Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005418

Physical Location & Seq

Genomic Coordinates Reverse (-)

23663035 .. 23663466

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1115600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGTGGTTCTACCCTAAGAGGAGGGGCCCACAGTGGAAGCAAGGTTGGACTGGCCAAACCCTAACCTCAATCTCTGCACCTCCCCTACATTTGCTCACCATCTTTGCCATTGTTATTGCTTTCTTATGTCTTTCTCAGTACACCGACTACAAGTCCCAAATGCAACACACAACCATCAACGCCCACCTTTTCCTAATATCCTTTCCTATTTTCTTGATATTTTTGGTAGCTTCGTACTCTTCGATTTCTTCTACCGGATGGTTCAACTCCGGGTACCGGCCTTCACAGCGCGAGGCAGTTCAACGAGCAGGCAGGGGTGGCAGCTCAAGCTCGCCGTGGGGTGTTGCCATCTTGTTGGTGCTGCTTCTGGTGTTGGTGTCTTACCAATCATCGGTTCATTCCAAGTGGTTTGGTGGGAGGTCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.08

Weight (kDa)

10.0

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42146
fragaria_vesca	FvH4_5g34311
malus_domestica	MD05G1115600.v1.1 MD08G1013100.v1.1 MD10G1118100.v1.1
prunus_persica	Prupe.1G365100_v2.0.a1 Prupe.8G160400_v2.0.a1
pyrus_communis	pycom08g01120
rosa_chinensis	RchiOBHm_Chr6g0245271 RchiOBHm_Chr6g0302871
rosa_laevigata	RLG00000011129
rosa_multiflora	Rmu_sc0001288.1_g000011 Rmu_sc0005398.1_g000002 Rmu_sc0006393.1_g000001 Rmu_ssc0000460.1_g000011
rosa_roxburghii	Rroxscaffold_7G00165220 Rroxscaffold_7G00215310
rosa_rugosa	Rorug05G0513200.1 Rorug06G0317900
rosa_samantha	Rh6AG028500 Rh6AG431200 Rh6BG024700 Rh6BG471400 Rh6CG022800 Rh6CG443600 Rh6DG022800 Rh6DG430300
rosa_wichuraiana	Rw6G002400 Rw6G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	276
AccII	CGCG	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	3 cut(s)	143, 239, 278
AfiI	CCNNNNNNNGG	2 cut(s)	279, 394
AgsI	TTSAA	2 cut(s)	268, 305
AhdI	GACNNNNNGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	3 cut(s)	233, 327, 333
AluI	AGCT	3 cut(s)	233, 327, 333
AoxI	GGCC	3 cut(s)	28, 55, 281
ApaI	GGGCCC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	324, 364
Asp718I	GGTACC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	28, 29
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	336, 351
BccI	CCATC	4 cut(s)	110, 185, 255, 359
BceAI	ACGGC	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	274
BisI	GCNGC	2 cut(s)	325, 365
BlsI	GCNGC	2 cut(s)	326, 366
Bme1390I	CCNGG	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	28, 29
BmiI	GGNNCC	3 cut(s)	29, 30, 278
BmrFI	CCNGG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 394
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	2 cut(s)	279, 394
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	336, 351
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	30, 57, 283
BshNI	GGYRCC	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	258, 273, 280
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	279, 394
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	3 cut(s)	30, 57, 283
Bsp120I	GGGCCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	32
BspANI	GGCC	3 cut(s)	30, 57, 283
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	29, 30, 278
BspT107I	GGYRCC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	313, 335
BstDEI	CTNAG	2 cut(s)	18, 138
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 321, 330
BstSCI	CCNGG	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	336, 351
BstXI	CCANNNNNNTGG	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	30, 57, 283
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	313, 335
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	28, 29
Csp6I	GTAC	3 cut(s)	142, 238, 277
CviJI	RGCY	6 cut(s)	30, 57, 233, 283, 327, 333
CviKI_1	RGCY	6 cut(s)	30, 57, 233, 283, 327, 333
CviQI	GTAC	3 cut(s)	142, 238, 277
DdeI	CTNAG	2 cut(s)	18, 138
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	32
FaiI	YATR	1 cut(s)	130
FaqI	GGGAC	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	325, 365
FokI	GGATG	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	325, 365
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	2 cut(s)	325, 365
HaeIII	GGCC	3 cut(s)	30, 57, 283
HapII	CCGG	3 cut(s)	258, 273, 280
HhaI	GCGC	1 cut(s)	294
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	258, 273, 280
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	80, 166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 321, 330
HpyF3I	CTNAG	2 cut(s)	18, 138
HspAI	GCGC	1 cut(s)	292
KpnI	GGTACC	1 cut(s)	280
LpnPI	CCDG	7 cut(s)	39, 271, 286, 293, 297, 301, 356
Lsp1109I	GCAGC	2 cut(s)	336, 351
MboII	GAAGA	2 cut(s)	234, 243
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MmeI	TCCRAC	2 cut(s)	29, 405
MnlI	CCTC	6 cut(s)	15, 18, 79, 93, 289, 414
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	3 cut(s)	258, 273, 280
MspR9I	CCNGG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	289, 321, 330
NciI	CCSGG	1 cut(s)	274
NlaIV	GGNNCC	3 cut(s)	29, 30, 278
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	326, 366
PspN4I	GGNNCC	3 cut(s)	29, 30, 278
PspOMI	GGGCCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	28, 29
RsaI	GTAC	3 cut(s)	143, 239, 278
RsaNI	GTAC	3 cut(s)	142, 238, 277
SatI	GCNGC	2 cut(s)	325, 365
Sau96I	GGNCC	2 cut(s)	28, 29
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	8 cut(s)	49, 71, 85, 192, 235, 329, 335, 425
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	245
TatI	WGTACW	1 cut(s)	141
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	2 cut(s)	324, 364
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.