Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005418

Physical Location & Seq

Genomic Coordinates Forward (+)

967088 .. 967495

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1013100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTTGGTTTTTGAGTGAGAGAAAAGGAAGGAAGGGATGGATGGAGGAGACCCTAGCCTCCGTCTCCGCGCCGCCGTCGTCCCTAGTGATGCTAGTCGGCATAGTGGTTGCGTTACTAATATTTTCATCTTACACCAGCTACAAGGCGCAGATGGAGAGAACTAAGTTCGGGTTCAATATATTTGTCTTGTTTCTGCCCTTGTTGTTGACCATTGTAGCTTACTGTTTGATCACATACCGGAACTTTGGGGTGAGGACGAAGGCGGCGGTGGCTGATAAGGCAGCTGAAGGTGGAGGAGCATCCCCCTGGGGCGTGGCCTTGTTTCTGGGGCTGTTGCTTGTTTTGGTGTCCTATCAGTCTTCTGTGCAGTCCAAGTGGTGGCCTCACTATTGGGGTACTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.03

Weight (kDa)

9.63

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42146
fragaria_vesca	FvH4_5g34311
malus_domestica	MD05G1115600.v1.1 MD08G1013100.v1.1 MD10G1118100.v1.1
prunus_persica	Prupe.1G365100_v2.0.a1 Prupe.8G160400_v2.0.a1
pyrus_communis	pycom08g01120
rosa_chinensis	RchiOBHm_Chr6g0245271 RchiOBHm_Chr6g0302871
rosa_laevigata	RLG00000011129
rosa_multiflora	Rmu_sc0001288.1_g000011 Rmu_sc0005398.1_g000002 Rmu_sc0006393.1_g000001 Rmu_ssc0000460.1_g000011
rosa_roxburghii	Rroxscaffold_7G00165220 Rroxscaffold_7G00215310
rosa_rugosa	Rorug05G0513200.1 Rorug06G0317900
rosa_samantha	Rh6AG028500 Rh6AG431200 Rh6BG024700 Rh6BG471400 Rh6CG022800 Rh6CG443600 Rh6DG022800 Rh6DG430300
rosa_wichuraiana	Rw6G002400 Rw6G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccII	CGCG	1 cut(s)	71
AciI	CCGC	4 cut(s)	69, 74, 266, 269
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	141, 221, 287
AluI	AGCT	3 cut(s)	141, 221, 287
Alw26I	GTCTC	2 cut(s)	44, 70
AoxI	GGCC	2 cut(s)	318, 383
ApeKI	GCWGC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	73, 151
AsuHPI	GGTGA	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	3 cut(s)	33, 37, 148
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	310
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	44, 70
BfaI	CTAG	3 cut(s)	56, 86, 95
BisI	GCNGC	3 cut(s)	74, 267, 285
BlsI	GCNGC	3 cut(s)	75, 268, 286
Bme1390I	CCNGG	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	81, 311
BpiI	GAAGAC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	308, 309
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	308, 309
BseGI	GGATG	3 cut(s)	44, 48, 302
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseRI	GAGGAG	2 cut(s)	62, 312
BseXI	GCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	320, 385
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	44, 70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	320, 385
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	4 cut(s)	69, 74, 266, 269
BspANI	GGCC	2 cut(s)	320, 385
BspFNI	CGCG	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	308, 309
BssMI	GATC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	44, 48, 302
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	73, 151
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	44, 70
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	320, 385
BtsCI	GGATG	3 cut(s)	44, 48, 302
CfoI	GCGC	2 cut(s)	73, 151
Csp6I	GTAC	1 cut(s)	399
CviJI	RGCY	8 cut(s)	59, 141, 221, 275, 287, 320, 334, 385
CviKI_1	RGCY	8 cut(s)	59, 141, 221, 275, 287, 320, 334, 385
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	308
Esp3I	CGTCTC	1 cut(s)	70
FaiI	YATR	3 cut(s)	104, 182, 238
FaqI	GGGAC	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	74, 267, 285
FokI	GGATG	3 cut(s)	51, 55, 289
Fsp4HI	GCNGC	3 cut(s)	74, 267, 285
FspBI	CTAG	3 cut(s)	56, 86, 95
GlaI	GCGC	2 cut(s)	72, 150
GluI	GCNGC	3 cut(s)	74, 267, 285
HaeIII	GGCC	2 cut(s)	320, 385
HapII	CCGG	1 cut(s)	241
HhaI	GCGC	2 cut(s)	73, 151
Hin6I	GCGC	2 cut(s)	71, 149
HinP1I	GCGC	2 cut(s)	71, 149
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	4 cut(s)	24, 28, 256, 284
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	1 cut(s)	165
HspAI	GCGC	2 cut(s)	71, 149
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	5 cut(s)	151, 254, 295, 314, 322
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	2 cut(s)	81, 311
MaeI	CTAG	3 cut(s)	56, 86, 95
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	1 cut(s)	354
MnlI	CCTC	5 cut(s)	40, 70, 249, 290, 396
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NdeII	GATC	1 cut(s)	231
PasI	CCCWGGG	1 cut(s)	309
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	3 cut(s)	75, 268, 286
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SatI	GCNGC	3 cut(s)	74, 267, 285
Sau3AI	GATC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	4 cut(s)	143, 223, 289, 295
SfaNI	GCATC	2 cut(s)	81, 311
SsiI	CCGC	4 cut(s)	69, 74, 266, 269
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	3 cut(s)	56, 86, 95
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	227
TauI	GCSGC	2 cut(s)	76, 269
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	381
XspI	CTAG	3 cut(s)	56, 86, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.