Rroxscaffold_7G00165200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013929
Physical Location & Seq
Reverse (-)
7051926 .. 7053825
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165200.1

Sequence Viewer

Length: 771 bp
ATGGCCTCCGACGACGACGAGAAGTCGCTGGGTTCGTTGATCCGCAACAAGAAGAAACAAAATGGGAATGGAGCAGCGGCAATAGCCAAGCCGAAGGTGAAGAAAGAAGAGCTCGATAACGGTTCTGATAGCCCAAAGCCCAAGCCCAGAAACCCAATTGTGAAAAAGCAAGAGAAGCACAACGAAAGCGATGATGAAGATGAGAAGCCAATTGGTCGCACGAAGCCCAGAAAAGCCCCAGTTAAGAAGGAAGACAAGGACGATGATAGCGATGATGATAAGCCCCTAGCTAAGAAAAGCTCCAATTCAAAGGCCGATAAGAATGTGAAGAGAAAGAGAGAAGAGGCGGCGACACCGGAGAAGAAGAAGAGGGAGAAGAAGGTGTATGATTTGCCTGGTCAGAAGAGAGACGCTCCTGAAGAGAGAGACCCACTTAGGATTTTTTACGAGACGCTTTATGAGCAGCTTCCCAATAGCGAAATGGCACAGGTCTGTTCTCCAATTAAAGCTGTAGCTTCTGGAAGGAAGACCACAACAGTCAGTACTACAAGTGGAGGTGGATCTTCTGTAAAGAAGACCACAACATCAGTTACTGTCAAGAAAAAGACAACATCAACCCCGGTTTCCTCAAATAAAAAGAAGCCAACACCCGCCTCCAAGGGCGCATCAAATCTGTCTAAGAAGCGGAAGAAAGATGATGAAAGCTCAGAGAGCGAGTCTGATGATGACTTTGTGATATCCGAGAGACCAAAGAAAAGGCAGGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.26

Weight (kDa)

9.65

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013929)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19990
fragaria_vesca FvH4_2g38430
malus_domestica MD08G1013000.v1.1
prunus_persica Prupe.1G365000_v2.0.a1
pyrus_communis pycom08g01110 pycom15g01060
rosa_chinensis RchiOBHm_Chr6g0302881
rosa_laevigata RLG00000011128 RLG00000021252
rosa_multiflora Rmu_ssc0000460.1_g000012
rosa_roxburghii Rroxscaffold_7G00165200
rosa_rugosa Rorug06G0317900
rosa_samantha Rh6AG431300 Rh6BG471300 Rh6CG443700 Rh6DG430400
rosa_wichuraiana Rw6G037370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 43, 77, 347, 651, 685
AclWI GGATC 2 cut(s) 34, 568
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 544
AgsI TTSAA 1 cut(s) 309
AhdI GACNNNNNGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 8 cut(s) 112, 290, 300, 466, 509, 515, 705, 767
AluI AGCT 8 cut(s) 112, 290, 300, 466, 509, 515, 705, 767
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 4 cut(s) 402, 420, 443, 739
AlwI GGATC 2 cut(s) 34, 568
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 2 cut(s) 3, 312
ApeKI GCWGC 3 cut(s) 74, 463, 764
AspLEI GCGC 1 cut(s) 665
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 1 cut(s) 109
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 3 cut(s) 258, 533, 581
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 86, 475
BciT130I CCWGG 1 cut(s) 396
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 4 cut(s) 402, 420, 443, 739
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 510
BisI GCNGC 5 cut(s) 75, 78, 348, 464, 765
BlsI GCNGC 5 cut(s) 76, 79, 349, 465, 766
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 2 cut(s) 396, 620
BmeRI GACNNNNNGTC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 396, 620
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 3 cut(s) 258, 533, 581
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpuMI CCSGG 1 cut(s) 620
BsaI GGTCTC 2 cut(s) 420, 739
BsaJI CCNNGG 2 cut(s) 618, 657
BsaWI WCCGGW 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 618, 657
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 86, 475
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 5, 314
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 2 cut(s) 356, 620
BsmAI GTCTC 4 cut(s) 402, 420, 443, 739
BsmBI CGTCTC 2 cut(s) 402, 443
BsnI GGCC 2 cut(s) 5, 314
Bso31I GGTCTC 2 cut(s) 420, 739
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 39, 560
BspACI CCGC 5 cut(s) 43, 77, 347, 651, 685
BspANI GGCC 2 cut(s) 5, 314
BspCNI CTCAG 1 cut(s) 719
BspPI GGATC 2 cut(s) 34, 568
BspQI GCTCTTC 1 cut(s) 102
BspTNI GGTCTC 2 cut(s) 420, 739
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 618, 657
BssMI GATC 2 cut(s) 39, 560
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 122, 538, 595
Bst6I CTCTTC 6 cut(s) 102, 323, 336, 362, 398, 414
BstC8I GCNNGC 1 cut(s) 762
BstDEI CTNAG 5 cut(s) 291, 434, 678, 706, 768
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 2 cut(s) 42, 563
BstMAI GTCTC 4 cut(s) 402, 420, 443, 739
BstMBI GATC 2 cut(s) 39, 560
BstMWI GCNNNNNNNGC 4 cut(s) 83, 175, 460, 711
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 394, 618
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 86, 475
BstV2I GAAGAC 3 cut(s) 258, 533, 581
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 2 cut(s) 5, 314
BtgZI GCGATG 2 cut(s) 204, 285
Cac8I GCNNGC 1 cut(s) 762
CaiI CAGNNNCTG 1 cut(s) 593
CfoI GCGC 1 cut(s) 665
CseI GACGC 2 cut(s) 419, 460
Csp6I GTAC 1 cut(s) 543
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 5 cut(s) 291, 434, 678, 706, 768
DpnI GATC 2 cut(s) 41, 562
DpnII GATC 2 cut(s) 39, 560
DriI GACNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 6 cut(s) 102, 323, 336, 362, 398, 414
Eam1105I GACNNNNNGTC 1 cut(s) 22
EarI CTCTTC 6 cut(s) 102, 323, 336, 362, 398, 414
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 2 cut(s) 420, 739
Eco32I GATATC 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 394
EcoRV GATATC 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 657
Esp3I CGTCTC 2 cut(s) 402, 443
FaiI YATR 2 cut(s) 387, 459
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 75, 78, 348, 464, 765
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 5 cut(s) 75, 78, 348, 464, 765
FspBI CTAG 1 cut(s) 287
GlaI GCGC 1 cut(s) 664
GluI GCNGC 5 cut(s) 75, 78, 348, 464, 765
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 5, 314
HapII CCGG 2 cut(s) 356, 620
HgaI GACGC 2 cut(s) 419, 460
HhaI GCGC 1 cut(s) 665
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 1 cut(s) 716
HpaII CCGG 2 cut(s) 356, 620
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 6 cut(s) 10, 127, 402, 709, 721, 742
Hpy188III TCNNGA 3 cut(s) 416, 519, 598
Hpy99I CGWCG 3 cut(s) 14, 17, 20
HpyAV CCTTC 4 cut(s) 88, 241, 373, 516
HpyCH4III ACNGT 3 cut(s) 122, 538, 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 175, 460, 711
HpyF3I CTNAG 5 cut(s) 291, 434, 678, 706, 768
HspAI GCGC 1 cut(s) 663
Kzo9I GATC 2 cut(s) 39, 560
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 71, 305, 418
Lsp1109I GCAGC 2 cut(s) 86, 475
LweI GCATC 1 cut(s) 674
MaeI CTAG 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 589
MalI GATC 2 cut(s) 41, 562
MboI GATC 2 cut(s) 39, 560
MfeI CAATTG 2 cut(s) 156, 210
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 156, 210, 304, 501
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 6 cut(s) 16, 337, 363, 548, 637, 664
MseI TTAA 2 cut(s) 243, 504
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 356, 620
MspR9I CCNGG 2 cut(s) 396, 620
MunI CAATTG 2 cut(s) 156, 210
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 83, 175, 460, 711
NciI CCSGG 1 cut(s) 620
NdeII GATC 2 cut(s) 39, 560
PciSI GCTCTTC 1 cut(s) 102
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 267
PkrI GCNGC 5 cut(s) 76, 79, 349, 465, 766
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SacI GAGCTC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 243, 504
SatI GCNGC 5 cut(s) 75, 78, 348, 464, 765
Sau3AI GATC 2 cut(s) 39, 560
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 396, 620
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 510
Sse9I AATT 4 cut(s) 156, 210, 304, 501
SsiI CCGC 5 cut(s) 43, 77, 347, 651, 685
SspMI CTAG 1 cut(s) 287
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 394, 618
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 122, 538, 595
TaqI TCGA 1 cut(s) 114
TasI AATT 4 cut(s) 156, 210, 304, 501
TatI WGTACW 1 cut(s) 542
TauI GCSGC 2 cut(s) 80, 350
Tru1I TTAA 2 cut(s) 243, 504
Tru9I TTAA 2 cut(s) 243, 504
TseI GCWGC 3 cut(s) 74, 463, 764
TspDTI ATGAA 2 cut(s) 210, 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 1 cut(s) 287
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.