Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005418

Physical Location & Seq

Genomic Coordinates Reverse (-)

60995041 .. 60995445

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG430300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGTCTGCTGTGATTGAAAGAAAGGGATCAGGGAAGCCAGGGTGGAGAGAGCAAACCCTAGCCTCCATGTCTGTACCTCCTTCTCCTCTGATTGCCCTAGTTGGGATAGTCGTGTTGTTATTGTACCTTTCGTCCTACTCAAATTACAGGGCCCAGATGTATAAGACCCAAGCTAGTTTCAATCTTTTTCTCTTGTTTTTGCCTATGATATTGATATTCCTGGCCTACTGCATGACCAAGTATGGGAGGTTTATGAGTCCGGCGACGAAGGAGAAGGTGGTGAATGATCAGTCCGGCGCGTCGCCTTGGGGGGTTAGTTTATTCCTGGGGCTCATGCTGATGTTGGTCTCCTATCAGTCTTATTTTCAGTCCAAGTGGTGGCCGCACTGGCGTGCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.27

Weight (kDa)

9.72

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42146
fragaria_vesca	FvH4_5g34311
malus_domestica	MD05G1115600.v1.1 MD08G1013100.v1.1 MD10G1118100.v1.1
prunus_persica	Prupe.1G365100_v2.0.a1 Prupe.8G160400_v2.0.a1
pyrus_communis	pycom08g01120
rosa_chinensis	RchiOBHm_Chr6g0245271 RchiOBHm_Chr6g0302871
rosa_laevigata	RLG00000011129
rosa_multiflora	Rmu_sc0001288.1_g000011 Rmu_sc0005398.1_g000002 Rmu_sc0006393.1_g000001 Rmu_ssc0000460.1_g000011
rosa_roxburghii	Rroxscaffold_7G00165220 Rroxscaffold_7G00215310
rosa_rugosa	Rorug05G0513200.1 Rorug06G0317900
rosa_samantha	Rh6AG028500 Rh6AG431200 Rh6BG024700 Rh6BG471400 Rh6CG022800 Rh6CG443600 Rh6DG022800 Rh6DG430300
rosa_wichuraiana	Rw6G002400 Rw6G037360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AccII	CGCG	1 cut(s)	302
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	383
AfaI	GTAC	2 cut(s)	78, 128
AfiI	CCNNNNNNNGG	3 cut(s)	105, 246, 381
AgsI	TTSAA	2 cut(s)	20, 184
AjnI	CCWGG	3 cut(s)	40, 222, 327
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	3 cut(s)	153, 225, 383
ApaI	GGGCCC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	153, 154
AsuHPI	GGTGA	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	157
BanII	GRGCYC	2 cut(s)	157, 336
BciT130I	CCWGG	3 cut(s)	42, 224, 329
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	3 cut(s)	62, 101, 177
BglI	GCCNNNNNGGC	1 cut(s)	391
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	3 cut(s)	42, 224, 329
BmgT120I	GGNCC	2 cut(s)	153, 154
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	3 cut(s)	42, 224, 329
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	3 cut(s)	41, 308, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 246, 381
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	3 cut(s)	42, 224, 329
BseDI	CCNNGG	3 cut(s)	41, 308, 328
BseLI	CCNNNNNNNGG	3 cut(s)	105, 246, 381
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	155, 227, 385
BsiSI	CCGG	2 cut(s)	263, 297
BslI	CCNNNNNNNGG	3 cut(s)	105, 246, 381
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	155, 227, 385
Bso31I	GGTCTC	1 cut(s)	355
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	157, 336
Bsp143I	GATC	2 cut(s)	29, 289
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	155, 227, 385
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	3 cut(s)	41, 308, 328
BssMI	GATC	2 cut(s)	29, 289
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	3 cut(s)	42, 224, 329
BstC8I	GCNNGC	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	32, 292
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	29, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	3 cut(s)	42, 224, 329
BstSCI	CCNGG	3 cut(s)	40, 222, 327
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	155, 227, 385
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	153, 154
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	77, 127
CviAII	CATG	3 cut(s)	70, 235, 337
CviJI	RGCY	7 cut(s)	40, 65, 155, 176, 227, 334, 385
CviKI_1	RGCY	7 cut(s)	40, 65, 155, 176, 227, 334, 385
CviQI	GTAC	2 cut(s)	77, 127
DpnI	GATC	2 cut(s)	31, 291
DpnII	GATC	2 cut(s)	29, 289
EaeI	YGGCCR	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	2 cut(s)	157, 336
Eco31I	GGTCTC	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	153
EcoRII	CCWGG	3 cut(s)	40, 222, 327
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	2 cut(s)	157, 336
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	73, 238, 340
FaiI	YATR	7 cut(s)	71, 165, 209, 236, 246, 257, 338
FatI	CATG	3 cut(s)	69, 234, 336
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	386
FriOI	GRGCYC	2 cut(s)	157, 336
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	3 cut(s)	62, 101, 177
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	155, 227, 385
HapII	CCGG	2 cut(s)	263, 297
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	73, 238, 340
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	5, 259
HpaII	CCGG	2 cut(s)	263, 297
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	93
Hpy99I	CGWCG	2 cut(s)	271, 307
HpyAV	CCTTC	3 cut(s)	93, 265, 271
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	73, 238, 340
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	29, 289
MaeI	CTAG	3 cut(s)	62, 101, 177
MalI	GATC	2 cut(s)	31, 291
MboI	GATC	2 cut(s)	29, 289
MhlI	GDGCHC	2 cut(s)	157, 336
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	14, 268
MnlI	CCTC	4 cut(s)	76, 90, 99, 243
MslI	CAYNNNNRTG	2 cut(s)	341, 393
MspI	CCGG	2 cut(s)	263, 297
MspR9I	CCNGG	3 cut(s)	42, 224, 329
MvaI	CCWGG	3 cut(s)	42, 224, 329
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	2 cut(s)	29, 289
NlaIII	CATG	3 cut(s)	73, 238, 340
NlaIV	GGNNCC	1 cut(s)	155
OliI	CACNNNNGTG	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	13, 267
PpsI	GAGTC	2 cut(s)	13, 267
Psp6I	CCWGG	3 cut(s)	40, 222, 327
PspGI	CCWGG	3 cut(s)	40, 222, 327
PspN4I	GGNNCC	1 cut(s)	155
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	153, 154
RsaI	GTAC	2 cut(s)	78, 128
RsaNI	GTAC	2 cut(s)	77, 127
RseI	CAYNNNNRTG	2 cut(s)	341, 393
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	2 cut(s)	29, 289
Sau96I	GGNCC	2 cut(s)	153, 154
SchI	GAGTC	2 cut(s)	14, 268
ScrFI	CCNGG	3 cut(s)	42, 224, 329
SduI	GDGCHC	2 cut(s)	157, 336
SetI	ASST	5 cut(s)	82, 132, 178, 254, 282
SmiMI	CAYNNNNRTG	2 cut(s)	341, 393
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	3 cut(s)	62, 101, 177
StyD4I	CCNGG	3 cut(s)	40, 222, 327
StyI	CCWWGG	1 cut(s)	308
TasI	AATT	1 cut(s)	145
TauI	GCSGC	1 cut(s)	388
TscAI	CASTG	1 cut(s)	395
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	381
XspI	CTAG	3 cut(s)	62, 101, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.