Rw6G002400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0005418
Physical Location & Seq
Forward (+)
3945396 .. 3946031
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002400.1

Sequence Viewer

Length: 426 bp
ATGGAGTGGTTCTACCCTAAAAGAAGGGGTCCAGAATGGAAGCAAGGGTGGACTGGCCAGACCCTCACCTCCATTTCTGCACCACCTTTACATTTACTCACCATCTTTGCCATTGTAATTTTATTGCTATGGCTTTCTCAATACACCGAGTACAAATCCCAAATGCAACAGACCGCCGTTAACTTCCAGATATTGTTAATGTTGCTGCCTGTTTTCTTAATATTTTTGGTAGCATCATGTTCTTCGATTTCCTCCGGTGGATGGTTCAACTTCCGGGGCCGGCACCCACAGCACGAGTTGGTCAACCAAGCCGGTGGTGGCACGCCGTGGGGTGTTGCCATATTGGTAGCGCTGGTTTTGGTCTTGCTATCATACCAATCATCTTTTCATTCGAAGTGGTTTGGACCTCTTGGGAGATTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.98

Weight (kDa)

9.58

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AciI CCGC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 55
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 261
AgsI TTSAA 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 2 cut(s) 55, 277
ApeKI GCWGC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 29, 277, 404
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 58, 91
AsuII TTCGAA 1 cut(s) 392
AvaII GGWCC 2 cut(s) 29, 404
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 282
BauI CACGAG 1 cut(s) 293
BbvI GCAGC 1 cut(s) 192
BccI CCATC 2 cut(s) 110, 255
BceAI ACGGC 2 cut(s) 161, 310
BcnI CCSGG 1 cut(s) 275
BfoI RGCGCY 1 cut(s) 353
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 2 cut(s) 29, 404
BmgT120I GGNCC 3 cut(s) 29, 277, 404
BmiI GGNNCC 3 cut(s) 30, 278, 284
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 274, 326
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 2 cut(s) 279, 311
Bse1I ACTGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 274, 326
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 57, 279
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 4 cut(s) 255, 274, 280, 312
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 2 cut(s) 57, 279
Bsp119I TTCGAA 1 cut(s) 392
BspACI CCGC 1 cut(s) 174
BspANI GGCC 2 cut(s) 57, 279
BspLI GGNNCC 3 cut(s) 30, 278, 284
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 282
BsrFI RCCGGY 2 cut(s) 279, 311
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 2 cut(s) 279, 311
BssECI CCNNGG 2 cut(s) 274, 326
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 281, 323
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 1 cut(s) 266
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 314
BsuRI GGCC 2 cut(s) 57, 279
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 281, 323
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 2 cut(s) 279, 311
Cfr13I GGNCC 3 cut(s) 29, 277, 404
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 237
CviJI RGCY 4 cut(s) 57, 133, 279, 311
CviKI_1 RGCY 4 cut(s) 57, 133, 279, 311
CviQI GTAC 1 cut(s) 151
DraIII CACNNNGTG 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 29, 404
Eco47III AGCGCT 1 cut(s) 351
FaeI CATG 1 cut(s) 240
FaiI YATR 4 cut(s) 130, 238, 341, 373
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 206
GlaI GCGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 2 cut(s) 57, 279
HapII CCGG 4 cut(s) 255, 274, 280, 312
HhaI GCGC 1 cut(s) 352
Hin1II CATG 1 cut(s) 240
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HincII GTYRAC 2 cut(s) 181, 304
HindII GTYRAC 2 cut(s) 181, 304
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 4 cut(s) 255, 274, 280, 312
HphI GGTGA 2 cut(s) 58, 91
Hpy166II GTNNAC 3 cut(s) 51, 181, 304
Hpy188III TCNNGA 2 cut(s) 32, 187
Hpy8I GTNNAC 3 cut(s) 51, 181, 304
HpyAV CCTTC 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 80, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
Hsp92II CATG 1 cut(s) 240
HspAI GCGC 1 cut(s) 350
KroI GCCGGC 1 cut(s) 279
KroNI GCCGGC 1 cut(s) 281
KspAI GTTAAC 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 57
MnlI CCTC 4 cut(s) 74, 79, 262, 417
Mox20I TGGCCA 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 57
MseI TTAA 3 cut(s) 180, 197, 218
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 4 cut(s) 255, 274, 280, 312
MspR9I CCNGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 289
NaeI GCCGGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 275
NgoMIV GCCGGC 1 cut(s) 279
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 3 cut(s) 30, 278, 284
NspV TTCGAA 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 30, 278, 284
PspPI GGNCC 3 cut(s) 29, 277, 404
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 180, 197, 218
SatI GCNGC 1 cut(s) 206
Sau96I GGNCC 3 cut(s) 29, 277, 404
ScrFI CCNGG 1 cut(s) 275
SetI ASST 3 cut(s) 71, 88, 409
SfaNI GCATC 1 cut(s) 242
SfuI TTCGAA 1 cut(s) 392
SinI GGWCC 2 cut(s) 29, 404
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 174
SspI AATATT 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 273
TaqI TCGA 2 cut(s) 245, 392
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 150
Tru1I TTAA 3 cut(s) 180, 197, 218
Tru9I TTAA 3 cut(s) 180, 197, 218
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 29, 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.