cut(s) 5, 32, 171, 271, 414, 726, 808, 867
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 2 cut(s) 218, 842
HgaI GACGC 1 cut(s) 393
HhaI GCGC 4 cut(s) 102, 553, 730, 770
Hin1I GRCGYC 1 cut(s) 404
Hin6I GCGC 4 cut(s) 100, 551, 728, 768
HinP1I GCGC 4 cut(s) 100, 551, 728, 768
HincII GTYRAC 1 cut(s) 632
HindII GTYRAC 1 cut(s) 632
HinfI GANTC 3 cut(s) 515, 628, 821
HphI GGTGA 5 cut(s) 55, 190, 364, 515, 711
Hpy166II GTNNAC 1 cut(s) 632
Hpy188I TCNGA 4 cut(s) 409, 468, 814, 826
Hpy188III TCNNGA 3 cut(s) 340, 482, 559
Hpy8I GTNNAC 1 cut(s) 632
Hpy99I CGWCG 3 cut(s) 65, 68, 409
HpyAV CCTTC 9 cut(s) 178, 217, 250, 379, 394, 439, 466, 484, 741
HpyCH4III ACNGT 3 cut(s) 575, 700, 757
HpyCH4V TGCA 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 224, 276, 410, 526, 722
HpyF3I CTNAG 4 cut(s) 174, 500, 811, 870
Hsp92I GRCGYC 1 cut(s) 404
HspAI GCGC 4 cut(s) 100, 551, 728, 768
KspI CCGCGG 1 cut(s) 35
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 36, 259, 447, 474, 539, 544, 791, 856
Lsp1109I GCAGC 3 cut(s) 400, 737, 819
LweI GCATC 1 cut(s) 725
MaeIII GTNAC 1 cut(s) 694
MhlI GDGCHC 1 cut(s) 686
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 4 cut(s) 287, 316, 506, 531
MluNI TGGCCA 1 cut(s) 842
MlyI GAGTC 3 cut(s) 524, 637, 815
MmeI TCCRAC 3 cut(s) 75, 387, 677
Mox20I TGGCCA 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 842
MseI TTAA 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 842
MspA1I CMGCKG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 6 cut(s) 28, 224, 276, 410, 526, 722
NlaIV GGNNCC 2 cut(s) 477, 495
NmeAIII GCCGAG 1 cut(s) 327
NspV TTCGAA 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 310
PkrI GCNGC 8 cut(s) 6, 33, 172, 272, 415, 727, 809, 868
PleI GAGTC 3 cut(s) 523, 636, 815
PpsI GAGTC 3 cut(s) 523, 636, 815
PpuMI RGGWCCY 2 cut(s) 475, 493
PshAI GACNNNNGTC 1 cut(s) 755
Psp5II RGGWCCY 2 cut(s) 475, 493
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 477, 495
PspPI GGNCC 3 cut(s) 199, 475, 493
PspPPI RGGWCCY 2 cut(s) 475, 493
PstNI CAGNNNCTG 1 cut(s) 698
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SacII CCGCGG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 8 cut(s) 5, 32, 171, 271, 414, 726, 808, 867
Sau96I GGNCC 3 cut(s) 199, 475, 493
SchI GAGTC 3 cut(s) 524, 637, 815
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 686
SetI ASST 9 cut(s) 45, 80, 180, 235, 354, 450, 645, 812, 871
SfaNI GCATC 1 cut(s) 725
Sfr303I CCGCGG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 314
SgrBI CCGCGG 1 cut(s) 35
SinI GGWCC 3 cut(s) 199, 475, 493
Sse9I AATT 4 cut(s) 287, 316, 506, 531
SsiI CCGC 7 cut(s) 5, 32, 34, 171, 270, 723, 790
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 3 cut(s) 575, 700, 757
TaqI TCGA 3 cut(s) 86, 314, 782
TasI AATT 4 cut(s) 287, 316, 506, 531
TauI GCSGC 4 cut(s) 7, 34, 173, 273
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 133
TseI GCWGC 4 cut(s) 413, 725, 807, 866
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 3 cut(s) 199, 475, 493
XapI RAATTY 2 cut(s) 316, 531
XmnI GAANNNNTTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.