Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000460.1

Orthogroup ID

OG0013929

Physical Location & Seq

Genomic Coordinates Forward (+)

62472 .. 64340

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000460.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggcctccgacgacgacgagaagtcgctgggttcgttgatccgcaacaagaagaaacaaaatgggaatggagcagcggcaatagcgaagccgaaggtgaagaaagaagagctcaataacggttctgatagcccaaagcccaagcccagaaacccacttgtgaaaaagcaagagaagcagaacgaaagcgatgatgaagatgagaagccaattggtcgcacgaagcccagaaaagccccagttaagaaggaagacaaggacgatgatagcgatgatgataagcccctagctaagaaaagctccaattctaaggccgataagaatgtgaagagaaagagagaagaggcggcggcgacaccggagaagaagaagagggagaagaaggtgtatgatttgcctggtcagaagagagacgctcctgcagagagagacccacttaggattttttacgagacgctttatgagcagcttcccaatagcgaaatggcacaggtctggctgatggagtcgggtttgctacctaaagaggaggcaaagaaagtgtttgagaagaagcagaatagtcgtcaccttcaaaaaatcagttctccaattaaagctgtagcttctggaaggaagaccacaacagtcagtacttcaaatagaggtggatcttctgtaaagaagaccacaacatcagttactgtcaagaaaaatacaacatcaaccccggtttcctcaaataaaaagaagccaacaccagcctccaagggcgcatcaaatctgtctaagaagcagaagaaaaatgatgaaagctcagagagcgagtctgatgatgactttgtgatatccgagagaccaaagaaaaggcaggcagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.8

Weight (kDa)

9.8

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19990
fragaria_vesca	FvH4_2g38430
malus_domestica	MD08G1013000.v1.1
prunus_persica	Prupe.1G365000_v2.0.a1
pyrus_communis	pycom08g01110 pycom15g01060
rosa_chinensis	RchiOBHm_Chr6g0302881
rosa_laevigata	RLG00000011128 RLG00000021252
rosa_multiflora	Rmu_ssc0000460.1_g000012
rosa_roxburghii	Rroxscaffold_7G00165200
rosa_rugosa	Rorug06G0317900
rosa_samantha	Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana	Rw6G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	43, 77, 347, 350
AclWI	GGATC	2 cut(s)	34, 658
AfaI	GTAC	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	575, 639
AhdI	GACNNNNNGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	397
AluBI	AGCT	8 cut(s)	112, 290, 300, 469, 599, 605, 795, 857
AluI	AGCT	8 cut(s)	112, 290, 300, 469, 599, 605, 795, 857
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	4 cut(s)	405, 423, 446, 829
AlwI	GGATC	2 cut(s)	34, 658
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	3, 312
ApeKI	GCWGC	3 cut(s)	74, 466, 854
AspLEI	GCGC	1 cut(s)	755
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	2 cut(s)	109, 560
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	3 cut(s)	258, 623, 671
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	86, 478
BccI	CCATC	1 cut(s)	496
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	4 cut(s)	405, 423, 446, 829
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	420, 600
BisI	GCNGC	6 cut(s)	75, 78, 348, 351, 467, 855
BlsI	GCNGC	6 cut(s)	76, 79, 349, 352, 468, 856
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	399, 710
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	399, 710
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	764
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	3 cut(s)	258, 623, 671
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpuMI	CCSGG	1 cut(s)	710
BsaI	GGTCTC	2 cut(s)	423, 829
BsaJI	CCNNGG	2 cut(s)	708, 747
BsaWI	WCCGGW	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	708, 747
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	86, 478
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	5, 314
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	359, 710
BsmAI	GTCTC	4 cut(s)	405, 423, 446, 829
BsmBI	CGTCTC	2 cut(s)	405, 446
BsnI	GGCC	2 cut(s)	5, 314
Bso31I	GGTCTC	2 cut(s)	423, 829
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	39, 650
BspACI	CCGC	4 cut(s)	43, 77, 347, 350
BspANI	GGCC	2 cut(s)	5, 314
BspCNI	CTCAG	1 cut(s)	809
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	2 cut(s)	34, 658
BspQI	GCTCTTC	1 cut(s)	102
BspTNI	GGTCTC	2 cut(s)	423, 829
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	708, 747
BssMI	GATC	2 cut(s)	39, 650
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	122, 628, 685
Bst6I	CTCTTC	5 cut(s)	102, 323, 336, 365, 401
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	6 cut(s)	291, 309, 437, 768, 796, 858
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	2 cut(s)	42, 653
BstMAI	GTCTC	4 cut(s)	405, 423, 446, 829
BstMBI	GATC	2 cut(s)	39, 650
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 175, 463, 801
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	2 cut(s)	397, 708
BstSFI	CTRYAG	2 cut(s)	420, 600
BstV1I	GCAGC	2 cut(s)	86, 478
BstV2I	GAAGAC	3 cut(s)	258, 623, 671
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	2 cut(s)	5, 314
BtgZI	GCGATG	2 cut(s)	204, 285
Cac8I	GCNNGC	1 cut(s)	852
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	755
CseI	GACGC	2 cut(s)	422, 463
Csp6I	GTAC	1 cut(s)	633
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	6 cut(s)	291, 309, 437, 768, 796, 858
DpnI	GATC	2 cut(s)	41, 652
DpnII	GATC	2 cut(s)	39, 650
DriI	GACNNNNNGTC	1 cut(s)	22
Eam1104I	CTCTTC	5 cut(s)	102, 323, 336, 365, 401
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	5 cut(s)	102, 323, 336, 365, 401
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	2 cut(s)	423, 829
Eco32I	GATATC	1 cut(s)	828
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	828
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	2 cut(s)	405, 446
FaiI	YATR	2 cut(s)	390, 462
Fnu4HI	GCNGC	6 cut(s)	75, 78, 348, 351, 467, 855
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	6 cut(s)	75, 78, 348, 351, 467, 855
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	6 cut(s)	75, 78, 348, 351, 467, 855
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	5, 314
HapII	CCGG	2 cut(s)	359, 710
HgaI	GACGC	2 cut(s)	422, 463
HhaI	GCGC	1 cut(s)	755
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HinfI	GANTC	2 cut(s)	506, 806
HpaII	CCGG	2 cut(s)	359, 710
HphI	GGTGA	2 cut(s)	109, 560
Hpy188I	TCNGA	6 cut(s)	10, 127, 405, 799, 811, 832
Hpy188III	TCNNGA	2 cut(s)	609, 688
Hpy99I	CGWCG	3 cut(s)	14, 17, 20
HpyAV	CCTTC	5 cut(s)	88, 241, 376, 581, 606
HpyCH4III	ACNGT	3 cut(s)	122, 628, 685
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 175, 463, 801
HpyF3I	CTNAG	6 cut(s)	291, 309, 437, 768, 796, 858
HspAI	GCGC	1 cut(s)	753
Kzo9I	GATC	2 cut(s)	39, 650
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	3 cut(s)	71, 305, 421
Lsp1109I	GCAGC	2 cut(s)	86, 478
LweI	GCATC	1 cut(s)	764
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	566, 679
MalI	GATC	2 cut(s)	41, 652
MboI	GATC	2 cut(s)	39, 650
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	210, 304, 591
MlyI	GAGTC	2 cut(s)	515, 815
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	8 cut(s)	16, 337, 366, 520, 523, 638, 727, 754
MseI	TTAA	2 cut(s)	243, 594
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	359, 710
MspR9I	CCNGG	2 cut(s)	399, 710
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	4 cut(s)	83, 175, 463, 801
NciI	CCSGG	1 cut(s)	710
NdeII	GATC	2 cut(s)	39, 650
NmuCI	GTSAC	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 267
PkrI	GCNGC	6 cut(s)	76, 79, 349, 352, 468, 856
PleI	GAGTC	2 cut(s)	514, 814
PpsI	GAGTC	2 cut(s)	514, 814
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	243, 594
SatI	GCNGC	6 cut(s)	75, 78, 348, 351, 467, 855
Sau3AI	GATC	2 cut(s)	39, 650
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	2 cut(s)	515, 815
ScrFI	CCNGG	2 cut(s)	399, 710
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	764
SfcI	CTRYAG	2 cut(s)	420, 600
Sse9I	AATT	3 cut(s)	210, 304, 591
SsiI	CCGC	4 cut(s)	43, 77, 347, 350
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	397, 708
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	3 cut(s)	122, 628, 685
TasI	AATT	3 cut(s)	210, 304, 591
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	3 cut(s)	80, 350, 353
Tru1I	TTAA	2 cut(s)	243, 594
Tru9I	TTAA	2 cut(s)	243, 594
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	3 cut(s)	74, 466, 854
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	210, 804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.