Rorug06G0317900

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005418
Physical Location & Seq
Forward (+)
46992301 .. 46994883
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0317900.1

Sequence Viewer

Length: 1083 bp
ATGAATGTTGCTGTCCAAGCTTCCAAAAACATGAAGCTGCAAGTAGGCAATTCAGTGGAGGTGTTGAGAAAAGAAAATGATCTGTGTATGTCCTGGTTTTCAGGTAAAGTAATGGCAGTTGATGGCGATGACTTCATTGTGAGGTATATGTCACTTATAGACCGCAAAGAGGTGATGGCGGTGGAGAGGGTGTACAGAAAGGCCATTAGGCCTCGGCCTCCACATGCAAAGAAAGAGAAGGGATGGATTGTTGGTGATATGGTTGAAGTGTTTGATACGAAGTGTTGGAAGGTTGGGAAGGTAGCCAAGGTAGGGAAGAACAATCGAGTTGTCATTAGATTTCTCGGGTCCATTCAGCTTAAGGAATTTGATGAATGTAACCTGAGGATCAGGCAAGCTTGGGATCAGAATAAGTGGTCAGTGATTGAGAAGGTTCAAAAGAAAAATCAGGTTAAGATTCGGAGCCATAGATGGGATCATTCAAAAGTTCAACTAGAGGCAAGTTGTGCAGAACCTTTATCAAAAGAGAAGAGAATTAGCTGCAAGAGAAGAAGATCAAACATTAATGTGGGAGCATGTGACAGGCCATCAATGAGTAACCATTGGCTGTACATGCAGGTAGATAAAACATCAAGGAACAACTCTAGTACTGATATAGATCCCAAAATGAGAAAGGCAACCAGCTATGGGATGCATAGATCTTTTGAGTCTGCTCAGTGCACTGAGGATAGTTACCAGTGTTCTGTGGCTAGTTGTAGTATGAATGAGCTTTCCGGCTCTCAAAATGGGAGTTCTGCAGAACTTGGAGAAGATATTTGTGATAGTTCTGACGCAGAGTCATCATTTCCATCTTCGGCTGGGAAAAAACTCTCAGCTCCATTACCAGAGCCTTATGTGCTCGATGTTGACATCCACAAATTAGAGCTTCACGCATACAAGTCGACTTTGCAGGTGCTCTATGCTTCAGGTCCCTTGAGTTGGGAGCAGGAATCCCTCCTAACGAATCTTCGTCTGTCCCTTCATATAACAAATGAGGAACATTTGCTGCATTTGAGGCACCTCTTATCTTCTCAGGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

40.98

Weight (kDa)

9.03

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 16 - 74 1.8e-11 Agenet domain
ENT PF03735 303 - 349 3.3e-12 ENT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 940
Acc36I ACCTGC 2 cut(s) 607, 940
AccB1I GGYRCC 1 cut(s) 1056
AccI GTMKAC 1 cut(s) 941
AciI CCGC 2 cut(s) 163, 179
AclWI GGATC 4 cut(s) 395, 411, 483, 653
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 948
AfaI GTAC 3 cut(s) 194, 611, 649
AfiI CCNNNNNNNGG 5 cut(s) 169, 312, 472, 687, 978
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 4 cut(s) 266, 437, 483, 491
AhdI GACNNNNNGTC 1 cut(s) 835
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 9 cut(s) 20, 37, 358, 398, 540, 684, 769, 875, 925
AluI AGCT 9 cut(s) 20, 37, 358, 398, 540, 684, 769, 875, 925
Alw21I GWGCWC 3 cut(s) 722, 900, 957
Alw44I GTGCAC 1 cut(s) 718
AlwI GGATC 4 cut(s) 395, 411, 483, 653
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 4 cut(s) 201, 209, 215, 584
ApaLI GTGCAC 1 cut(s) 718
ApeKI GCWGC 3 cut(s) 37, 540, 1045
ApoI RAATTY 1 cut(s) 365
AseI ATTAAT 1 cut(s) 564
AspS9I GGNCC 2 cut(s) 348, 968
AsuHPI GGTGA 2 cut(s) 184, 266
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 2 cut(s) 348, 968
AxyI CCTNAGG 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 722
BanI GGYRCC 1 cut(s) 1056
Bbv12I GWGCWC 3 cut(s) 722, 900, 957
BbvI GCAGC 3 cut(s) 24, 527, 1032
BccI CCATC 6 cut(s) 116, 169, 237, 465, 595, 856
BcgI CGANNNNNNTGC 2 cut(s) 921, 955
BciT130I CCWGG 1 cut(s) 94
BfaI CTAG 3 cut(s) 494, 645, 750
BfmI CTRYAG 1 cut(s) 795
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 2 cut(s) 607, 940
BglII AGATCT 1 cut(s) 698
BisI GCNGC 3 cut(s) 38, 541, 1046
BlsI GCNGC 3 cut(s) 39, 542, 1047
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 2 cut(s) 348, 968
BmeRI GACNNNNNGTC 1 cut(s) 835
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 348, 968
BmiI GGNNCC 4 cut(s) 349, 464, 970, 1058
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 994
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 2 cut(s) 212, 306
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 312, 472, 687, 978
Bse1I ACTGG 1 cut(s) 736
Bse21I CCTNAGG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 212, 306
BseGI GGATG 3 cut(s) 248, 696, 909
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 5 cut(s) 169, 312, 472, 687, 978
BseMII CTCAG 4 cut(s) 374, 714, 728, 885
BseNI ACTGG 1 cut(s) 736
BseSI GKGCMC 1 cut(s) 722
BseXI GCAGC 3 cut(s) 24, 527, 1032
BseYI CCCAGC 1 cut(s) 857
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 4 cut(s) 203, 211, 217, 586
BshNI GGYRCC 1 cut(s) 1056
BsiHKAI GWGCWC 3 cut(s) 722, 900, 957
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 774
BslFI GGGAC 2 cut(s) 954, 1000
BslI CCNNNNNNNGG 5 cut(s) 169, 312, 472, 687, 978
BsmFI GGGAC 2 cut(s) 954, 1000
BsnI GGCC 4 cut(s) 203, 211, 217, 586
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 722, 900, 957
Bsp1407I TGTACA 2 cut(s) 192, 609
Bsp143I GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
BspACI CCGC 2 cut(s) 163, 179
BspANI GGCC 4 cut(s) 203, 211, 217, 586
BspCNI CTCAG 4 cut(s) 375, 715, 727, 884
BspLI GGNNCC 4 cut(s) 349, 464, 970, 1058
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 2 cut(s) 607, 940
BspPI GGATC 4 cut(s) 395, 411, 483, 653
BspT107I GGYRCC 1 cut(s) 1056
BspTI CTTAAG 1 cut(s) 359
BsrGI TGTACA 2 cut(s) 192, 609
BsrI ACTGG 1 cut(s) 736
BssECI CCNNGG 2 cut(s) 212, 306
BssMI GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 524
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 2 cut(s) 192, 609
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 5 cut(s) 383, 714, 723, 871, 1071
BstF5I GGATG 3 cut(s) 248, 696, 909
BstKTI GATC 7 cut(s) 82, 390, 406, 478, 557, 661, 701
BstMBI GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
BstMWI GCNNNNNNNGC 5 cut(s) 17, 506, 613, 895, 1054
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 3 cut(s) 227, 579, 616
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 1 cut(s) 722
BstV1I GCAGC 3 cut(s) 24, 527, 1032
BstX2I RGATCY 2 cut(s) 658, 698
BstYI RGATCY 2 cut(s) 658, 698
Bsu36I CCTNAGG 1 cut(s) 383
BsuRI GGCC 4 cut(s) 203, 211, 217, 586
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 248, 696, 909
BtsIMutI CAGTG 5 cut(s) 60, 426, 720, 722, 743
BveI ACCTGC 2 cut(s) 607, 940
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 348, 968
CseI GACGC 1 cut(s) 839
Csp6I GTAC 3 cut(s) 193, 610, 648
CviAII CATG 4 cut(s) 31, 224, 576, 613
CviQI GTAC 3 cut(s) 193, 610, 648
DdeI CTNAG 5 cut(s) 383, 714, 723, 871, 1071
DpnI GATC 7 cut(s) 81, 389, 405, 477, 556, 660, 700
DpnII GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
DriI GACNNNNNGTC 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 524
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 348, 968
Eco57I CTGAAG 1 cut(s) 948
Eco81I CCTNAGG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 968
EcoRII CCWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 34, 227, 579, 616
FaqI GGGAC 2 cut(s) 954, 1000
FatI CATG 4 cut(s) 30, 223, 575, 612
FblI GTMKAC 1 cut(s) 941
Fnu4HI GCNGC 3 cut(s) 38, 541, 1046
FokI GGATG 3 cut(s) 255, 703, 896
Fsp4HI GCNGC 3 cut(s) 38, 541, 1046
FspBI CTAG 3 cut(s) 494, 645, 750
GluI GCNGC 3 cut(s) 38, 541, 1046
GsaI CCCAGC 1 cut(s) 861
HaeIII GGCC 4 cut(s) 203, 211, 217, 586
HapII CCGG 1 cut(s) 774
HgaI GACGC 1 cut(s) 839
Hin1II CATG 4 cut(s) 34, 227, 579, 616
HincII GTYRAC 2 cut(s) 907, 942
HindII GTYRAC 2 cut(s) 907, 942
HindIII AAGCTT 2 cut(s) 18, 396
HinfI GANTC 5 cut(s) 457, 707, 836, 989, 1003
HpaII CCGG 1 cut(s) 774
HphI GGTGA 2 cut(s) 184, 266
Hpy166II GTNNAC 4 cut(s) 193, 720, 907, 942
Hpy188I TCNGA 3 cut(s) 408, 462, 829
Hpy8I GTNNAC 4 cut(s) 193, 720, 907, 942
HpyAV CCTTC 5 cut(s) 232, 283, 292, 424, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 506, 613, 895, 1054
HpyF3I CTNAG 5 cut(s) 383, 714, 723, 871, 1071
Hsp92II CATG 4 cut(s) 34, 227, 579, 616
Kzo9I GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
LmnI GCTCC 4 cut(s) 462, 572, 880, 982
Lsp1109I GCAGC 3 cut(s) 24, 527, 1032
LweI GCATC 1 cut(s) 681
MaeI CTAG 3 cut(s) 494, 645, 750
MaeIII GTNAC 5 cut(s) 150, 377, 578, 596, 731
MalI GATC 7 cut(s) 81, 389, 405, 477, 556, 660, 700
MboI GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
MboII GAAGA 8 cut(s) 328, 541, 561, 564, 821, 843, 998, 1059
MflI RGATCY 2 cut(s) 658, 698
MhlI GDGCHC 3 cut(s) 722, 900, 957
MluCI AATT 4 cut(s) 49, 365, 534, 917
MlyI GAGTC 2 cut(s) 716, 845
MmeI TCCRAC 1 cut(s) 266
Mph1103I ATGCAT 1 cut(s) 696
MseI TTAA 3 cut(s) 360, 453, 564
MslI CAYNNNNRTG 1 cut(s) 566
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 5 cut(s) 17, 506, 613, 895, 1054
NdeII GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
NlaIII CATG 4 cut(s) 34, 227, 579, 616
NlaIV GGNNCC 4 cut(s) 349, 464, 970, 1058
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 150, 578
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 3 cut(s) 227, 579, 616
PaqCI CACCTGC 1 cut(s) 940
PceI AGGCCT 1 cut(s) 211
PfeI GAWTC 3 cut(s) 457, 989, 1003
PkrI GCNGC 3 cut(s) 39, 542, 1047
PleI GAGTC 2 cut(s) 715, 844
PpsI GAGTC 2 cut(s) 715, 844
PpuMI RGGWCCY 1 cut(s) 968
PshBI ATTAAT 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 968
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 4 cut(s) 349, 464, 970, 1058
PspPI GGNCC 2 cut(s) 348, 968
PspPPI RGGWCCY 1 cut(s) 968
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 2 cut(s) 658, 698
RsaI GTAC 3 cut(s) 194, 611, 649
RsaNI GTAC 3 cut(s) 193, 610, 648
RseI CAYNNNNRTG 1 cut(s) 566
SalI GTCGAC 1 cut(s) 940
SaqAI TTAA 3 cut(s) 360, 453, 564
SatI GCNGC 3 cut(s) 38, 541, 1046
Sau3AI GATC 7 cut(s) 79, 387, 403, 475, 554, 658, 698
Sau96I GGNCC 2 cut(s) 348, 968
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 2 cut(s) 716, 845
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 3 cut(s) 722, 900, 957
SfaNI GCATC 1 cut(s) 681
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 2 cut(s) 348, 968
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 359, 973
SmoI CTYRAG 2 cut(s) 359, 973
Sse9I AATT 4 cut(s) 49, 365, 534, 917
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 2 cut(s) 163, 179
SspMI CTAG 3 cut(s) 494, 645, 750
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 306
TaqI TCGA 3 cut(s) 325, 900, 941
TasI AATT 4 cut(s) 49, 365, 534, 917
TatI WGTACW 3 cut(s) 192, 609, 647
TfiI GAWTC 3 cut(s) 457, 989, 1003
Tru1I TTAA 3 cut(s) 360, 453, 564
Tru9I TTAA 3 cut(s) 360, 453, 564
TscAI CASTG 5 cut(s) 60, 426, 722, 727, 743
TseFI GTSAC 2 cut(s) 150, 578
TseI GCWGC 3 cut(s) 37, 540, 1045
Tsp45I GTSAC 2 cut(s) 150, 578
TspDTI ATGAA 6 cut(s) 17, 47, 124, 387, 776, 1010
TspRI CASTG 5 cut(s) 60, 426, 722, 727, 743
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 718
VpaK11BI GGWCC 2 cut(s) 348, 968
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 1 cut(s) 365
XceI RCATGY 3 cut(s) 227, 579, 616
XmiI GTMKAC 1 cut(s) 941
XspI CTAG 3 cut(s) 494, 645, 750
ZrmI AGTACT 1 cut(s) 649
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.