Rh6BG471300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013929
Physical Location & Seq
Reverse (-)
67901219 .. 67903680
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG471300.1

Sequence Viewer

Length: 933 bp
ATGCCTTTACCCCCAAAAGACTTTACCTTTTTGGTCTCAATTTCTGATACCCACCGTGAAACCCTAAAGATGGCCTCCGACGACGAGGAGAAGTCGCTGGGTTCGTTGATCCGCAACAAGAAGAAACAAAATGGGAATGGAGCAGCGGCAATAGCCAAGCCGAAGGTGAAGAAAGAAGAGCTCGATAACGGTTCTGATAGCCCAAAGCCCAAGCCCAGAAACCCAATTGTGAAAAAGCAAGAGAAGCAGAACCAAAGCGATGATGAAGATGAGAAGCCAATTGGTCGCACGAAGCCCAGAAAAGCCCCAGTTAAGAAGGAAGACAAGGACGATGATAGCGATGACGATAAGCCCCTAGCTAAGAAAAGCTCCAATTCTAAGGCCGATAAGAATGTGAAGAGAAAGAGAGAAGAGGCGGCGGCGGCGACACCGGAGAAGAAGAGGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAGAGACGCTCCTGAAGAGAGAGACCCACTTCGGATTTTTTACGAGACGCTTTATGAGCAGCTTCCCAATAGCGAAATGGCACAGGTCTGGCTGATGGAGTCGGGTTTGCTACCTAAAGAGGAGGCAAAGAAAGTGTTTGAGAAGAAGCAGAATAGTCGTCACCTTCAAAAAATCAGTTCTCCAATTAAAGCTTTAGCTTCTGGAAGGAAGACCACAACAGTCAGTACTACAAGTAGAGGTGGATCTTCTGTAAAGAAGACCACAACATCAGTTACTGTCAAGAAAAAGACAACATCAACCCCGGTTTCCTCAAATAAAAAGAAGCCAACACCAGCCTCCAAGGGCGCATCAAATCTGTCTAAGAAGCGGAAGAAAGATGATGAAAGCTCAGACAGCGAGTCTGATGATGACTTTGTGATATCCGAGAGACCAAAGAAAAGGCAGGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.65

Weight (kDa)

9.77

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 112, 146, 416, 419, 422, 847
AclWI GGATC 2 cut(s) 103, 730
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 647
AhdI GACNNNNNGTC 1 cut(s) 877
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 8 cut(s) 181, 359, 369, 541, 671, 677, 867, 929
AluI AGCT 8 cut(s) 181, 359, 369, 541, 671, 677, 867, 929
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 5 cut(s) 40, 477, 495, 518, 901
AlwI GGATC 2 cut(s) 103, 730
AlwNI CAGNNNCTG 1 cut(s) 755
AoxI GGCC 2 cut(s) 72, 381
ApeKI GCWGC 3 cut(s) 143, 538, 926
AspLEI GCGC 1 cut(s) 827
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 2 cut(s) 178, 632
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 3 cut(s) 327, 695, 743
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 155, 550
BccI CCATC 2 cut(s) 64, 568
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 471
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 5 cut(s) 40, 477, 495, 518, 901
BfaI CTAG 1 cut(s) 356
BisI GCNGC 7 cut(s) 144, 147, 417, 420, 423, 539, 927
BlsI GCNGC 7 cut(s) 145, 148, 418, 421, 424, 540, 928
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 2 cut(s) 471, 782
BmeRI GACNNNNNGTC 1 cut(s) 877
BmrFI CCNGG 2 cut(s) 471, 782
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 3 cut(s) 327, 695, 743
BplI GAGNNNNNCTC 2 cut(s) 472, 504
BpuMI CCSGG 1 cut(s) 782
BsaI GGTCTC 3 cut(s) 40, 495, 901
BsaJI CCNNGG 2 cut(s) 780, 819
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 2 cut(s) 780, 819
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 3 cut(s) 101, 457, 614
BseXI GCAGC 2 cut(s) 155, 550
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 74, 383
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 431, 782
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 5 cut(s) 40, 477, 495, 518, 901
BsmBI CGTCTC 2 cut(s) 477, 518
BsnI GGCC 2 cut(s) 74, 383
Bso31I GGTCTC 3 cut(s) 40, 495, 901
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 108, 722
BspACI CCGC 6 cut(s) 112, 146, 416, 419, 422, 847
BspANI GGCC 2 cut(s) 74, 383
BspCNI CTCAG 1 cut(s) 881
BspPI GGATC 2 cut(s) 103, 730
BspQI GCTCTTC 1 cut(s) 171
BspTNI GGTCTC 3 cut(s) 40, 495, 901
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 780, 819
BssMI GATC 2 cut(s) 108, 722
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 4 cut(s) 56, 191, 700, 757
Bst6I CTCTTC 6 cut(s) 171, 392, 405, 434, 473, 489
BstC8I GCNNGC 1 cut(s) 924
BstDEI CTNAG 5 cut(s) 360, 378, 840, 868, 930
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 2 cut(s) 111, 725
BstMAI GTCTC 5 cut(s) 40, 477, 495, 518, 901
BstMBI GATC 2 cut(s) 108, 722
BstMWI GCNNNNNNNGC 5 cut(s) 152, 244, 422, 535, 873
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 2 cut(s) 469, 780
BstV1I GCAGC 2 cut(s) 155, 550
BstV2I GAAGAC 3 cut(s) 327, 695, 743
BstX2I RGATCY 1 cut(s) 722
BstYI RGATCY 1 cut(s) 722
BsuRI GGCC 2 cut(s) 74, 383
BtgZI GCGATG 2 cut(s) 273, 354
Cac8I GCNNGC 1 cut(s) 924
CaiI CAGNNNCTG 1 cut(s) 755
CfoI GCGC 1 cut(s) 827
CseI GACGC 2 cut(s) 494, 535
Csp6I GTAC 1 cut(s) 705
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 5 cut(s) 360, 378, 840, 868, 930
DpnI GATC 2 cut(s) 110, 724
DpnII GATC 2 cut(s) 108, 722
DriI GACNNNNNGTC 1 cut(s) 877
Eam1104I CTCTTC 6 cut(s) 171, 392, 405, 434, 473, 489
Eam1105I GACNNNNNGTC 1 cut(s) 877
EarI CTCTTC 6 cut(s) 171, 392, 405, 434, 473, 489
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 819
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 3 cut(s) 40, 495, 901
Eco32I GATATC 1 cut(s) 900
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 900
EcoT14I CCWWGG 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 2 cut(s) 477, 518
FaiI YATR 2 cut(s) 462, 534
Fnu4HI GCNGC 7 cut(s) 144, 147, 417, 420, 423, 539, 927
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 7 cut(s) 144, 147, 417, 420, 423, 539, 927
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 826
GluI GCNGC 7 cut(s) 144, 147, 417, 420, 423, 539, 927
GsaI CCCAGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 74, 383
HapII CCGG 2 cut(s) 431, 782
HgaI GACGC 2 cut(s) 494, 535
HhaI GCGC 1 cut(s) 827
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 2 cut(s) 578, 878
HpaII CCGG 2 cut(s) 431, 782
HphI GGTGA 2 cut(s) 178, 632
Hpy188I TCNGA 8 cut(s) 46, 79, 196, 477, 513, 871, 883, 904
Hpy188III TCNNGA 3 cut(s) 491, 681, 760
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 5 cut(s) 157, 310, 448, 653, 678
HpyCH4III ACNGT 4 cut(s) 56, 191, 700, 757
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 244, 422, 535, 873
HpyF3I CTNAG 5 cut(s) 360, 378, 840, 868, 930
HspAI GCGC 1 cut(s) 825
Kzo9I GATC 2 cut(s) 108, 722
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 140, 374, 493
Lsp1109I GCAGC 2 cut(s) 155, 550
LweI GCATC 1 cut(s) 836
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 638, 751
MalI GATC 2 cut(s) 110, 724
MboI GATC 2 cut(s) 108, 722
MfeI CAATTG 2 cut(s) 225, 279
MflI RGATCY 1 cut(s) 722
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 39, 225, 279, 373, 663
MlyI GAGTC 2 cut(s) 587, 887
MmeI TCCRAC 1 cut(s) 102
MseI TTAA 2 cut(s) 312, 666
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 431, 782
MspR9I CCNGG 2 cut(s) 471, 782
MunI CAATTG 2 cut(s) 225, 279
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 5 cut(s) 152, 244, 422, 535, 873
NciI CCSGG 1 cut(s) 782
NdeII GATC 2 cut(s) 108, 722
NmuCI GTSAC 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 336
PkrI GCNGC 7 cut(s) 145, 148, 418, 421, 424, 540, 928
PleI GAGTC 2 cut(s) 586, 886
PpsI GAGTC 2 cut(s) 586, 886
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 469
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 312, 666
SatI GCNGC 7 cut(s) 144, 147, 417, 420, 423, 539, 927
Sau3AI GATC 2 cut(s) 108, 722
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 2 cut(s) 587, 887
ScrFI CCNGG 2 cut(s) 471, 782
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 1 cut(s) 836
Sse9I AATT 5 cut(s) 39, 225, 279, 373, 663
SsiI CCGC 6 cut(s) 112, 146, 416, 419, 422, 847
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 469, 780
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 4 cut(s) 56, 191, 700, 757
TaqI TCGA 1 cut(s) 183
TasI AATT 5 cut(s) 39, 225, 279, 373, 663
TatI WGTACW 1 cut(s) 704
TauI GCSGC 4 cut(s) 149, 419, 422, 425
Tru1I TTAA 2 cut(s) 312, 666
Tru9I TTAA 2 cut(s) 312, 666
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 3 cut(s) 143, 538, 926
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 2 cut(s) 279, 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.