Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005418

Physical Location & Seq

Genomic Coordinates Forward (+)

3490333 .. 3491234

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGTGGTTCTACCCTAAAAGAAGGGGTCCAGAATGGAAGCAAGGGTGGACTGGCCAGACCCTCACCTCCATTTCTGCACCACCTTTACATTTACTCACCATCTTTGCCATTGTAATTTTATTGCTATGGCTTTCTCAATACACCGAGTACAGATCCCAAATGCAACAGACCGCCGTTAACTTCCAGATATTGTTAATGTTGCTGCCTGTTTTCTTAATATTTTTGGTAGCATCATGTTCTTCGATTTCCTCCGGTGGATGGTTCAACTTCCGGCGCCGGCACCCACAGCACGAGTTGGTCAACCAAGCCGGTGGTGGCTCGCCGTGGGGTGTTGCCATATTGGTAGCGCTGGTTTTGGTCTTGCTATCATACCAATCATCTTTTCATTCGAAGTGGTTTGGACCTCTTGGGAGATTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.09

Weight (kDa)

9.89

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42146
fragaria_vesca	FvH4_5g34311
malus_domestica	MD05G1115600.v1.1 MD08G1013100.v1.1 MD10G1118100.v1.1
prunus_persica	Prupe.1G365100_v2.0.a1 Prupe.8G160400_v2.0.a1
pyrus_communis	pycom08g01120
rosa_chinensis	RchiOBHm_Chr6g0245271 RchiOBHm_Chr6g0302871
rosa_laevigata	RLG00000011129
rosa_multiflora	Rmu_sc0001288.1_g000011 Rmu_sc0005398.1_g000002 Rmu_sc0006393.1_g000001 Rmu_ssc0000460.1_g000011
rosa_roxburghii	Rroxscaffold_7G00165220 Rroxscaffold_7G00215310
rosa_rugosa	Rorug05G0513200.1 Rorug06G0317900
rosa_samantha	Rh6AG028500 Rh6AG431200 Rh6BG024700 Rh6BG471400 Rh6CG022800 Rh6CG443600 Rh6DG022800 Rh6DG430300
rosa_wichuraiana	Rw6G002400 Rw6G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	276, 282
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	268
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AlwI	GGATC	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	351
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	205
AspLEI	GCGC	2 cut(s)	279, 352
AspS9I	GGNCC	2 cut(s)	29, 404
AsuHPI	GGTGA	2 cut(s)	58, 91
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	29, 404
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	2 cut(s)	276, 282
BauI	CACGAG	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	110, 255
BceAI	ACGGC	2 cut(s)	161, 310
BfoI	RGCGCY	2 cut(s)	280, 353
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	29, 404
BmgT120I	GGNCC	2 cut(s)	29, 404
BmiI	GGNNCC	3 cut(s)	30, 278, 284
BmsI	GCATC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	2 cut(s)	279, 311
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	2 cut(s)	276, 282
BsiSI	CCGG	4 cut(s)	255, 274, 280, 312
BslI	CCNNNNNNNGG	1 cut(s)	261
BsnI	GGCC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	57
BspLI	GGNNCC	3 cut(s)	30, 278, 284
BspPI	GGATC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	392
BspT107I	GGYRCC	2 cut(s)	276, 282
BsrFI	RCCGGY	2 cut(s)	279, 311
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	2 cut(s)	279, 311
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	281, 323
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	266
BstH2I	RGCGCY	2 cut(s)	280, 353
BstHHI	GCGC	2 cut(s)	279, 352
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	155
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	281, 323
CfoI	GCGC	2 cut(s)	279, 352
Cfr10I	RCCGGY	2 cut(s)	279, 311
Cfr13I	GGNCC	2 cut(s)	29, 404
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	4 cut(s)	57, 133, 311, 321
CviKI_1	RGCY	4 cut(s)	57, 133, 311, 321
CviQI	GTAC	1 cut(s)	151
DinI	GGCGCC	1 cut(s)	278
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	29, 404
Eco47III	AGCGCT	1 cut(s)	351
EgeI	GGCGCC	1 cut(s)	278
EheI	GGCGCC	1 cut(s)	278
FaeI	CATG	1 cut(s)	240
FaiI	YATR	4 cut(s)	130, 238, 341, 373
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	206
GlaI	GCGC	2 cut(s)	278, 351
GluI	GCNGC	1 cut(s)	206
HaeII	RGCGCY	2 cut(s)	280, 353
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	4 cut(s)	255, 274, 280, 312
HhaI	GCGC	2 cut(s)	279, 352
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	2 cut(s)	277, 350
HinP1I	GCGC	2 cut(s)	277, 350
HincII	GTYRAC	2 cut(s)	181, 304
HindII	GTYRAC	2 cut(s)	181, 304
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	4 cut(s)	255, 274, 280, 312
HphI	GGTGA	2 cut(s)	58, 91
Hpy166II	GTNNAC	3 cut(s)	51, 181, 304
Hpy188III	TCNNGA	2 cut(s)	32, 187
Hpy8I	GTNNAC	3 cut(s)	51, 181, 304
HpyAV	CCTTC	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	80, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	2 cut(s)	277, 350
KasI	GGCGCC	1 cut(s)	276
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	155
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	1 cut(s)	242
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	234
MflI	RGATCY	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	74, 79, 262, 417
Mox20I	TGGCCA	1 cut(s)	57
MroNI	GCCGGC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	3 cut(s)	180, 197, 218
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	4 cut(s)	255, 274, 280, 312
MwoI	GCNNNNNNNGC	1 cut(s)	289
NaeI	GCCGGC	1 cut(s)	281
NarI	GGCGCC	1 cut(s)	277
NdeII	GATC	1 cut(s)	155
NgoMIV	GCCGGC	1 cut(s)	279
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	3 cut(s)	30, 278, 284
NspV	TTCGAA	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	207
PluTI	GGCGCC	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	30, 278, 284
PspPI	GGNCC	2 cut(s)	29, 404
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	180, 197, 218
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	2 cut(s)	29, 404
SetI	ASST	3 cut(s)	71, 88, 409
SfaNI	GCATC	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	2 cut(s)	29, 404
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	174
SspDI	GGCGCC	1 cut(s)	276
SspI	AATATT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	245, 392
TasI	AATT	1 cut(s)	117
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	180, 197, 218
Tru9I	TTAA	3 cut(s)	180, 197, 218
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	29, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.