Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005418

Physical Location & Seq

Genomic Coordinates Reverse (-)

19548399 .. 19548824

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1118100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGTGGTTCTACCCTAAGAGGAGGCGCCCACAGCTGAAGCAAAGTTGGACTGGCCAAACCCTAACCTCAATCTCTGCACCTCCCCCACATTTACTCACCATCTTTGCCATTGTCATTGCTTTGTTATGGCTCTCTCAGTACACTGACTACAAGTCCCAAATGCAACACACAGCCATCAACTTCCAGATCTTCCTAATATCGTTGCCTATTTTGTTGGTATTTTTGGTAGCTTCGTATTCTTCGATTTCTTCTAGTGGATGGTTCAACTTCGGGGTCCGGCGTCGGGAGCACGAGTCGGTTCACCGAGTTGGCGGCGGTTCAAGCTCGCCGTGGGGTGTTGCTGTCTTGTTGGTGCTGCTTCTGGTGTTGGTATCTTACCAATCGTCGTTTCATTCCAAGTGGTTTGGTGGGAGGTCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.06

Weight (kDa)

10.27

Isoelectric Point (pI)

63.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42146
fragaria_vesca	FvH4_5g34311
malus_domestica	MD05G1115600.v1.1 MD08G1013100.v1.1 MD10G1118100.v1.1
prunus_persica	Prupe.1G365100_v2.0.a1 Prupe.8G160400_v2.0.a1
pyrus_communis	pycom08g01120
rosa_chinensis	RchiOBHm_Chr6g0245271 RchiOBHm_Chr6g0302871
rosa_laevigata	RLG00000011129
rosa_multiflora	Rmu_sc0001288.1_g000011 Rmu_sc0005398.1_g000002 Rmu_sc0006393.1_g000001 Rmu_ssc0000460.1_g000011
rosa_roxburghii	Rroxscaffold_7G00165220 Rroxscaffold_7G00215310
rosa_rugosa	Rorug05G0513200.1 Rorug06G0317900
rosa_samantha	Rh6AG028500 Rh6AG431200 Rh6BG024700 Rh6BG471400 Rh6CG022800 Rh6CG443600 Rh6DG022800 Rh6DG430300
rosa_wichuraiana	Rw6G002400 Rw6G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	27
AciI	CCGC	2 cut(s)	315, 318
AcoI	YGGCCR	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	28, 283
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	268, 324
AhdI	GACNNNNNGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	3 cut(s)	37, 233, 327
AluI	AGCT	3 cut(s)	37, 233, 327
Alw21I	GWGCWC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	358
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	91, 296
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	3 cut(s)	110, 185, 255
BceAI	ACGGC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	31
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	2 cut(s)	316, 359
BlsI	GCNGC	2 cut(s)	317, 360
Bme18I	GGWCC	1 cut(s)	277
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	29, 278
BsaHI	GRCGYC	2 cut(s)	28, 283
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	315, 318
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	29, 278
BspT107I	GGYRCC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	2 cut(s)	28, 283
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
BstACI	GRCGYC	2 cut(s)	28, 283
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	18, 138
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	266
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 289, 324
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	6 cut(s)	37, 57, 133, 176, 233, 327
CviKI_1	RGCY	6 cut(s)	37, 57, 133, 176, 233, 327
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	18, 138
DinI	GGCGCC	1 cut(s)	29
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	59
EgeI	GGCGCC	1 cut(s)	29
EheI	GGCGCC	1 cut(s)	29
FaiI	YATR	1 cut(s)	130
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	316, 359
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	316, 359
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	316, 359
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	2 cut(s)	28, 283
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	2 cut(s)	91, 296
Hpy166II	GTNNAC	2 cut(s)	144, 304
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	187, 287
Hpy8I	GTNNAC	2 cut(s)	144, 304
Hpy99I	CGWCG	2 cut(s)	288, 391
HpyCH4V	TGCA	2 cut(s)	80, 166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 289, 324
HpyF3I	CTNAG	2 cut(s)	18, 138
Hsp92I	GRCGYC	2 cut(s)	28, 283
HspAI	GCGC	1 cut(s)	28
KasI	GGCGCC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	4 cut(s)	39, 200, 293, 350
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	3 cut(s)	184, 234, 243
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	29, 399
MnlI	CCTC	5 cut(s)	15, 18, 79, 93, 408
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	34, 289, 324
NarI	GGCGCC	1 cut(s)	28
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	29, 278
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	317, 360
PleI	GAGTC	1 cut(s)	304
PluTI	GGCGCC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	29, 278
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	189
PvuII	CAGCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	2 cut(s)	316, 359
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	6 cut(s)	39, 71, 85, 235, 329, 419
SfoI	GGCGCC	1 cut(s)	29
SinI	GGWCC	1 cut(s)	277
SsiI	CCGC	2 cut(s)	315, 318
SspDI	GGCGCC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	255
TaqI	TCGA	1 cut(s)	245
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	318
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	277
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.