Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005398.1

Orthogroup ID

OG0005418

Physical Location & Seq

Genomic Coordinates Forward (+)

6241 .. 7164

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005398.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggagtggttctaccctaaaagaaggggtccagaatggaagcaagggtggactggccagaccctcacctccatttctgcaccacctttacatttactcaccatctttgccattgtaattttattgctatggctttctcaatacaccgagtacaaatcccaaatgcaacagaccgccgttaacttccagatattgttaatgttgctgcctgttttcttaatatttttggtagcatcatgttcttcgattccctccggtggatggttcaacttccggcgccggcacccacagcacgagttggtcaaccaagccggtggtggcacgccgtggggtgttgccatattggtagcgctggttttggtcttgctatcataccaatcatcttttcattcgaagtggggtccagaatggaagcaagggtggactggccagaccctcacctccatttctgcaccacctttacatttactcaccatctttgccattgtaattttattgctatggctttctcaatacactgagtacaaatcccaaatgcaacagaccgccgttaacttccagatattgttaatgttgctgcctgttttcttaatatttttggtagcatcatgttcttcgatttcctccggtggatggttcaacttccggggccggcacccacagcacgagttggtcaaccaagccggtggtggcacgccgtggggtgttgccatattggtagcgctggttttggtcttgctatcataccaatcatcttttcattcgaagtggtttggacctcttgggagattagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

29.9

Weight (kDa)

9.65

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42146
fragaria_vesca	FvH4_5g34311
malus_domestica	MD05G1115600.v1.1 MD08G1013100.v1.1 MD10G1118100.v1.1
prunus_persica	Prupe.1G365100_v2.0.a1 Prupe.8G160400_v2.0.a1
pyrus_communis	pycom08g01120
rosa_chinensis	RchiOBHm_Chr6g0245271 RchiOBHm_Chr6g0302871
rosa_laevigata	RLG00000011129
rosa_multiflora	Rmu_sc0001288.1_g000011 Rmu_sc0005398.1_g000002 Rmu_sc0006393.1_g000001 Rmu_ssc0000460.1_g000011
rosa_roxburghii	Rroxscaffold_7G00165220 Rroxscaffold_7G00215310
rosa_rugosa	Rorug05G0513200.1 Rorug06G0317900
rosa_samantha	Rh6AG028500 Rh6AG431200 Rh6BG024700 Rh6BG471400 Rh6CG022800 Rh6CG443600 Rh6DG022800 Rh6DG430300
rosa_wichuraiana	Rw6G002400 Rw6G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	276, 282, 654
AciI	CCGC	2 cut(s)	174, 546
AcoI	YGGCCR	2 cut(s)	55, 427
AcyI	GRCGYC	1 cut(s)	277
AdeI	CACNNNGTG	2 cut(s)	327, 699
AfaI	GTAC	2 cut(s)	152, 524
AfeI	AGCGCT	2 cut(s)	351, 723
AfiI	CCNNNNNNNGG	3 cut(s)	257, 261, 633
AgsI	TTSAA	2 cut(s)	268, 640
AjuI	GAANNNNNNNTTGG	4 cut(s)	369, 401, 741, 773
Aor51HI	AGCGCT	2 cut(s)	351, 723
AoxI	GGCC	3 cut(s)	55, 427, 649
ApeKI	GCWGC	2 cut(s)	205, 577
AspLEI	GCGC	3 cut(s)	279, 352, 724
AspS9I	GGNCC	4 cut(s)	29, 401, 649, 776
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	4 cut(s)	58, 91, 430, 463
AsuII	TTCGAA	2 cut(s)	392, 764
AvaII	GGWCC	3 cut(s)	29, 401, 776
BalI	TGGCCA	2 cut(s)	57, 429
BanI	GGYRCC	3 cut(s)	276, 282, 654
BauI	CACGAG	2 cut(s)	293, 665
BbvI	GCAGC	2 cut(s)	192, 564
BccI	CCATC	4 cut(s)	110, 255, 482, 627
BceAI	ACGGC	4 cut(s)	161, 310, 533, 682
BcnI	CCSGG	1 cut(s)	647
BfoI	RGCGCY	3 cut(s)	280, 353, 725
BisI	GCNGC	2 cut(s)	206, 578
BlsI	GCNGC	2 cut(s)	207, 579
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	3 cut(s)	29, 401, 776
BmgT120I	GGNCC	4 cut(s)	29, 401, 649, 776
BmiI	GGNNCC	6 cut(s)	30, 278, 284, 402, 650, 656
BmrFI	CCNGG	1 cut(s)	647
BmsI	GCATC	2 cut(s)	242, 614
Bpu14I	TTCGAA	2 cut(s)	392, 764
BpuMI	CCSGG	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	326, 646, 698
BsaWI	WCCGGW	2 cut(s)	254, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 261, 633
Bse118I	RCCGGY	4 cut(s)	279, 311, 651, 683
Bse1I	ACTGG	2 cut(s)	58, 430
BseDI	CCNNGG	3 cut(s)	326, 646, 698
BseGI	GGATG	2 cut(s)	266, 638
BseLI	CCNNNNNNNGG	3 cut(s)	257, 261, 633
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	58, 430
BseXI	GCAGC	2 cut(s)	192, 564
BsgI	GTGCAG	2 cut(s)	63, 435
BshFI	GGCC	3 cut(s)	57, 429, 651
BshNI	GGYRCC	3 cut(s)	276, 282, 654
BsiSI	CCGG	8 cut(s)	255, 274, 280, 312, 627, 646, 652, 684
BslI	CCNNNNNNNGG	3 cut(s)	257, 261, 633
BsnI	GGCC	3 cut(s)	57, 429, 651
Bsp119I	TTCGAA	2 cut(s)	392, 764
BspACI	CCGC	2 cut(s)	174, 546
BspANI	GGCC	3 cut(s)	57, 429, 651
BspCNI	CTCAG	1 cut(s)	511
BspLI	GGNNCC	6 cut(s)	30, 278, 284, 402, 650, 656
BspT104I	TTCGAA	2 cut(s)	392, 764
BspT107I	GGYRCC	3 cut(s)	276, 282, 654
BsrFI	RCCGGY	4 cut(s)	279, 311, 651, 683
BsrI	ACTGG	2 cut(s)	58, 430
BssAI	RCCGGY	4 cut(s)	279, 311, 651, 683
BssECI	CCNNGG	3 cut(s)	326, 646, 698
BssNI	GRCGYC	1 cut(s)	277
BssSI	CACGAG	2 cut(s)	293, 665
Bst2BI	CACGAG	2 cut(s)	293, 665
BstACI	GRCGYC	1 cut(s)	277
BstBI	TTCGAA	2 cut(s)	392, 764
BstC8I	GCNNGC	4 cut(s)	281, 323, 653, 695
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	2 cut(s)	326, 698
BstF5I	GGATG	2 cut(s)	266, 638
BstH2I	RGCGCY	3 cut(s)	280, 353, 725
BstHHI	GCGC	3 cut(s)	279, 352, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 661
BstSCI	CCNGG	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	192, 564
BstXI	CCANNNNNNTGG	2 cut(s)	314, 686
BsuRI	GGCC	3 cut(s)	57, 429, 651
BtgI	CCRYGG	2 cut(s)	326, 698
BtsCI	GGATG	2 cut(s)	266, 638
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	4 cut(s)	281, 323, 653, 695
CfoI	GCGC	3 cut(s)	279, 352, 724
Cfr10I	RCCGGY	4 cut(s)	279, 311, 651, 683
Cfr13I	GGNCC	4 cut(s)	29, 401, 649, 776
Csp6I	GTAC	2 cut(s)	151, 523
CviAII	CATG	2 cut(s)	237, 609
CviJI	RGCY	7 cut(s)	57, 133, 311, 429, 505, 651, 683
CviKI_1	RGCY	7 cut(s)	57, 133, 311, 429, 505, 651, 683
CviQI	GTAC	2 cut(s)	151, 523
DdeI	CTNAG	1 cut(s)	519
DinI	GGCGCC	1 cut(s)	278
DraIII	CACNNNGTG	2 cut(s)	327, 699
EaeI	YGGCCR	2 cut(s)	55, 427
Eco47I	GGWCC	3 cut(s)	29, 401, 776
Eco47III	AGCGCT	2 cut(s)	351, 723
EgeI	GGCGCC	1 cut(s)	278
EheI	GGCGCC	1 cut(s)	278
FaeI	CATG	2 cut(s)	240, 612
FaiI	YATR	8 cut(s)	130, 238, 341, 373, 502, 610, 713, 745
FatI	CATG	2 cut(s)	236, 608
Fnu4HI	GCNGC	2 cut(s)	206, 578
FokI	GGATG	2 cut(s)	273, 645
Fsp4HI	GCNGC	2 cut(s)	206, 578
GlaI	GCGC	3 cut(s)	278, 351, 723
GluI	GCNGC	2 cut(s)	206, 578
HaeII	RGCGCY	3 cut(s)	280, 353, 725
HaeIII	GGCC	3 cut(s)	57, 429, 651
HapII	CCGG	8 cut(s)	255, 274, 280, 312, 627, 646, 652, 684
HhaI	GCGC	3 cut(s)	279, 352, 724
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	240, 612
Hin6I	GCGC	3 cut(s)	277, 350, 722
HinP1I	GCGC	3 cut(s)	277, 350, 722
HincII	GTYRAC	4 cut(s)	181, 304, 553, 676
HindII	GTYRAC	4 cut(s)	181, 304, 553, 676
HinfI	GANTC	1 cut(s)	247
HpaI	GTTAAC	2 cut(s)	181, 553
HpaII	CCGG	8 cut(s)	255, 274, 280, 312, 627, 646, 652, 684
HphI	GGTGA	4 cut(s)	58, 91, 430, 463
Hpy166II	GTNNAC	6 cut(s)	51, 181, 304, 423, 553, 676
Hpy188III	TCNNGA	4 cut(s)	32, 187, 404, 559
Hpy8I	GTNNAC	6 cut(s)	51, 181, 304, 423, 553, 676
HpyAV	CCTTC	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	80, 166, 452, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 661
HpyF3I	CTNAG	1 cut(s)	519
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	240, 612
HspAI	GCGC	3 cut(s)	277, 350, 722
KasI	GGCGCC	1 cut(s)	276
KroI	GCCGGC	2 cut(s)	279, 651
KroNI	GCCGGC	2 cut(s)	281, 653
KspAI	GTTAAC	2 cut(s)	181, 553
Lsp1109I	GCAGC	2 cut(s)	192, 564
LweI	GCATC	2 cut(s)	242, 614
MboII	GAAGA	2 cut(s)	234, 606
MlsI	TGGCCA	2 cut(s)	57, 429
MluCI	AATT	2 cut(s)	117, 489
MluNI	TGGCCA	2 cut(s)	57, 429
Mly113I	GGCGCC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	74, 79, 262, 446, 451, 634, 789
Mox20I	TGGCCA	2 cut(s)	57, 429
MroNI	GCCGGC	2 cut(s)	279, 651
MscI	TGGCCA	2 cut(s)	57, 429
MseI	TTAA	6 cut(s)	180, 197, 218, 552, 569, 590
Msp20I	TGGCCA	2 cut(s)	57, 429
MspI	CCGG	8 cut(s)	255, 274, 280, 312, 627, 646, 652, 684
MspR9I	CCNGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	289, 661
NaeI	GCCGGC	2 cut(s)	281, 653
NarI	GGCGCC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	647
NgoMIV	GCCGGC	2 cut(s)	279, 651
NlaIII	CATG	2 cut(s)	240, 612
NlaIV	GGNNCC	6 cut(s)	30, 278, 284, 402, 650, 656
NspV	TTCGAA	2 cut(s)	392, 764
PdiI	GCCGGC	2 cut(s)	281, 653
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	207, 579
PluTI	GGCGCC	1 cut(s)	280
PspN4I	GGNNCC	6 cut(s)	30, 278, 284, 402, 650, 656
PspPI	GGNCC	4 cut(s)	29, 401, 649, 776
RsaI	GTAC	2 cut(s)	152, 524
RsaNI	GTAC	2 cut(s)	151, 523
SaqAI	TTAA	6 cut(s)	180, 197, 218, 552, 569, 590
SatI	GCNGC	2 cut(s)	206, 578
Sau96I	GGNCC	4 cut(s)	29, 401, 649, 776
ScrFI	CCNGG	1 cut(s)	647
SetI	ASST	5 cut(s)	71, 88, 443, 460, 781
SfaNI	GCATC	2 cut(s)	242, 614
SfoI	GGCGCC	1 cut(s)	278
SfuI	TTCGAA	2 cut(s)	392, 764
SinI	GGWCC	3 cut(s)	29, 401, 776
Sse9I	AATT	2 cut(s)	117, 489
SsiI	CCGC	2 cut(s)	174, 546
SspDI	GGCGCC	1 cut(s)	276
SspI	AATATT	2 cut(s)	222, 594
StyD4I	CCNGG	1 cut(s)	645
TaqI	TCGA	4 cut(s)	245, 392, 617, 764
TasI	AATT	2 cut(s)	117, 489
TatI	WGTACW	2 cut(s)	150, 522
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	6 cut(s)	180, 197, 218, 552, 569, 590
Tru9I	TTAA	6 cut(s)	180, 197, 218, 552, 569, 590
TscAI	CASTG	1 cut(s)	523
TseI	GCWGC	2 cut(s)	205, 577
TspDTI	ATGAA	2 cut(s)	377, 749
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	3 cut(s)	29, 401, 776
XcmI	CCANNNNNNNNNTGG	2 cut(s)	314, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.