pycom08g01120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0005418
Physical Location & Seq
Forward (+)
863953 .. 864360
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g01120.1

Sequence Viewer

Length: 408 bp
ATGGGTTGGTTTTTGAGTGAGAGAAAAGGAAGGAAGGGATGGATGGAGGAGACCCTAGCCTCCGTCTCCGCGCCGCCATCGTCTCTAGTGATGCTAGTCGGCATAGTGGTTGCGTTACTAATATTTTCATCTTACACCAGCTACAAGGCGCAGATGGAGAGAACTAAGTTCGGGTTCAATATATTTGTCTTGTTTCTGCCTTTGTTGTTGACCATTGTCGCTTACTGTTTGATCACATACCAGAACTTTCGGGTGAGGACGAAGGCGGCGGTGGCTGATAAGGCAGCTGAAGGTGGAGGAGCATCCCCCTGGGGCGTGGCCTTGTTTCTGGGGCTGTTGCTCGTTTTGGTGTCCTATCAGTCTTCTGTGCAGTCCAAGTGGTGGCCTCACTATTGGGGTTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

9.63

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 381
AccII CGCG 1 cut(s) 71
AciI CCGC 4 cut(s) 69, 74, 266, 269
AcuI CTGAAG 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 2 cut(s) 141, 287
AluI AGCT 2 cut(s) 141, 287
Alw26I GTCTC 3 cut(s) 44, 70, 87
AoxI GGCC 2 cut(s) 318, 383
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 73, 151
AsuHPI GGTGA 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 296
BccI CCATC 4 cut(s) 33, 37, 85, 148
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 44, 70, 87
BfaI CTAG 3 cut(s) 56, 86, 95
BisI GCNGC 3 cut(s) 74, 267, 285
BlsI GCNGC 3 cut(s) 75, 268, 286
Bme1390I CCNGG 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 81, 311
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 308, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 308, 309
BseGI GGATG 3 cut(s) 44, 48, 302
BseLI CCNNNNNNNGG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 62, 312
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 320, 385
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 3 cut(s) 44, 70, 87
BsmBI CGTCTC 2 cut(s) 70, 87
BsnI GGCC 2 cut(s) 320, 385
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 4 cut(s) 69, 74, 266, 269
BspANI GGCC 2 cut(s) 320, 385
BspFNI CGCG 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 308, 309
BssMI GATC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 44, 48, 302
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 2 cut(s) 73, 151
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 3 cut(s) 44, 70, 87
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 272, 281
BstNI CCWGG 1 cut(s) 310
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 2 cut(s) 320, 385
BtsCI GGATG 3 cut(s) 44, 48, 302
CfoI GCGC 2 cut(s) 73, 151
CviJI RGCY 7 cut(s) 59, 141, 275, 287, 320, 334, 385
CviKI_1 RGCY 7 cut(s) 59, 141, 275, 287, 320, 334, 385
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 308
Esp3I CGTCTC 2 cut(s) 70, 87
FaiI YATR 3 cut(s) 104, 182, 238
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 74, 267, 285
FokI GGATG 3 cut(s) 51, 55, 289
Fsp4HI GCNGC 3 cut(s) 74, 267, 285
FspBI CTAG 3 cut(s) 56, 86, 95
GlaI GCGC 2 cut(s) 72, 150
GluI GCNGC 3 cut(s) 74, 267, 285
HaeIII GGCC 2 cut(s) 320, 385
HhaI GCGC 2 cut(s) 73, 151
Hin6I GCGC 2 cut(s) 71, 149
HinP1I GCGC 2 cut(s) 71, 149
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 4 cut(s) 24, 28, 256, 284
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 281
HpyF3I CTNAG 1 cut(s) 165
HspAI GCGC 2 cut(s) 71, 149
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 5 cut(s) 151, 254, 295, 314, 322
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 81, 311
MaeI CTAG 3 cut(s) 56, 86, 95
MaeIII GTNAC 1 cut(s) 114
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 1 cut(s) 354
MnlI CCTC 5 cut(s) 40, 70, 249, 290, 396
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 272, 281
NdeII GATC 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 309
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 3 cut(s) 75, 268, 286
PshAI GACNNNNGTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 287
SatI GCNGC 3 cut(s) 74, 267, 285
Sau3AI GATC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 310
SetI ASST 3 cut(s) 143, 289, 295
SfaNI GCATC 2 cut(s) 81, 311
SsiI CCGC 4 cut(s) 69, 74, 266, 269
SspI AATATT 1 cut(s) 123
SspMI CTAG 3 cut(s) 56, 86, 95
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 227
TauI GCSGC 2 cut(s) 76, 269
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 381
XspI CTAG 3 cut(s) 56, 86, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.